RNA–Protein interactions for RNA: ENST00000433260.1

HMGB3P24-201, Transcript of high mobility group box 3 pseudogene 24, humanhuman

BASIC

Gene HMGB3P24, Length 622 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P24-201ENST00000433260 AEBP2Q6ZN18 517 aaPredicted RBP15.1■□□□□ 0.01
HMGB3P24-201ENST00000433260 CHIC1Q5VXU3 224 aa14.99□□□□□ -0.01
HMGB3P24-201ENST00000433260 NISCHQ9Y2I1 1504 aa13.85□□□□□ -0.19
HMGB3P24-201ENST00000433260 PHF23Q9BUL5 403 aaPredicted RBP13.13□□□□□ -0.31
HMGB3P24-201ENST00000433260 SENP3Q9H4L4 574 aaPredicted RBP12.93□□□□□ -0.34
HMGB3P24-201ENST00000433260 PLPPR3Q6T4P5 718 aa12.3□□□□□ -0.44
HMGB3P24-201ENST00000433260 CCDC180Q9P1Z9 1646 aa12.28□□□□□ -0.44
HMGB3P24-201ENST00000433260 ABCC9O60706 1549 aa12.14□□□□□ -0.47
HMGB3P24-201ENST00000433260 FOXD1Q16676 465 aa11.89□□□□□ -0.51
HMGB3P24-201ENST00000433260 DCAF8L2P0C7V8 631 aa11.79□□□□□ -0.52
HMGB3P24-201ENST00000433260 RB1CC1Q8TDY2 1594 aa11.59□□□□□ -0.55
HMGB3P24-201ENST00000433260 NACADO15069 1562 aa11.56□□□□□ -0.56
HMGB3P24-201ENST00000433260 ADRA2BP18089 450 aa11.56□□□□□ -0.56
HMGB3P24-201ENST00000433260 PPP6R1Q9UPN7 881 aa11.52□□□□□ -0.57
HMGB3P24-201ENST00000433260 ZCCHC6Q5VYS8 1495 aaKnown RBP11.49□□□□□ -0.57
HMGB3P24-201ENST00000433260 MYO15BQ96JP2 1530 aa11.41□□□□□ -0.58
HMGB3P24-201ENST00000433260 PABPN1Q86U42 306 aaKnown RBP eCLIP11.4□□□□□ -0.58
HMGB3P24-201ENST00000433260 UNC13AQ9UPW8 1703 aa11.39□□□□□ -0.59
HMGB3P24-201ENST00000433260 DCAF1Q9Y4B6 1507 aa11.38□□□□□ -0.59
HMGB3P24-201ENST00000433260 PIAS4Q8N2W9 510 aaPredicted RBP11.32□□□□□ -0.6
HMGB3P24-201ENST00000433260 SCRIBQ14160 1630 aa11.28□□□□□ -0.6
HMGB3P24-201ENST00000433260 BICRAQ9NZM4 1560 aa11.25□□□□□ -0.61
HMGB3P24-201ENST00000433260 DNAJC5BQ9UF47 199 aa11.19□□□□□ -0.62
HMGB3P24-201ENST00000433260 SHROOM4Q9ULL8 1493 aa11.08□□□□□ -0.64
HMGB3P24-201ENST00000433260 MSH5O43196 834 aa11.01□□□□□ -0.65
HMGB3P24-201ENST00000433260 EIF4G1Q04637 1599 aaKnown RBP10.95□□□□□ -0.66
HMGB3P24-201ENST00000433260 CC2D2AQ9P2K1 1620 aa10.95□□□□□ -0.66
HMGB3P24-201ENST00000433260 CECR2Q9BXF3 1484 aa10.87□□□□□ -0.67
HMGB3P24-201ENST00000433260 PPP4R3CPQ6ZMV5 832 aa10.83□□□□□ -0.68
HMGB3P24-201ENST00000433260 SMARCA4P51532 1647 aa10.75□□□□□ -0.69
HMGB3P24-201ENST00000433260 SCAF1Q9H7N4 1312 aaKnown RBP10.74□□□□□ -0.69
HMGB3P24-201ENST00000433260 BAZ1AQ9NRL2 1556 aaPredicted RBP10.73□□□□□ -0.69
HMGB3P24-201ENST00000433260 MROH2BQ7Z745 1585 aa10.71□□□□□ -0.69
HMGB3P24-201ENST00000433260 KCNA4P22459 653 aa10.7□□□□□ -0.7
HMGB3P24-201ENST00000433260 ATAD2BQ9ULI0 1458 aa10.69□□□□□ -0.7
HMGB3P24-201ENST00000433260 NCBP3Q53F19 620 aaKnown RBP10.69□□□□□ -0.7
HMGB3P24-201ENST00000433260 NCAPD3P42695 1498 aa10.67□□□□□ -0.7
HMGB3P24-201ENST00000433260 SMARCA2P51531 1590 aa10.65□□□□□ -0.7
HMGB3P24-201ENST00000433260 WIZO95785 1651 aa10.63□□□□□ -0.71
HMGB3P24-201ENST00000433260 BAZ1BQ9UIG0 1483 aaKnown RBP10.61□□□□□ -0.71
HMGB3P24-201ENST00000433260 HMGXB3Q12766 1538 aa10.58□□□□□ -0.72
HMGB3P24-201ENST00000433260 PEG3Q9GZU2 1588 aa10.58□□□□□ -0.72
HMGB3P24-201ENST00000433260 RSF1Q96T23 1441 aaPredicted RBP10.57□□□□□ -0.72
HMGB3P24-201ENST00000433260 CNKSR2Q8WXI2 1034 aa10.52□□□□□ -0.73
HMGB3P24-201ENST00000433260 NESP48681 1621 aa10.5□□□□□ -0.73
HMGB3P24-201ENST00000433260 SUPT5HO00267 1087 aaKnown RBP10.44□□□□□ -0.74
HMGB3P24-201ENST00000433260 ERCC6Q03468 1493 aa10.43□□□□□ -0.74
HMGB3P24-201ENST00000433260 MAPK8IP2Q13387 824 aaPredicted RBP10.43□□□□□ -0.74
HMGB3P24-201ENST00000433260 TOP2AP11388 1531 aaKnown RBP10.43□□□□□ -0.74
HMGB3P24-201ENST00000433260 NPM3O75607 178 aaKnown RBP10.4□□□□□ -0.74
HMGB3P24-201ENST00000433260 CADPSQ9ULU8 1353 aa10.39□□□□□ -0.75
HMGB3P24-201ENST00000433260 LAMC3Q9Y6N6 1575 aa10.39□□□□□ -0.75
HMGB3P24-201ENST00000433260 KIF21AQ7Z4S6 1674 aa10.37□□□□□ -0.75
HMGB3P24-201ENST00000433260 CCDC88BA6NC98 1476 aa10.36□□□□□ -0.75
HMGB3P24-201ENST00000433260 PDS5BQ9NTI5 1447 aa10.34□□□□□ -0.75
HMGB3P24-201ENST00000433260 SLC4A1APQ9BWU0 796 aaKnown RBP10.3□□□□□ -0.76
HMGB3P24-201ENST00000433260 DMRT2Q9Y5R5 561 aa10.3□□□□□ -0.76
HMGB3P24-201ENST00000433260 CFTRP13569 1480 aa10.3□□□□□ -0.76
HMGB3P24-201ENST00000433260 FANCD2Q9BXW9 1451 aa10.27□□□□□ -0.77
HMGB3P24-201ENST00000433260 THOC2Q8NI27 1593 aaKnown RBP10.26□□□□□ -0.77
HMGB3P24-201ENST00000433260 RNF216Q9NWF9 866 aaPredicted RBP10.26□□□□□ -0.77
HMGB3P24-201ENST00000433260 CUX2O14529 1486 aa10.25□□□□□ -0.77
HMGB3P24-201ENST00000433260 CEP164Q9UPV0 1460 aa10.24□□□□□ -0.77
HMGB3P24-201ENST00000433260 PRDM2Q13029 1718 aa10.24□□□□□ -0.77
HMGB3P24-201ENST00000433260 MRC2Q9UBG0 1479 aa10.23□□□□□ -0.77
HMGB3P24-201ENST00000433260 WDR62O43379 1518 aa10.17□□□□□ -0.78
HMGB3P24-201ENST00000433260 URB2Q14146 1524 aaKnown RBP10.17□□□□□ -0.78
HMGB3P24-201ENST00000433260 EHMT2Q96KQ7 1210 aa10.16□□□□□ -0.78
HMGB3P24-201ENST00000433260 HOXD11P31277 338 aaPredicted RBP10.15□□□□□ -0.78
HMGB3P24-201ENST00000433260 TOPBP1Q92547 1522 aa10.11□□□□□ -0.79
HMGB3P24-201ENST00000433260 ABCC8Q09428 1581 aa10.08□□□□□ -0.8
HMGB3P24-201ENST00000433260 DNMBPQ6XZF7 1577 aa10.08□□□□□ -0.8
HMGB3P24-201ENST00000433260 DNAJC5Q9H3Z4 198 aa10.05□□□□□ -0.8
HMGB3P24-201ENST00000433260 ZNF608Q9ULD9 1512 aaPredicted RBP10.03□□□□□ -0.8
HMGB3P24-201ENST00000433260 RAD54L2Q9Y4B4 1467 aa10.03□□□□□ -0.8
HMGB3P24-201ENST00000433260 CUX1P39880 1505 aa10.02□□□□□ -0.8
HMGB3P24-201ENST00000433260 IFT140Q96RY7 1462 aa10.02□□□□□ -0.81
HMGB3P24-201ENST00000433260 SOGA1O94964 1423 aa10.01□□□□□ -0.81
HMGB3P24-201ENST00000433260 POLA1P09884 1462 aaPredicted RBP10.01□□□□□ -0.81
HMGB3P24-201ENST00000433260 FGD5Q6ZNL6 1462 aa10.01□□□□□ -0.81
HMGB3P24-201ENST00000433260 AQRO60306 1485 aaKnown RBP eCLIP9.99□□□□□ -0.81
HMGB3P24-201ENST00000433260 TDRD9Q8NDG6 1382 aaKnown RBP9.99□□□□□ -0.81
HMGB3P24-201ENST00000433260 TARBP1Q13395 1621 aaKnown RBP9.98□□□□□ -0.81
HMGB3P24-201ENST00000433260 WRNQ14191 1432 aaPredicted RBP eCLIP9.97□□□□□ -0.81
HMGB3P24-201ENST00000433260 FBLN2P98095 1184 aa9.96□□□□□ -0.82
HMGB3P24-201ENST00000433260 SYNJ1O43426 1573 aa9.95□□□□□ -0.82
HMGB3P24-201ENST00000433260 EIF4G3O43432 1585 aaKnown RBP9.95□□□□□ -0.82
HMGB3P24-201ENST00000433260 OSCARQ8IYS5 282 aa9.94□□□□□ -0.82
HMGB3P24-201ENST00000433260 TOP2BQ02880 1626 aa9.93□□□□□ -0.82
HMGB3P24-201ENST00000433260 DCAF8L1A6NGE4 600 aa9.92□□□□□ -0.82
HMGB3P24-201ENST00000433260 BIVM-ERCC5R4GMW8 1640 aa9.92□□□□□ -0.82
HMGB3P24-201ENST00000433260 CSRNP3Q8WYN3 585 aa9.91□□□□□ -0.82
HMGB3P24-201ENST00000433260 WDR97A6NE52 1622 aa9.89□□□□□ -0.83
HMGB3P24-201ENST00000433260 FOXD4L1Q9NU39 408 aa9.88□□□□□ -0.83
HMGB3P24-201ENST00000433260 CHD1O14646 1710 aa9.87□□□□□ -0.83
HMGB3P24-201ENST00000433260 GAPVD1Q14C86 1478 aa9.87□□□□□ -0.83
HMGB3P24-201ENST00000433260 CHMP7Q8WUX9 453 aaPredicted RBP9.87□□□□□ -0.83
HMGB3P24-201ENST00000433260 ABCA10Q8WWZ4 1543 aa9.87□□□□□ -0.83
HMGB3P24-201ENST00000433260 PBRM1Q86U86 1689 aa9.87□□□□□ -0.83
HMGB3P24-201ENST00000433260 SNAPC4Q5SXM2 1469 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 277.8 ms