RNA–Protein interactions for RNA: ENST00000419671.1

COL12A1-204, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5

Gene COL12A1, Length 1,914 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-204ENST00000419671 NISCHQ9Y2I1 1504 aa18.19■□□□□ 0.5
COL12A1-204ENST00000419671 CHIC1Q5VXU3 224 aa17.23■□□□□ 0.35
COL12A1-204ENST00000419671 AEBP2Q6ZN18 517 aaPredicted RBP16.98■□□□□ 0.31
COL12A1-204ENST00000419671 CCDC180Q9P1Z9 1646 aa15.82■□□□□ 0.12
COL12A1-204ENST00000419671 PHF23Q9BUL5 403 aaPredicted RBP15.35■□□□□ 0.05
COL12A1-204ENST00000419671 ZCCHC6Q5VYS8 1495 aaKnown RBP15.32■□□□□ 0.04
COL12A1-204ENST00000419671 DCAF1Q9Y4B6 1507 aa15.01□□□□□ -0.01
COL12A1-204ENST00000419671 SHROOM4Q9ULL8 1493 aa14.94□□□□□ -0.02
COL12A1-204ENST00000419671 DCAF8L2P0C7V8 631 aa14.92□□□□□ -0.02
COL12A1-204ENST00000419671 ABCC9O60706 1549 aa14.8□□□□□ -0.04
COL12A1-204ENST00000419671 MYO15BQ96JP2 1530 aa14.77□□□□□ -0.04
COL12A1-204ENST00000419671 NACADO15069 1562 aa14.65□□□□□ -0.06
COL12A1-204ENST00000419671 SCRIBQ14160 1630 aa14.58□□□□□ -0.08
COL12A1-204ENST00000419671 RB1CC1Q8TDY2 1594 aa14.5□□□□□ -0.09
COL12A1-204ENST00000419671 SUPT5HO00267 1087 aaKnown RBP14.42□□□□□ -0.1
COL12A1-204ENST00000419671 UNC13AQ9UPW8 1703 aa14.37□□□□□ -0.11
COL12A1-204ENST00000419671 PLPPR3Q6T4P5 718 aa14.31□□□□□ -0.12
COL12A1-204ENST00000419671 RSF1Q96T23 1441 aaPredicted RBP14.16□□□□□ -0.14
COL12A1-204ENST00000419671 CECR2Q9BXF3 1484 aa14.14□□□□□ -0.15
COL12A1-204ENST00000419671 BICRAQ9NZM4 1560 aa14.12□□□□□ -0.15
COL12A1-204ENST00000419671 SENP3Q9H4L4 574 aaPredicted RBP14.12□□□□□ -0.15
COL12A1-204ENST00000419671 MROH2BQ7Z745 1585 aa14.09□□□□□ -0.15
COL12A1-204ENST00000419671 BAZ1AQ9NRL2 1556 aaPredicted RBP14.02□□□□□ -0.16
COL12A1-204ENST00000419671 WIZO95785 1651 aa14.02□□□□□ -0.17
COL12A1-204ENST00000419671 SMARCA4P51532 1647 aa13.97□□□□□ -0.17
COL12A1-204ENST00000419671 PABPN1Q86U42 306 aaKnown RBP eCLIP13.96□□□□□ -0.17
COL12A1-204ENST00000419671 TOP2AP11388 1531 aaKnown RBP13.81□□□□□ -0.2
COL12A1-204ENST00000419671 PEG3Q9GZU2 1588 aa13.79□□□□□ -0.2
COL12A1-204ENST00000419671 SMARCA2P51531 1590 aa13.72□□□□□ -0.21
COL12A1-204ENST00000419671 EIF4G1Q04637 1599 aaKnown RBP13.7□□□□□ -0.22
COL12A1-204ENST00000419671 CCDC88BA6NC98 1476 aa13.67□□□□□ -0.22
COL12A1-204ENST00000419671 ATAD2BQ9ULI0 1458 aa13.67□□□□□ -0.22
COL12A1-204ENST00000419671 BAZ1BQ9UIG0 1483 aaKnown RBP13.59□□□□□ -0.23
COL12A1-204ENST00000419671 ADRA2BP18089 450 aa13.54□□□□□ -0.24
COL12A1-204ENST00000419671 HMGXB3Q12766 1538 aa13.53□□□□□ -0.24
COL12A1-204ENST00000419671 TRIM41Q8WV44 630 aa13.52□□□□□ -0.25
COL12A1-204ENST00000419671 NCAPD3P42695 1498 aa13.51□□□□□ -0.25
COL12A1-204ENST00000419671 EHMT2Q96KQ7 1210 aa13.51□□□□□ -0.25
COL12A1-204ENST00000419671 ABCC8Q09428 1581 aa13.48□□□□□ -0.25
COL12A1-204ENST00000419671 CC2D2AQ9P2K1 1620 aa13.43□□□□□ -0.26
COL12A1-204ENST00000419671 KCNA4P22459 653 aa13.43□□□□□ -0.26
COL12A1-204ENST00000419671 LOC105371045A0A1W2PR82 267 aa13.39□□□□□ -0.27
COL12A1-204ENST00000419671 PRDM2Q13029 1718 aa13.32□□□□□ -0.28
COL12A1-204ENST00000419671 SYNJ1O43426 1573 aa13.31□□□□□ -0.28
COL12A1-204ENST00000419671 PPP6R1Q9UPN7 881 aa13.31□□□□□ -0.28
COL12A1-204ENST00000419671 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.28
COL12A1-204ENST00000419671 FAM9AQ8IZU1 332 aaPredicted RBP13.3□□□□□ -0.28
COL12A1-204ENST00000419671 CFTRP13569 1480 aa13.27□□□□□ -0.29
COL12A1-204ENST00000419671 BIVM-ERCC5R4GMW8 1640 aa13.23□□□□□ -0.29
COL12A1-204ENST00000419671 TOP2BQ02880 1626 aa13.23□□□□□ -0.29
COL12A1-204ENST00000419671 SOGA1O94964 1423 aa13.22□□□□□ -0.29
COL12A1-204ENST00000419671 RUSC2Q8N2Y8 1516 aa13.19□□□□□ -0.3
COL12A1-204ENST00000419671 CADPSQ9ULU8 1353 aa13.16□□□□□ -0.3
COL12A1-204ENST00000419671 CUX1P39880 1505 aa13.16□□□□□ -0.3
COL12A1-204ENST00000419671 EEA1Q15075 1411 aa13.15□□□□□ -0.3
COL12A1-204ENST00000419671 FOXD1Q16676 465 aa13.11□□□□□ -0.31
COL12A1-204ENST00000419671 NESP48681 1621 aa13.07□□□□□ -0.32
COL12A1-204ENST00000419671 CSRNP3Q8WYN3 585 aa13.07□□□□□ -0.32
COL12A1-204ENST00000419671 LAMC3Q9Y6N6 1575 aa13.06□□□□□ -0.32
COL12A1-204ENST00000419671 KIF21BO75037 1637 aa13.05□□□□□ -0.32
COL12A1-204ENST00000419671 DNAJC5BQ9UF47 199 aa13.05□□□□□ -0.32
COL12A1-204ENST00000419671 FANCD2Q9BXW9 1451 aa13.04□□□□□ -0.32
COL12A1-204ENST00000419671 GOLGA3Q08378 1498 aa13.01□□□□□ -0.33
COL12A1-204ENST00000419671 CEP164Q9UPV0 1460 aa12.99□□□□□ -0.33
COL12A1-204ENST00000419671 TNIKQ9UKE5 1360 aa12.98□□□□□ -0.33
COL12A1-204ENST00000419671 DNMBPQ6XZF7 1577 aa12.97□□□□□ -0.33
COL12A1-204ENST00000419671 FGD5Q6ZNL6 1462 aa12.97□□□□□ -0.33
COL12A1-204ENST00000419671 KIF21AQ7Z4S6 1674 aa12.97□□□□□ -0.33
COL12A1-204ENST00000419671 CEP162Q5TB80 1403 aa12.95□□□□□ -0.34
COL12A1-204ENST00000419671 RAPGEF2Q9Y4G8 1499 aa12.94□□□□□ -0.34
COL12A1-204ENST00000419671 TOPBP1Q92547 1522 aa12.94□□□□□ -0.34
COL12A1-204ENST00000419671 KIF27Q86VH2 1401 aa12.93□□□□□ -0.34
COL12A1-204ENST00000419671 PRXQ9BXM0 1461 aa12.92□□□□□ -0.34
COL12A1-204ENST00000419671 UBTFP17480 764 aaKnown RBP12.92□□□□□ -0.34
COL12A1-204ENST00000419671 ERICH3Q5RHP9 1530 aa12.91□□□□□ -0.34
COL12A1-204ENST00000419671 URB2Q14146 1524 aaKnown RBP12.9□□□□□ -0.34
COL12A1-204ENST00000419671 PCGF6Q9BYE7 350 aa12.9□□□□□ -0.34
COL12A1-204ENST00000419671 PDS5BQ9NTI5 1447 aa12.9□□□□□ -0.35
COL12A1-204ENST00000419671 CUX2O14529 1486 aa12.89□□□□□ -0.35
COL12A1-204ENST00000419671 POLA1P09884 1462 aaPredicted RBP12.89□□□□□ -0.35
COL12A1-204ENST00000419671 WDR97A6NE52 1622 aa12.87□□□□□ -0.35
COL12A1-204ENST00000419671 SLC4A1APQ9BWU0 796 aaKnown RBP12.86□□□□□ -0.35
COL12A1-204ENST00000419671 RAD54L2Q9Y4B4 1467 aa12.85□□□□□ -0.35
COL12A1-204ENST00000419671 ABCA10Q8WWZ4 1543 aa12.85□□□□□ -0.35
COL12A1-204ENST00000419671 TRIM26Q12899 539 aaPredicted RBP12.84□□□□□ -0.35
COL12A1-204ENST00000419671 IGF1RP08069 1367 aa12.82□□□□□ -0.36
COL12A1-204ENST00000419671 CLIP1P30622 1438 aa12.8□□□□□ -0.36
COL12A1-204ENST00000419671 ABCA5Q8WWZ7 1642 aa12.78□□□□□ -0.36
COL12A1-204ENST00000419671 TARBP1Q13395 1621 aaKnown RBP12.77□□□□□ -0.37
COL12A1-204ENST00000419671 CUL7Q14999 1698 aa12.76□□□□□ -0.37
COL12A1-204ENST00000419671 PPP4R3CPQ6ZMV5 832 aa12.75□□□□□ -0.37
COL12A1-204ENST00000419671 PPARGC1BQ86YN6 1023 aaKnown RBP12.75□□□□□ -0.37
COL12A1-204ENST00000419671 MRC2Q9UBG0 1479 aa12.74□□□□□ -0.37
COL12A1-204ENST00000419671 CARMIL1Q5VZK9 1371 aa12.74□□□□□ -0.37
COL12A1-204ENST00000419671 VPS8Q8N3P4 1428 aa12.72□□□□□ -0.37
COL12A1-204ENST00000419671 PELP1Q8IZL8 1130 aaKnown RBP12.72□□□□□ -0.37
COL12A1-204ENST00000419671 WDR62O43379 1518 aa12.71□□□□□ -0.37
COL12A1-204ENST00000419671 ARAP1Q96P48 1450 aa12.7□□□□□ -0.38
COL12A1-204ENST00000419671 RANGAP1P46060 587 aaPredicted RBP12.7□□□□□ -0.38
COL12A1-204ENST00000419671 PBRM1Q86U86 1689 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms