RNA–Protein interactions for RNA: ENST00000438254.1

CUBN-204, Transcript of cubilin, humanhuman

TSL 3

Gene CUBN, Length 599 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUBN-204ENST00000438254 AEBP2Q6ZN18 517 aaPredicted RBP27■■□□□ 1.91
CUBN-204ENST00000438254 CHIC1Q5VXU3 224 aa25.43■■□□□ 1.66
CUBN-204ENST00000438254 SENP3Q9H4L4 574 aaPredicted RBP23.2■■□□□ 1.3
CUBN-204ENST00000438254 NISCHQ9Y2I1 1504 aa22.83■■□□□ 1.25
CUBN-204ENST00000438254 PHF23Q9BUL5 403 aaPredicted RBP22.8■■□□□ 1.24
CUBN-204ENST00000438254 FOXD1Q16676 465 aa21.59■■□□□ 1.05
CUBN-204ENST00000438254 MSH5O43196 834 aa20.41■□□□□ 0.86
CUBN-204ENST00000438254 POTEDQ86YR6 584 aa20.35■□□□□ 0.85
CUBN-204ENST00000438254 PLPPR3Q6T4P5 718 aa20.21■□□□□ 0.83
CUBN-204ENST00000438254 PIAS4Q8N2W9 510 aaPredicted RBP20.11■□□□□ 0.81
CUBN-204ENST00000438254 CCDC180Q9P1Z9 1646 aa20.08■□□□□ 0.8
CUBN-204ENST00000438254 PPP6R1Q9UPN7 881 aa19.9■□□□□ 0.78
CUBN-204ENST00000438254 ADRA2BP18089 450 aa19.82■□□□□ 0.76
CUBN-204ENST00000438254 ZCCHC6Q5VYS8 1495 aaKnown RBP19.15■□□□□ 0.66
CUBN-204ENST00000438254 ABCC9O60706 1549 aa19.11■□□□□ 0.65
CUBN-204ENST00000438254 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
CUBN-204ENST00000438254 MYO15BQ96JP2 1530 aa18.86■□□□□ 0.61
CUBN-204ENST00000438254 NACADO15069 1562 aa18.75■□□□□ 0.59
CUBN-204ENST00000438254 DCAF8L2P0C7V8 631 aa18.69■□□□□ 0.58
CUBN-204ENST00000438254 RB1CC1Q8TDY2 1594 aa18.61■□□□□ 0.57
CUBN-204ENST00000438254 DMRT2Q9Y5R5 561 aa18.33■□□□□ 0.52
CUBN-204ENST00000438254 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
CUBN-204ENST00000438254 SCAF1Q9H7N4 1312 aaKnown RBP18.28■□□□□ 0.52
CUBN-204ENST00000438254 MAPK8IP2Q13387 824 aaPredicted RBP18.27■□□□□ 0.52
CUBN-204ENST00000438254 UNC13AQ9UPW8 1703 aa18.25■□□□□ 0.51
CUBN-204ENST00000438254 SHROOM4Q9ULL8 1493 aa18.25■□□□□ 0.51
CUBN-204ENST00000438254 BICRAQ9NZM4 1560 aa18.12■□□□□ 0.49
CUBN-204ENST00000438254 PABPN1Q86U42 306 aaKnown RBP eCLIP17.93■□□□□ 0.46
CUBN-204ENST00000438254 CECR2Q9BXF3 1484 aa17.74■□□□□ 0.43
CUBN-204ENST00000438254 BAZ1AQ9NRL2 1556 aaPredicted RBP17.64■□□□□ 0.41
CUBN-204ENST00000438254 CACNB1Q02641 598 aaPredicted RBP17.63■□□□□ 0.41
CUBN-204ENST00000438254 PPP4R3CPQ6ZMV5 832 aa17.63■□□□□ 0.41
CUBN-204ENST00000438254 MROH2BQ7Z745 1585 aa17.62■□□□□ 0.41
CUBN-204ENST00000438254 SMARCA4P51532 1647 aa17.61■□□□□ 0.41
CUBN-204ENST00000438254 RSF1Q96T23 1441 aaPredicted RBP17.59■□□□□ 0.41
CUBN-204ENST00000438254 EIF4G1Q04637 1599 aaKnown RBP17.56■□□□□ 0.4
CUBN-204ENST00000438254 HOXD11P31277 338 aaPredicted RBP17.55■□□□□ 0.4
CUBN-204ENST00000438254 DCAF8L1A6NGE4 600 aa17.51■□□□□ 0.39
CUBN-204ENST00000438254 PEG3Q9GZU2 1588 aa17.48■□□□□ 0.39
CUBN-204ENST00000438254 WIZO95785 1651 aa17.43■□□□□ 0.38
CUBN-204ENST00000438254 CNKSR2Q8WXI2 1034 aa17.42■□□□□ 0.38
CUBN-204ENST00000438254 ATAD2BQ9ULI0 1458 aa17.39■□□□□ 0.37
CUBN-204ENST00000438254 SUPT5HO00267 1087 aaKnown RBP17.38■□□□□ 0.37
CUBN-204ENST00000438254 SMARCA2P51531 1590 aa17.36■□□□□ 0.37
CUBN-204ENST00000438254 RNF216Q9NWF9 866 aaPredicted RBP17.35■□□□□ 0.37
CUBN-204ENST00000438254 RNF39Q9H2S5 420 aa17.34■□□□□ 0.37
CUBN-204ENST00000438254 CC2D2AQ9P2K1 1620 aa17.34■□□□□ 0.37
CUBN-204ENST00000438254 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
CUBN-204ENST00000438254 TOP2AP11388 1531 aaKnown RBP17.27■□□□□ 0.36
CUBN-204ENST00000438254 HMGXB3Q12766 1538 aa17.27■□□□□ 0.36
CUBN-204ENST00000438254 BAZ1BQ9UIG0 1483 aaKnown RBP17.23■□□□□ 0.35
CUBN-204ENST00000438254 DNAJC5BQ9UF47 199 aa17.15■□□□□ 0.34
CUBN-204ENST00000438254 C1QBPQ07021 282 aaKnown RBP17.12■□□□□ 0.33
CUBN-204ENST00000438254 CCDC88BA6NC98 1476 aa17.07■□□□□ 0.32
CUBN-204ENST00000438254 NCBP3Q53F19 620 aaKnown RBP16.93■□□□□ 0.3
CUBN-204ENST00000438254 CFTRP13569 1480 aa16.84■□□□□ 0.29
CUBN-204ENST00000438254 CADPSQ9ULU8 1353 aa16.8■□□□□ 0.28
CUBN-204ENST00000438254 LAMC3Q9Y6N6 1575 aa16.75■□□□□ 0.27
CUBN-204ENST00000438254 PRDM2Q13029 1718 aa16.73■□□□□ 0.27
CUBN-204ENST00000438254 NESP48681 1621 aa16.72■□□□□ 0.27
CUBN-204ENST00000438254 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.68■□□□□ 0.26
CUBN-204ENST00000438254 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
CUBN-204ENST00000438254 NPM3O75607 178 aaKnown RBP16.6■□□□□ 0.25
CUBN-204ENST00000438254 PDS5BQ9NTI5 1447 aa16.58■□□□□ 0.24
CUBN-204ENST00000438254 ABCC8Q09428 1581 aa16.58■□□□□ 0.24
CUBN-204ENST00000438254 WRNQ14191 1432 aaPredicted RBP eCLIP16.53■□□□□ 0.24
CUBN-204ENST00000438254 KIF21AQ7Z4S6 1674 aa16.53■□□□□ 0.24
CUBN-204ENST00000438254 CEP164Q9UPV0 1460 aa16.52■□□□□ 0.23
CUBN-204ENST00000438254 SYNJ1O43426 1573 aa16.51■□□□□ 0.23
CUBN-204ENST00000438254 CUX1P39880 1505 aa16.5■□□□□ 0.23
CUBN-204ENST00000438254 BIVM-ERCC5R4GMW8 1640 aa16.48■□□□□ 0.23
CUBN-204ENST00000438254 TOP2BQ02880 1626 aa16.47■□□□□ 0.23
CUBN-204ENST00000438254 URB2Q14146 1524 aaKnown RBP16.44■□□□□ 0.22
CUBN-204ENST00000438254 DNMBPQ6XZF7 1577 aa16.43■□□□□ 0.22
CUBN-204ENST00000438254 TOPBP1Q92547 1522 aa16.41■□□□□ 0.22
CUBN-204ENST00000438254 TRIM41Q8WV44 630 aa16.41■□□□□ 0.22
CUBN-204ENST00000438254 MRC2Q9UBG0 1479 aa16.41■□□□□ 0.22
CUBN-204ENST00000438254 THOC2Q8NI27 1593 aaKnown RBP16.39■□□□□ 0.21
CUBN-204ENST00000438254 ERCC6Q03468 1493 aa16.38■□□□□ 0.21
CUBN-204ENST00000438254 WDR62O43379 1518 aa16.37■□□□□ 0.21
CUBN-204ENST00000438254 FGD5Q6ZNL6 1462 aa16.33■□□□□ 0.2
CUBN-204ENST00000438254 POLA1P09884 1462 aaPredicted RBP16.31■□□□□ 0.2
CUBN-204ENST00000438254 U3KPZ7 1027 aaPredicted RBP16.28■□□□□ 0.2
CUBN-204ENST00000438254 CUX2O14529 1486 aa16.25■□□□□ 0.19
CUBN-204ENST00000438254 SOGA1O94964 1423 aa16.22■□□□□ 0.19
CUBN-204ENST00000438254 WDR97A6NE52 1622 aa16.22■□□□□ 0.19
CUBN-204ENST00000438254 TARBP1Q13395 1621 aaKnown RBP16.22■□□□□ 0.19
CUBN-204ENST00000438254 RAD54L2Q9Y4B4 1467 aa16.22■□□□□ 0.19
CUBN-204ENST00000438254 ABCA10Q8WWZ4 1543 aa16.21■□□□□ 0.19
CUBN-204ENST00000438254 RUSC2Q8N2Y8 1516 aa16.19■□□□□ 0.18
CUBN-204ENST00000438254 EEA1Q15075 1411 aa16.17■□□□□ 0.18
CUBN-204ENST00000438254 IFT140Q96RY7 1462 aa16.16■□□□□ 0.18
CUBN-204ENST00000438254 ABCA5Q8WWZ7 1642 aa16.12■□□□□ 0.17
CUBN-204ENST00000438254 KIF27Q86VH2 1401 aa16.12■□□□□ 0.17
CUBN-204ENST00000438254 CAPN15O75808 1086 aa16.12■□□□□ 0.17
CUBN-204ENST00000438254 DSG3P32926 999 aa16.12■□□□□ 0.17
CUBN-204ENST00000438254 SPINK5Q9NQ38 1064 aaPredicted RBP16.1■□□□□ 0.17
CUBN-204ENST00000438254 ZNF608Q9ULD9 1512 aaPredicted RBP16.08■□□□□ 0.16
CUBN-204ENST00000438254 TDRD9Q8NDG6 1382 aaKnown RBP16.06■□□□□ 0.16
CUBN-204ENST00000438254 GAPVD1Q14C86 1478 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms