RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 AEBP2Q6ZN18 517 aaPredicted RBP16.25■□□□□ 0.19
HMGB3-202ENST00000419110 CHIC1Q5VXU3 224 aa15.45■□□□□ 0.06
HMGB3-202ENST00000419110 SENP3Q9H4L4 574 aaPredicted RBP13.88□□□□□ -0.19
HMGB3-202ENST00000419110 NISCHQ9Y2I1 1504 aa13.78□□□□□ -0.2
HMGB3-202ENST00000419110 PHF23Q9BUL5 403 aaPredicted RBP13.71□□□□□ -0.21
HMGB3-202ENST00000419110 FOXD1Q16676 465 aa12.93□□□□□ -0.34
HMGB3-202ENST00000419110 PLPPR3Q6T4P5 718 aa12.36□□□□□ -0.43
HMGB3-202ENST00000419110 CCDC180Q9P1Z9 1646 aa12.27□□□□□ -0.44
HMGB3-202ENST00000419110 MSH5O43196 834 aa12.11□□□□□ -0.47
HMGB3-202ENST00000419110 PPP6R1Q9UPN7 881 aa12.1□□□□□ -0.47
HMGB3-202ENST00000419110 PIAS4Q8N2W9 510 aaPredicted RBP12.09□□□□□ -0.47
HMGB3-202ENST00000419110 ADRA2BP18089 450 aa12.06□□□□□ -0.48
HMGB3-202ENST00000419110 POTEDQ86YR6 584 aa11.8□□□□□ -0.52
HMGB3-202ENST00000419110 ZCCHC6Q5VYS8 1495 aaKnown RBP11.62□□□□□ -0.55
HMGB3-202ENST00000419110 DCAF1Q9Y4B6 1507 aa11.46□□□□□ -0.57
HMGB3-202ENST00000419110 ABCC9O60706 1549 aa11.41□□□□□ -0.58
HMGB3-202ENST00000419110 MYO15BQ96JP2 1530 aa11.35□□□□□ -0.59
HMGB3-202ENST00000419110 NACADO15069 1562 aa11.32□□□□□ -0.6
HMGB3-202ENST00000419110 RB1CC1Q8TDY2 1594 aa11.26□□□□□ -0.61
HMGB3-202ENST00000419110 DCAF8L2P0C7V8 631 aa11.16□□□□□ -0.62
HMGB3-202ENST00000419110 SCRIBQ14160 1630 aa11.16□□□□□ -0.62
HMGB3-202ENST00000419110 UNC13AQ9UPW8 1703 aa11.12□□□□□ -0.63
HMGB3-202ENST00000419110 MAPK8IP2Q13387 824 aaPredicted RBP11.08□□□□□ -0.64
HMGB3-202ENST00000419110 SCAF1Q9H7N4 1312 aaKnown RBP11.07□□□□□ -0.64
HMGB3-202ENST00000419110 SHROOM4Q9ULL8 1493 aa11.06□□□□□ -0.64
HMGB3-202ENST00000419110 DMRT2Q9Y5R5 561 aa11□□□□□ -0.65
HMGB3-202ENST00000419110 BICRAQ9NZM4 1560 aa10.85□□□□□ -0.67
HMGB3-202ENST00000419110 PPP4R3CPQ6ZMV5 832 aa10.83□□□□□ -0.68
HMGB3-202ENST00000419110 BAZ1AQ9NRL2 1556 aaPredicted RBP10.72□□□□□ -0.69
HMGB3-202ENST00000419110 SMARCA4P51532 1647 aa10.7□□□□□ -0.7
HMGB3-202ENST00000419110 CNKSR2Q8WXI2 1034 aa10.63□□□□□ -0.71
HMGB3-202ENST00000419110 CECR2Q9BXF3 1484 aa10.61□□□□□ -0.71
HMGB3-202ENST00000419110 MROH2BQ7Z745 1585 aa10.6□□□□□ -0.71
HMGB3-202ENST00000419110 HOXD11P31277 338 aaPredicted RBP10.6□□□□□ -0.71
HMGB3-202ENST00000419110 WIZO95785 1651 aa10.59□□□□□ -0.71
HMGB3-202ENST00000419110 PABPN1Q86U42 306 aaKnown RBP eCLIP10.58□□□□□ -0.72
HMGB3-202ENST00000419110 RSF1Q96T23 1441 aaPredicted RBP10.58□□□□□ -0.72
HMGB3-202ENST00000419110 PEG3Q9GZU2 1588 aa10.56□□□□□ -0.72
HMGB3-202ENST00000419110 DCAF8L1A6NGE4 600 aa10.56□□□□□ -0.72
HMGB3-202ENST00000419110 EIF4G1Q04637 1599 aaKnown RBP10.56□□□□□ -0.72
HMGB3-202ENST00000419110 SUPT5HO00267 1087 aaKnown RBP10.54□□□□□ -0.72
HMGB3-202ENST00000419110 SMARCA2P51531 1590 aa10.53□□□□□ -0.72
HMGB3-202ENST00000419110 RNF216Q9NWF9 866 aaPredicted RBP10.53□□□□□ -0.72
HMGB3-202ENST00000419110 TOP2AP11388 1531 aaKnown RBP10.53□□□□□ -0.72
HMGB3-202ENST00000419110 HMGXB3Q12766 1538 aa10.47□□□□□ -0.73
HMGB3-202ENST00000419110 BAZ1BQ9UIG0 1483 aaKnown RBP10.42□□□□□ -0.74
HMGB3-202ENST00000419110 NCBP3Q53F19 620 aaKnown RBP10.42□□□□□ -0.74
HMGB3-202ENST00000419110 ATAD2BQ9ULI0 1458 aa10.42□□□□□ -0.74
HMGB3-202ENST00000419110 CC2D2AQ9P2K1 1620 aa10.41□□□□□ -0.74
HMGB3-202ENST00000419110 CACNB1Q02641 598 aaPredicted RBP10.4□□□□□ -0.74
HMGB3-202ENST00000419110 PRDM2Q13029 1718 aa10.36□□□□□ -0.75
HMGB3-202ENST00000419110 NCAPD3P42695 1498 aa10.32□□□□□ -0.76
HMGB3-202ENST00000419110 RNF39Q9H2S5 420 aa10.32□□□□□ -0.76
HMGB3-202ENST00000419110 CCDC88BA6NC98 1476 aa10.27□□□□□ -0.77
HMGB3-202ENST00000419110 NPM3O75607 178 aaKnown RBP10.26□□□□□ -0.77
HMGB3-202ENST00000419110 DNAJC5BQ9UF47 199 aa10.24□□□□□ -0.77
HMGB3-202ENST00000419110 C1QBPQ07021 282 aaKnown RBP10.19□□□□□ -0.78
HMGB3-202ENST00000419110 LAMC3Q9Y6N6 1575 aa10.13□□□□□ -0.79
HMGB3-202ENST00000419110 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.11□□□□□ -0.793e-7■■■■□ 23
HMGB3-202ENST00000419110 ABCC8Q09428 1581 aa10.1□□□□□ -0.79
HMGB3-202ENST00000419110 CFTRP13569 1480 aa10.1□□□□□ -0.79
HMGB3-202ENST00000419110 BIVM-ERCC5R4GMW8 1640 aa10.09□□□□□ -0.79
HMGB3-202ENST00000419110 KCNA4P22459 653 aa10.06□□□□□ -0.8
HMGB3-202ENST00000419110 KIF21AQ7Z4S6 1674 aa10.06□□□□□ -0.8
HMGB3-202ENST00000419110 SYNJ1O43426 1573 aa10.05□□□□□ -0.8
HMGB3-202ENST00000419110 TOP2BQ02880 1626 aa10.04□□□□□ -0.8
HMGB3-202ENST00000419110 CADPSQ9ULU8 1353 aa10.02□□□□□ -0.8
HMGB3-202ENST00000419110 WRNQ14191 1432 aaPredicted RBP eCLIP10.02□□□□□ -0.81
HMGB3-202ENST00000419110 FANCD2Q9BXW9 1451 aa9.99□□□□□ -0.81
HMGB3-202ENST00000419110 CEP164Q9UPV0 1460 aa9.99□□□□□ -0.81
HMGB3-202ENST00000419110 DNMBPQ6XZF7 1577 aa9.98□□□□□ -0.81
HMGB3-202ENST00000419110 NESP48681 1621 aa9.97□□□□□ -0.81
HMGB3-202ENST00000419110 CUX1P39880 1505 aa9.97□□□□□ -0.81
HMGB3-202ENST00000419110 TRIM41Q8WV44 630 aa9.95□□□□□ -0.82
HMGB3-202ENST00000419110 PDS5BQ9NTI5 1447 aa9.94□□□□□ -0.82
HMGB3-202ENST00000419110 WDR97A6NE52 1622 aa9.93□□□□□ -0.82
HMGB3-202ENST00000419110 EEA1Q15075 1411 aa9.9□□□□□ -0.82
HMGB3-202ENST00000419110 THOC2Q8NI27 1593 aaKnown RBP9.89□□□□□ -0.83
HMGB3-202ENST00000419110 TOPBP1Q92547 1522 aa9.89□□□□□ -0.83
HMGB3-202ENST00000419110 MRC2Q9UBG0 1479 aa9.88□□□□□ -0.83
HMGB3-202ENST00000419110 U3KPZ7 1027 aaPredicted RBP9.88□□□□□ -0.83
HMGB3-202ENST00000419110 FGD5Q6ZNL6 1462 aa9.87□□□□□ -0.83
HMGB3-202ENST00000419110 WDR62O43379 1518 aa9.87□□□□□ -0.83
HMGB3-202ENST00000419110 ERCC6Q03468 1493 aa9.86□□□□□ -0.83
HMGB3-202ENST00000419110 URB2Q14146 1524 aaKnown RBP9.86□□□□□ -0.83
HMGB3-202ENST00000419110 KIF21BO75037 1637 aa9.85□□□□□ -0.83
HMGB3-202ENST00000419110 POLA1P09884 1462 aaPredicted RBP9.83□□□□□ -0.84
HMGB3-202ENST00000419110 PBRM1Q86U86 1689 aa9.83□□□□□ -0.84
HMGB3-202ENST00000419110 ABCA5Q8WWZ7 1642 aa9.82□□□□□ -0.84
HMGB3-202ENST00000419110 CUL7Q14999 1698 aa9.8□□□□□ -0.84
HMGB3-202ENST00000419110 TARBP1Q13395 1621 aaKnown RBP9.79□□□□□ -0.84
HMGB3-202ENST00000419110 ABCA10Q8WWZ4 1543 aa9.79□□□□□ -0.84
HMGB3-202ENST00000419110 SLC4A2P04920 1241 aa9.79□□□□□ -0.84
HMGB3-202ENST00000419110 SOGA1O94964 1423 aa9.79□□□□□ -0.84
HMGB3-202ENST00000419110 KIF27Q86VH2 1401 aa9.78□□□□□ -0.84
HMGB3-202ENST00000419110 ERICH3Q5RHP9 1530 aa9.77□□□□□ -0.84
HMGB3-202ENST00000419110 CUX2O14529 1486 aa9.77□□□□□ -0.85
HMGB3-202ENST00000419110 GOLGA3Q08378 1498 aa9.76□□□□□ -0.85
HMGB3-202ENST00000419110 CAPN15O75808 1086 aa9.74□□□□□ -0.85
HMGB3-202ENST00000419110 SPINK5Q9NQ38 1064 aaPredicted RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms