RNA–Protein interactions for RNA: ENST00000420421.1

PMS1-207, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 3

Gene PMS1, Length 331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-207ENST00000420421 CHIC1Q5VXU3 224 aa12□□□□□ -0.49
PMS1-207ENST00000420421 NISCHQ9Y2I1 1504 aa11.86□□□□□ -0.51
PMS1-207ENST00000420421 AEBP2Q6ZN18 517 aaPredicted RBP11.62□□□□□ -0.55
PMS1-207ENST00000420421 PHF23Q9BUL5 403 aaPredicted RBP10.61□□□□□ -0.71
PMS1-207ENST00000420421 CCDC180Q9P1Z9 1646 aa10.5□□□□□ -0.73
PMS1-207ENST00000420421 PLPPR3Q6T4P5 718 aa10.06□□□□□ -0.8
PMS1-207ENST00000420421 ZCCHC6Q5VYS8 1495 aaKnown RBP9.94□□□□□ -0.82
PMS1-207ENST00000420421 DCAF1Q9Y4B6 1507 aa9.91□□□□□ -0.82
PMS1-207ENST00000420421 MYO15BQ96JP2 1530 aa9.86□□□□□ -0.83
PMS1-207ENST00000420421 ABCC9O60706 1549 aa9.83□□□□□ -0.84
PMS1-207ENST00000420421 NACADO15069 1562 aa9.78□□□□□ -0.84
PMS1-207ENST00000420421 SENP3Q9H4L4 574 aaPredicted RBP9.77□□□□□ -0.85
PMS1-207ENST00000420421 DCAF8L2P0C7V8 631 aa9.71□□□□□ -0.86
PMS1-207ENST00000420421 EHMT2Q96KQ7 1210 aa9.71□□□□□ -0.86
PMS1-207ENST00000420421 RB1CC1Q8TDY2 1594 aa9.71□□□□□ -0.86
PMS1-207ENST00000420421 UNC13AQ9UPW8 1703 aa9.51□□□□□ -0.89
PMS1-207ENST00000420421 KCNA4P22459 653 aa9.49□□□□□ -0.89
PMS1-207ENST00000420421 SCRIBQ14160 1630 aa9.48□□□□□ -0.89
PMS1-207ENST00000420421 SHROOM4Q9ULL8 1493 aa9.42□□□□□ -0.9
PMS1-207ENST00000420421 ADRA2BP18089 450 aa9.38□□□□□ -0.91
PMS1-207ENST00000420421 BICRAQ9NZM4 1560 aa9.34□□□□□ -0.91
PMS1-207ENST00000420421 CSRNP3Q8WYN3 585 aa9.23□□□□□ -0.93
PMS1-207ENST00000420421 PABPN1Q86U42 306 aaKnown RBP eCLIP9.21□□□□□ -0.94
PMS1-207ENST00000420421 BAZ1AQ9NRL2 1556 aaPredicted RBP9.2□□□□□ -0.94
PMS1-207ENST00000420421 SLC4A1APQ9BWU0 796 aaKnown RBP9.17□□□□□ -0.94
PMS1-207ENST00000420421 SMARCA4P51532 1647 aa9.16□□□□□ -0.94
PMS1-207ENST00000420421 PPP6R1Q9UPN7 881 aa9.15□□□□□ -0.94
PMS1-207ENST00000420421 CECR2Q9BXF3 1484 aa9.14□□□□□ -0.95
PMS1-207ENST00000420421 RSF1Q96T23 1441 aaPredicted RBP9.12□□□□□ -0.95
PMS1-207ENST00000420421 MROH2BQ7Z745 1585 aa9.11□□□□□ -0.95
PMS1-207ENST00000420421 PEG3Q9GZU2 1588 aa9.1□□□□□ -0.95
PMS1-207ENST00000420421 EIF4G1Q04637 1599 aaKnown RBP9.08□□□□□ -0.96
PMS1-207ENST00000420421 SMARCA2P51531 1590 aa9.07□□□□□ -0.96
PMS1-207ENST00000420421 SUPT5HO00267 1087 aaKnown RBP9.06□□□□□ -0.96
PMS1-207ENST00000420421 WIZO95785 1651 aa9.04□□□□□ -0.96
PMS1-207ENST00000420421 SLC24A1O60721 1099 aa9.02□□□□□ -0.97
PMS1-207ENST00000420421 ATAD2BQ9ULI0 1458 aa9.01□□□□□ -0.97
PMS1-207ENST00000420421 NCAPD3P42695 1498 aa8.99□□□□□ -0.97
PMS1-207ENST00000420421 TOP2AP11388 1531 aaKnown RBP8.99□□□□□ -0.97
PMS1-207ENST00000420421 HMGXB3Q12766 1538 aa8.99□□□□□ -0.97
PMS1-207ENST00000420421 FOXD1Q16676 465 aa8.97□□□□□ -0.97
PMS1-207ENST00000420421 CC2D2AQ9P2K1 1620 aa8.97□□□□□ -0.97
PMS1-207ENST00000420421 BAZ1BQ9UIG0 1483 aaKnown RBP8.96□□□□□ -0.98
PMS1-207ENST00000420421 PPP4R3CPQ6ZMV5 832 aa8.94□□□□□ -0.98
PMS1-207ENST00000420421 NCBP3Q53F19 620 aaKnown RBP8.92□□□□□ -0.98
PMS1-207ENST00000420421 CCDC88BA6NC98 1476 aa8.86□□□□□ -0.99
PMS1-207ENST00000420421 PRDM2Q13029 1718 aa8.81□□□□□ -1
PMS1-207ENST00000420421 NPM3O75607 178 aaKnown RBP8.77□□□□□ -1.01
PMS1-207ENST00000420421 AMER1Q5JTC6 1135 aaPredicted RBP8.77□□□□□ -1.01
PMS1-207ENST00000420421 RTN4Q9NQC3 1192 aaKnown RBP8.76□□□□□ -1.01
PMS1-207ENST00000420421 CFTRP13569 1480 aa8.74□□□□□ -1.01
PMS1-207ENST00000420421 LAMC3Q9Y6N6 1575 aa8.73□□□□□ -1.01
PMS1-207ENST00000420421 ZBTB22O15209 634 aa8.73□□□□□ -1.01
PMS1-207ENST00000420421 CADPSQ9ULU8 1353 aa8.73□□□□□ -1.01
PMS1-207ENST00000420421 DNAJC5BQ9UF47 199 aa8.71□□□□□ -1.02
PMS1-207ENST00000420421 PIAS4Q8N2W9 510 aaPredicted RBP8.66□□□□□ -1.02
PMS1-207ENST00000420421 PDS5BQ9NTI5 1447 aa8.64□□□□□ -1.03
PMS1-207ENST00000420421 ABCC8Q09428 1581 aa8.62□□□□□ -1.03
PMS1-207ENST00000420421 TRIM41Q8WV44 630 aa8.61□□□□□ -1.03
PMS1-207ENST00000420421 FANCD2Q9BXW9 1451 aa8.61□□□□□ -1.03
PMS1-207ENST00000420421 WRNQ14191 1432 aaPredicted RBP eCLIP8.61□□□□□ -1.03
PMS1-207ENST00000420421 BIVM-ERCC5R4GMW8 1640 aa8.61□□□□□ -1.03
PMS1-207ENST00000420421 TOP2BQ02880 1626 aa8.59□□□□□ -1.03
PMS1-207ENST00000420421 NESP48681 1621 aa8.58□□□□□ -1.04
PMS1-207ENST00000420421 CEP164Q9UPV0 1460 aa8.58□□□□□ -1.04
PMS1-207ENST00000420421 KIF21AQ7Z4S6 1674 aa8.58□□□□□ -1.04
PMS1-207ENST00000420421 FOXD4L1Q9NU39 408 aa8.56□□□□□ -1.04
PMS1-207ENST00000420421 DNMBPQ6XZF7 1577 aa8.56□□□□□ -1.04
PMS1-207ENST00000420421 SYNJ1O43426 1573 aa8.54□□□□□ -1.04
PMS1-207ENST00000420421 CNKSR2Q8WXI2 1034 aa8.54□□□□□ -1.04
PMS1-207ENST00000420421 CUX1P39880 1505 aa8.53□□□□□ -1.04
PMS1-207ENST00000420421 EEA1Q15075 1411 aa8.52□□□□□ -1.05
PMS1-207ENST00000420421 TOPBP1Q92547 1522 aa8.51□□□□□ -1.05
PMS1-207ENST00000420421 MRC2Q9UBG0 1479 aa8.51□□□□□ -1.05
PMS1-207ENST00000420421 ERCC6Q03468 1493 aa8.5□□□□□ -1.05
PMS1-207ENST00000420421 WDR62O43379 1518 aa8.48□□□□□ -1.05
PMS1-207ENST00000420421 URB2Q14146 1524 aaKnown RBP8.48□□□□□ -1.05
PMS1-207ENST00000420421 FGD5Q6ZNL6 1462 aa8.46□□□□□ -1.05
PMS1-207ENST00000420421 THOC2Q8NI27 1593 aaKnown RBP8.46□□□□□ -1.06
PMS1-207ENST00000420421 WDR97A6NE52 1622 aa8.46□□□□□ -1.06
PMS1-207ENST00000420421 POLA1P09884 1462 aaPredicted RBP8.45□□□□□ -1.06
PMS1-207ENST00000420421 ABCA10Q8WWZ4 1543 aa8.44□□□□□ -1.06
PMS1-207ENST00000420421 SOGA1O94964 1423 aa8.43□□□□□ -1.06
PMS1-207ENST00000420421 KIF27Q86VH2 1401 aa8.43□□□□□ -1.06
PMS1-207ENST00000420421 SCAF1Q9H7N4 1312 aaKnown RBP8.42□□□□□ -1.06
PMS1-207ENST00000420421 TARBP1Q13395 1621 aaKnown RBP8.41□□□□□ -1.06
PMS1-207ENST00000420421 IFT140Q96RY7 1462 aa8.41□□□□□ -1.06
PMS1-207ENST00000420421 KIF21BO75037 1637 aa8.38□□□□□ -1.07
PMS1-207ENST00000420421 CUX2O14529 1486 aa8.38□□□□□ -1.07
PMS1-207ENST00000420421 ABCA5Q8WWZ7 1642 aa8.37□□□□□ -1.07
PMS1-207ENST00000420421 ERICH3Q5RHP9 1530 aa8.37□□□□□ -1.07
PMS1-207ENST00000420421 RAD54L2Q9Y4B4 1467 aa8.37□□□□□ -1.07
PMS1-207ENST00000420421 CUL7Q14999 1698 aa8.37□□□□□ -1.07
PMS1-207ENST00000420421 RUSC2Q8N2Y8 1516 aa8.35□□□□□ -1.07
PMS1-207ENST00000420421 GAPVD1Q14C86 1478 aa8.35□□□□□ -1.07
PMS1-207ENST00000420421 PBRM1Q86U86 1689 aa8.34□□□□□ -1.07
PMS1-207ENST00000420421 FKBP8Q14318 412 aa8.34□□□□□ -1.07
PMS1-207ENST00000420421 IGF1RP08069 1367 aa8.34□□□□□ -1.07
PMS1-207ENST00000420421 FAM9AQ8IZU1 332 aaPredicted RBP8.33□□□□□ -1.08
PMS1-207ENST00000420421 GOLGA3Q08378 1498 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms