RNA–Protein interactions for RNA: ENST00000441439.6

LMO3-208, Transcript of LIM domain only 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO3, Length 3,515 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-208ENST00000441439 NISCHQ9Y2I1 1504 aa16.31■□□□□ 0.2
LMO3-208ENST00000441439 CCDC180Q9P1Z9 1646 aa14.54□□□□□ -0.08
LMO3-208ENST00000441439 DCAF1Q9Y4B6 1507 aa13.94□□□□□ -0.18
LMO3-208ENST00000441439 ZCCHC6Q5VYS8 1495 aaKnown RBP13.89□□□□□ -0.19
LMO3-208ENST00000441439 MYO15BQ96JP2 1530 aa13.73□□□□□ -0.21
LMO3-208ENST00000441439 HRCP23327 699 aa13.36□□□□□ -0.27
LMO3-208ENST00000441439 NACADO15069 1562 aa13.18□□□□□ -0.3
LMO3-208ENST00000441439 ABCC9O60706 1549 aa13.12□□□□□ -0.31
LMO3-208ENST00000441439 PELP1Q8IZL8 1130 aaKnown RBP13.08□□□□□ -0.32
LMO3-208ENST00000441439 UNC13AQ9UPW8 1703 aa12.96□□□□□ -0.33
LMO3-208ENST00000441439 CHIC1Q5VXU3 224 aa12.94□□□□□ -0.34
LMO3-208ENST00000441439 SHROOM4Q9ULL8 1493 aa12.87□□□□□ -0.35
LMO3-208ENST00000441439 RB1CC1Q8TDY2 1594 aa12.85□□□□□ -0.35
LMO3-208ENST00000441439 SUPT5HO00267 1087 aaKnown RBP12.8□□□□□ -0.36
LMO3-208ENST00000441439 PCGF6Q9BYE7 350 aa12.79□□□□□ -0.36
LMO3-208ENST00000441439 EIF4G1Q04637 1599 aaKnown RBP12.77□□□□□ -0.37
LMO3-208ENST00000441439 PPARGC1BQ86YN6 1023 aaKnown RBP12.73□□□□□ -0.37
LMO3-208ENST00000441439 PEG3Q9GZU2 1588 aa12.72□□□□□ -0.37
LMO3-208ENST00000441439 ZEB1P37275 1124 aaPredicted RBP12.71□□□□□ -0.38
LMO3-208ENST00000441439 SCRIBQ14160 1630 aa12.69□□□□□ -0.38
LMO3-208ENST00000441439 TRIM26Q12899 539 aaPredicted RBP12.67□□□□□ -0.38
LMO3-208ENST00000441439 BAZ1AQ9NRL2 1556 aaPredicted RBP12.67□□□□□ -0.38
LMO3-208ENST00000441439 MYT1Q01538 1121 aa12.66□□□□□ -0.38
LMO3-208ENST00000441439 BICRAQ9NZM4 1560 aa12.64□□□□□ -0.39
LMO3-208ENST00000441439 RSF1Q96T23 1441 aaPredicted RBP12.59□□□□□ -0.39
LMO3-208ENST00000441439 SMARCA4P51532 1647 aa12.54□□□□□ -0.4
LMO3-208ENST00000441439 SCAF1Q9H7N4 1312 aaKnown RBP12.52□□□□□ -0.41
LMO3-208ENST00000441439 TOP2AP11388 1531 aaKnown RBP12.47□□□□□ -0.41
LMO3-208ENST00000441439 MROH2BQ7Z745 1585 aa12.47□□□□□ -0.41
LMO3-208ENST00000441439 WIZO95785 1651 aa12.43□□□□□ -0.42
LMO3-208ENST00000441439 LOC105371045A0A1W2PR82 267 aa12.37□□□□□ -0.43
LMO3-208ENST00000441439 SMARCA2P51531 1590 aa12.36□□□□□ -0.43
LMO3-208ENST00000441439 CECR2Q9BXF3 1484 aa12.36□□□□□ -0.43
LMO3-208ENST00000441439 PRDM2Q13029 1718 aa12.34□□□□□ -0.43
LMO3-208ENST00000441439 ACIN1Q9UKV3 1341 aaKnown RBP12.3□□□□□ -0.44
LMO3-208ENST00000441439 HMGXB3Q12766 1538 aa12.24□□□□□ -0.45
LMO3-208ENST00000441439 BIVM-ERCC5R4GMW8 1640 aa12.14□□□□□ -0.47
LMO3-208ENST00000441439 NEUROD1Q13562 356 aa12.14□□□□□ -0.47
LMO3-208ENST00000441439 CENPBP07199 599 aaPredicted RBP12.12□□□□□ -0.47
LMO3-208ENST00000441439 WRNQ14191 1432 aaPredicted RBP eCLIP12.12□□□□□ -0.47
LMO3-208ENST00000441439 CCDC88BA6NC98 1476 aa12.1□□□□□ -0.47
LMO3-208ENST00000441439 ATAD2BQ9ULI0 1458 aa12.07□□□□□ -0.48
LMO3-208ENST00000441439 NCAPD3P42695 1498 aa12.05□□□□□ -0.48
LMO3-208ENST00000441439 TRIM41Q8WV44 630 aa12.04□□□□□ -0.48
LMO3-208ENST00000441439 GTF3C3Q9Y5Q9 886 aa12.04□□□□□ -0.48
LMO3-208ENST00000441439 DIEXFQ68CQ4 756 aaKnown RBP11.99□□□□□ -0.49
LMO3-208ENST00000441439 TTBK1Q5TCY1 1321 aaPredicted RBP11.98□□□□□ -0.49
LMO3-208ENST00000441439 KIF21BO75037 1637 aa11.98□□□□□ -0.49
LMO3-208ENST00000441439 TOP2BQ02880 1626 aa11.98□□□□□ -0.49
LMO3-208ENST00000441439 CLSPNQ9HAW4 1339 aa11.94□□□□□ -0.5
LMO3-208ENST00000441439 EEA1Q15075 1411 aa11.94□□□□□ -0.5
LMO3-208ENST00000441439 SYNJ1O43426 1573 aa11.89□□□□□ -0.51
LMO3-208ENST00000441439 CCER1Q8TC90 406 aaPredicted RBP11.89□□□□□ -0.51
LMO3-208ENST00000441439 DCAF8L2P0C7V8 631 aa11.88□□□□□ -0.51
LMO3-208ENST00000441439 ZNF316A6NFI3 1004 aaPredicted RBP11.86□□□□□ -0.51
LMO3-208ENST00000441439 BAZ1BQ9UIG0 1483 aaKnown RBP11.85□□□□□ -0.51
LMO3-208ENST00000441439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.85□□□□□ -0.51
LMO3-208ENST00000441439 WDR97A6NE52 1622 aa11.83□□□□□ -0.51
LMO3-208ENST00000441439 CFTRP13569 1480 aa11.83□□□□□ -0.52
LMO3-208ENST00000441439 TNIKQ9UKE5 1360 aa11.83□□□□□ -0.52
LMO3-208ENST00000441439 ERICH3Q5RHP9 1530 aa11.81□□□□□ -0.52
LMO3-208ENST00000441439 ABCC8Q09428 1581 aa11.8□□□□□ -0.52
LMO3-208ENST00000441439 CEP162Q5TB80 1403 aa11.79□□□□□ -0.52
LMO3-208ENST00000441439 FAM9AQ8IZU1 332 aaPredicted RBP11.73□□□□□ -0.53
LMO3-208ENST00000441439 CC2D2AQ9P2K1 1620 aa11.7□□□□□ -0.54
LMO3-208ENST00000441439 CUX1P39880 1505 aa11.7□□□□□ -0.54
LMO3-208ENST00000441439 GOLGA3Q08378 1498 aa11.67□□□□□ -0.54
LMO3-208ENST00000441439 LAMC3Q9Y6N6 1575 aa11.66□□□□□ -0.54
LMO3-208ENST00000441439 MIER1Q8N108 512 aa11.65□□□□□ -0.54
LMO3-208ENST00000441439 PRXQ9BXM0 1461 aa11.65□□□□□ -0.54
LMO3-208ENST00000441439 CEP164Q9UPV0 1460 aa11.61□□□□□ -0.55
LMO3-208ENST00000441439 ANP32EQ9BTT0 268 aa11.6□□□□□ -0.55
LMO3-208ENST00000441439 DNMBPQ6XZF7 1577 aa11.6□□□□□ -0.55
LMO3-208ENST00000441439 SUPT16HQ9Y5B9 1047 aaKnown RBP11.58□□□□□ -0.56
LMO3-208ENST00000441439 CUX2O14529 1486 aa11.58□□□□□ -0.56
LMO3-208ENST00000441439 ABCA5Q8WWZ7 1642 aa11.57□□□□□ -0.56
LMO3-208ENST00000441439 MAP3K1Q13233 1512 aa11.57□□□□□ -0.56
LMO3-208ENST00000441439 CUL7Q14999 1698 aa11.57□□□□□ -0.56
LMO3-208ENST00000441439 KIF21AQ7Z4S6 1674 aa11.56□□□□□ -0.56
LMO3-208ENST00000441439 SOGA1O94964 1423 aa11.56□□□□□ -0.56
LMO3-208ENST00000441439 VPS8Q8N3P4 1428 aa11.56□□□□□ -0.56
LMO3-208ENST00000441439 RUSC2Q8N2Y8 1516 aa11.53□□□□□ -0.56
LMO3-208ENST00000441439 TSHZ2Q9NRE2 1034 aa11.53□□□□□ -0.56
LMO3-208ENST00000441439 CTTNBP2Q8WZ74 1663 aa11.53□□□□□ -0.56
LMO3-208ENST00000441439 CSRNP3Q8WYN3 585 aa11.52□□□□□ -0.57
LMO3-208ENST00000441439 ABCA10Q8WWZ4 1543 aa11.5□□□□□ -0.57
LMO3-208ENST00000441439 CFAP43Q8NDM7 1665 aa11.5□□□□□ -0.57
LMO3-208ENST00000441439 YTHDC1Q96MU7 727 aaKnown RBP11.49□□□□□ -0.57
LMO3-208ENST00000441439 CLIP1P30622 1438 aa11.49□□□□□ -0.57
LMO3-208ENST00000441439 TARBP1Q13395 1621 aaKnown RBP11.49□□□□□ -0.57
LMO3-208ENST00000441439 CADPSQ9ULU8 1353 aa11.48□□□□□ -0.57
LMO3-208ENST00000441439 BCL11AQ9H165 835 aa11.48□□□□□ -0.57
LMO3-208ENST00000441439 DHX57Q6P158 1386 aaKnown RBP11.47□□□□□ -0.57
LMO3-208ENST00000441439 SAMD9Q5K651 1589 aa11.44□□□□□ -0.58
LMO3-208ENST00000441439 RRBP1Q9P2E9 1410 aaKnown RBP11.43□□□□□ -0.58
LMO3-208ENST00000441439 PABPN1Q86U42 306 aaKnown RBP eCLIP11.42□□□□□ -0.58
LMO3-208ENST00000441439 EHMT2Q96KQ7 1210 aa11.42□□□□□ -0.58
LMO3-208ENST00000441439 PBRM1Q86U86 1689 aa11.41□□□□□ -0.58
LMO3-208ENST00000441439 ARAP1Q96P48 1450 aa11.41□□□□□ -0.58
LMO3-208ENST00000441439 TOPBP1Q92547 1522 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms