RNA–Protein interactions for RNA: ENST00000415298.5

AP1S3-205, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 1 (best)

Gene AP1S3, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-205ENST00000415298 NISCHQ9Y2I1 1504 aa43.83■■■■■ 4.61
AP1S3-205ENST00000415298 CCDC180Q9P1Z9 1646 aa38.33■■■■□ 3.73
AP1S3-205ENST00000415298 ABCC9O60706 1549 aa37■■■■□ 3.51
AP1S3-205ENST00000415298 ZCCHC6Q5VYS8 1495 aaKnown RBP36.67■■■■□ 3.46
AP1S3-205ENST00000415298 DCAF8L2P0C7V8 631 aa36.63■■■■□ 3.46
AP1S3-205ENST00000415298 DCAF1Q9Y4B6 1507 aa36.1■■■■□ 3.37
AP1S3-205ENST00000415298 PELP1Q8IZL8 1130 aaKnown RBP36.03■■■■□ 3.36
AP1S3-205ENST00000415298 NACADO15069 1562 aa35.88■■■■□ 3.33
AP1S3-205ENST00000415298 MYO15BQ96JP2 1530 aa35.86■■■■□ 3.33
AP1S3-205ENST00000415298 RB1CC1Q8TDY2 1594 aa35.72■■■■□ 3.31
AP1S3-205ENST00000415298 SHROOM4Q9ULL8 1493 aa35.58■■■■□ 3.29
AP1S3-205ENST00000415298 SCRIBQ14160 1630 aa35.36■■■■□ 3.25
AP1S3-205ENST00000415298 MYT1Q01538 1121 aa35.34■■■■□ 3.25
AP1S3-205ENST00000415298 UNC13AQ9UPW8 1703 aa35.07■■■■□ 3.2
AP1S3-205ENST00000415298 PABPN1Q86U42 306 aaKnown RBP eCLIP34.88■■■■□ 3.17
AP1S3-205ENST00000415298 BICRAQ9NZM4 1560 aa34.75■■■■□ 3.15
AP1S3-205ENST00000415298 CECR2Q9BXF3 1484 aa34.22■■■■□ 3.07
AP1S3-205ENST00000415298 HRCP23327 699 aa34.05■■■■□ 3.04
AP1S3-205ENST00000415298 SUPT5HO00267 1087 aaKnown RBP33.96■■■■□ 3.03
AP1S3-205ENST00000415298 MROH2BQ7Z745 1585 aa33.9■■■■□ 3.02
AP1S3-205ENST00000415298 TTBK1Q5TCY1 1321 aaPredicted RBP33.85■■■■□ 3.01
AP1S3-205ENST00000415298 RSF1Q96T23 1441 aaPredicted RBP33.84■■■■□ 3.01
AP1S3-205ENST00000415298 BAZ1AQ9NRL2 1556 aaPredicted RBP33.83■■■■□ 3.01
AP1S3-205ENST00000415298 SMARCA4P51532 1647 aa33.79■■■■□ 3
AP1S3-205ENST00000415298 EIF4G1Q04637 1599 aaKnown RBP33.73■■■□□ 2.99
AP1S3-205ENST00000415298 WIZO95785 1651 aa33.6■■■□□ 2.97
AP1S3-205ENST00000415298 ATAD2BQ9ULI0 1458 aa33.41■■■□□ 2.94
AP1S3-205ENST00000415298 CC2D2AQ9P2K1 1620 aa33.4■■■□□ 2.94
AP1S3-205ENST00000415298 PEG3Q9GZU2 1588 aa33.34■■■□□ 2.93
AP1S3-205ENST00000415298 SMARCA2P51531 1590 aa33.29■■■□□ 2.92
AP1S3-205ENST00000415298 DNAJC5BQ9UF47 199 aa33.28■■■□□ 2.92
AP1S3-205ENST00000415298 SCAF1Q9H7N4 1312 aaKnown RBP33.2■■■□□ 2.91
AP1S3-205ENST00000415298 NCAPD3P42695 1498 aa33.18■■■□□ 2.9
AP1S3-205ENST00000415298 BAZ1BQ9UIG0 1483 aaKnown RBP33.17■■■□□ 2.9
AP1S3-205ENST00000415298 TOP2AP11388 1531 aaKnown RBP33.12■■■□□ 2.89
AP1S3-205ENST00000415298 HMGXB3Q12766 1538 aa33.02■■■□□ 2.88
AP1S3-205ENST00000415298 PPARGC1BQ86YN6 1023 aaKnown RBP32.97■■■□□ 2.87
AP1S3-205ENST00000415298 CCDC88BA6NC98 1476 aa32.88■■■□□ 2.85
AP1S3-205ENST00000415298 PRKCSHP14314 528 aaPredicted RBP32.75■■■□□ 2.83
AP1S3-205ENST00000415298 BCL11AQ9H165 835 aa32.44■■■□□ 2.78
AP1S3-205ENST00000415298 NESP48681 1621 aa32.33■■■□□ 2.77
AP1S3-205ENST00000415298 CADPSQ9ULU8 1353 aa32.33■■■□□ 2.77
AP1S3-205ENST00000415298 CFTRP13569 1480 aa32.3■■■□□ 2.76
AP1S3-205ENST00000415298 PCGF6Q9BYE7 350 aa32.19■■■□□ 2.74
AP1S3-205ENST00000415298 ERICH6Q7L0X2 663 aa32.18■■■□□ 2.74
AP1S3-205ENST00000415298 CHIC1Q5VXU3 224 aa32.14■■■□□ 2.74
AP1S3-205ENST00000415298 LAMC3Q9Y6N6 1575 aa32.1■■■□□ 2.73
AP1S3-205ENST00000415298 ABCC8Q09428 1581 aa32.06■■■□□ 2.72
AP1S3-205ENST00000415298 FAM9AQ8IZU1 332 aaPredicted RBP32.05■■■□□ 2.72
AP1S3-205ENST00000415298 PRDM2Q13029 1718 aa31.99■■■□□ 2.71
AP1S3-205ENST00000415298 APLP2Q06481 763 aa31.98■■■□□ 2.71
AP1S3-205ENST00000415298 FANCD2Q9BXW9 1451 aa31.97■■■□□ 2.71
AP1S3-205ENST00000415298 PDS5BQ9NTI5 1447 aa31.91■■■□□ 2.7
AP1S3-205ENST00000415298 CENPBP07199 599 aaPredicted RBP31.88■■■□□ 2.69
AP1S3-205ENST00000415298 TRIM41Q8WV44 630 aa31.88■■■□□ 2.69
AP1S3-205ENST00000415298 ACIN1Q9UKV3 1341 aaKnown RBP31.87■■■□□ 2.69
AP1S3-205ENST00000415298 KIF21AQ7Z4S6 1674 aa31.84■■■□□ 2.69
AP1S3-205ENST00000415298 WRNQ14191 1432 aaPredicted RBP eCLIP31.84■■■□□ 2.69
AP1S3-205ENST00000415298 CEP164Q9UPV0 1460 aa31.79■■■□□ 2.68
AP1S3-205ENST00000415298 SYNJ1O43426 1573 aa31.75■■■□□ 2.67
AP1S3-205ENST00000415298 CUX1P39880 1505 aa31.71■■■□□ 2.67
AP1S3-205ENST00000415298 ERCC6Q03468 1493 aa31.71■■■□□ 2.67
AP1S3-205ENST00000415298 URB2Q14146 1524 aaKnown RBP31.63■■■□□ 2.65
AP1S3-205ENST00000415298 GTF3C3Q9Y5Q9 886 aa31.61■■■□□ 2.65
AP1S3-205ENST00000415298 TOP2BQ02880 1626 aa31.59■■■□□ 2.65
AP1S3-205ENST00000415298 NEUROD1Q13562 356 aa31.57■■■□□ 2.64
AP1S3-205ENST00000415298 TOPBP1Q92547 1522 aa31.56■■■□□ 2.64
AP1S3-205ENST00000415298 BIVM-ERCC5R4GMW8 1640 aa31.54■■■□□ 2.64
AP1S3-205ENST00000415298 MRC2Q9UBG0 1479 aa31.52■■■□□ 2.64
AP1S3-205ENST00000415298 DNMBPQ6XZF7 1577 aa31.52■■■□□ 2.64
AP1S3-205ENST00000415298 ZEB1P37275 1124 aaPredicted RBP31.48■■■□□ 2.63
AP1S3-205ENST00000415298 FGD5Q6ZNL6 1462 aa31.45■■■□□ 2.62
AP1S3-205ENST00000415298 THOC2Q8NI27 1593 aaKnown RBP31.42■■■□□ 2.62
AP1S3-205ENST00000415298 POLA1P09884 1462 aaPredicted RBP31.38■■■□□ 2.61
AP1S3-205ENST00000415298 WDR62O43379 1518 aa31.37■■■□□ 2.61
AP1S3-205ENST00000415298 SOGA1O94964 1423 aa31.36■■■□□ 2.61
AP1S3-205ENST00000415298 RAD54L2Q9Y4B4 1467 aa31.35■■■□□ 2.61
AP1S3-205ENST00000415298 RUSC2Q8N2Y8 1516 aa31.32■■■□□ 2.6
AP1S3-205ENST00000415298 CUX2O14529 1486 aa31.23■■■□□ 2.59
AP1S3-205ENST00000415298 ANP32EQ9BTT0 268 aa31.2■■■□□ 2.58
AP1S3-205ENST00000415298 TARBP1Q13395 1621 aaKnown RBP31.12■■■□□ 2.57
AP1S3-205ENST00000415298 TDRD9Q8NDG6 1382 aaKnown RBP31.11■■■□□ 2.57
AP1S3-205ENST00000415298 ABCA10Q8WWZ4 1543 aa31.1■■■□□ 2.57
AP1S3-205ENST00000415298 EHMT2Q96KQ7 1210 aa31.09■■■□□ 2.57
AP1S3-205ENST00000415298 KIF27Q86VH2 1401 aa31.05■■■□□ 2.56
AP1S3-205ENST00000415298 IFT140Q96RY7 1462 aa31.04■■■□□ 2.56
AP1S3-205ENST00000415298 ZNF608Q9ULD9 1512 aaPredicted RBP31.03■■■□□ 2.56
AP1S3-205ENST00000415298 CSRNP3Q8WYN3 585 aa31.03■■■□□ 2.56
AP1S3-205ENST00000415298 WDR97A6NE52 1622 aa31.02■■■□□ 2.56
AP1S3-205ENST00000415298 LOC105371045A0A1W2PR82 267 aa31.01■■■□□ 2.56
AP1S3-205ENST00000415298 AQRO60306 1485 aaKnown RBP eCLIP31■■■□□ 2.55
AP1S3-205ENST00000415298 EEA1Q15075 1411 aa30.95■■■□□ 2.55
AP1S3-205ENST00000415298 SLC24A1O60721 1099 aa30.94■■■□□ 2.54
AP1S3-205ENST00000415298 IGF1RP08069 1367 aa30.91■■■□□ 2.54
AP1S3-205ENST00000415298 GAPVD1Q14C86 1478 aa30.91■■■□□ 2.54
AP1S3-205ENST00000415298 ABCA5Q8WWZ7 1642 aa30.88■■■□□ 2.53
AP1S3-205ENST00000415298 TRIM26Q12899 539 aaPredicted RBP30.84■■■□□ 2.53
AP1S3-205ENST00000415298 EIF4G3O43432 1585 aaKnown RBP30.81■■■□□ 2.52
AP1S3-205ENST00000415298 CARMIL1Q5VZK9 1371 aa30.73■■■□□ 2.51
AP1S3-205ENST00000415298 PBRM1Q86U86 1689 aa30.72■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms