RNA–Protein interactions for RNA: ENST00000415143.1

SSR4P1-201, Transcript of signal sequence receptor subunit 4 pseudogene 1, humanhuman

BASIC

Gene SSR4P1, Length 412 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR4P1-201ENST00000415143 NISCHQ9Y2I1 1504 aa29.04■■■□□ 2.24
SSR4P1-201ENST00000415143 ABCC9O60706 1549 aa26.8■■□□□ 1.88
SSR4P1-201ENST00000415143 DNAJC5BQ9UF47 199 aa25.9■■□□□ 1.74
SSR4P1-201ENST00000415143 CCDC180Q9P1Z9 1646 aa25.89■■□□□ 1.74
SSR4P1-201ENST00000415143 RB1CC1Q8TDY2 1594 aa25.08■■□□□ 1.61
SSR4P1-201ENST00000415143 PABPN1Q86U42 306 aaKnown RBP eCLIP24.8■■□□□ 1.56
SSR4P1-201ENST00000415143 NACADO15069 1562 aa24.66■■□□□ 1.54
SSR4P1-201ENST00000415143 UNC13AQ9UPW8 1703 aa24.58■■□□□ 1.53
SSR4P1-201ENST00000415143 ZCCHC6Q5VYS8 1495 aaKnown RBP24.45■■□□□ 1.51
SSR4P1-201ENST00000415143 DCAF8L2P0C7V8 631 aa24.43■■□□□ 1.5
SSR4P1-201ENST00000415143 DNAJC5Q9H3Z4 198 aa24.4■■□□□ 1.5
SSR4P1-201ENST00000415143 BICRAQ9NZM4 1560 aa24.38■■□□□ 1.49
SSR4P1-201ENST00000415143 CECR2Q9BXF3 1484 aa24.2■■□□□ 1.47
SSR4P1-201ENST00000415143 MYO15BQ96JP2 1530 aa24.16■■□□□ 1.46
SSR4P1-201ENST00000415143 CC2D2AQ9P2K1 1620 aa24.15■■□□□ 1.46
SSR4P1-201ENST00000415143 DCAF1Q9Y4B6 1507 aa24.08■■□□□ 1.45
SSR4P1-201ENST00000415143 SHROOM4Q9ULL8 1493 aa23.95■■□□□ 1.42
SSR4P1-201ENST00000415143 EIF4G1Q04637 1599 aaKnown RBP23.86■■□□□ 1.41
SSR4P1-201ENST00000415143 SCRIBQ14160 1630 aa23.59■■□□□ 1.37
SSR4P1-201ENST00000415143 CUX2O14529 1486 aa23.41■■□□□ 1.34
SSR4P1-201ENST00000415143 SUPT5HO00267 1087 aaKnown RBP23.39■■□□□ 1.33
SSR4P1-201ENST00000415143 ERCC6Q03468 1493 aa23.2■■□□□ 1.3
SSR4P1-201ENST00000415143 TRIM41Q8WV44 630 aa23.05■■□□□ 1.28
SSR4P1-201ENST00000415143 NESP48681 1621 aa22.77■■□□□ 1.24
SSR4P1-201ENST00000415143 NCAPD3P42695 1498 aa22.76■■□□□ 1.23
SSR4P1-201ENST00000415143 THOC2Q8NI27 1593 aaKnown RBP22.7■■□□□ 1.22
SSR4P1-201ENST00000415143 RSF1Q96T23 1441 aaPredicted RBP22.69■■□□□ 1.22
SSR4P1-201ENST00000415143 CHIC1Q5VXU3 224 aa22.65■■□□□ 1.22
SSR4P1-201ENST00000415143 ATAD2BQ9ULI0 1458 aa22.6■■□□□ 1.21
SSR4P1-201ENST00000415143 SMARCA2P51531 1590 aa22.55■■□□□ 1.2
SSR4P1-201ENST00000415143 SMARCA4P51532 1647 aa22.54■■□□□ 1.2
SSR4P1-201ENST00000415143 HMGXB3Q12766 1538 aa22.53■■□□□ 1.2
SSR4P1-201ENST00000415143 BAZ1AQ9NRL2 1556 aaPredicted RBP22.5■■□□□ 1.19
SSR4P1-201ENST00000415143 KIF21AQ7Z4S6 1674 aa22.48■■□□□ 1.19
SSR4P1-201ENST00000415143 LAMC3Q9Y6N6 1575 aa22.42■■□□□ 1.18
SSR4P1-201ENST00000415143 MROH2BQ7Z745 1585 aa22.37■■□□□ 1.17
SSR4P1-201ENST00000415143 BAZ1BQ9UIG0 1483 aaKnown RBP22.35■■□□□ 1.17
SSR4P1-201ENST00000415143 PEG3Q9GZU2 1588 aa22.34■■□□□ 1.17
SSR4P1-201ENST00000415143 PDS5BQ9NTI5 1447 aa22.31■■□□□ 1.16
SSR4P1-201ENST00000415143 MRC2Q9UBG0 1479 aa22.2■■□□□ 1.14
SSR4P1-201ENST00000415143 OSCARQ8IYS5 282 aa22.19■■□□□ 1.14
SSR4P1-201ENST00000415143 WIZO95785 1651 aa22.19■■□□□ 1.14
SSR4P1-201ENST00000415143 WDR62O43379 1518 aa22.16■■□□□ 1.14
SSR4P1-201ENST00000415143 TOP2AP11388 1531 aaKnown RBP22.08■■□□□ 1.13
SSR4P1-201ENST00000415143 RIMBP3CA6NJZ7 1639 aa22.06■■□□□ 1.12
SSR4P1-201ENST00000415143 RIMBP3BA6NNM3 1639 aa22.06■■□□□ 1.12
SSR4P1-201ENST00000415143 RIMBP3Q9UFD9 1639 aa22.06■■□□□ 1.12
SSR4P1-201ENST00000415143 CADPSQ9ULU8 1353 aa22.04■■□□□ 1.12
SSR4P1-201ENST00000415143 CEP164Q9UPV0 1460 aa21.94■■□□□ 1.1
SSR4P1-201ENST00000415143 ARHGEF11O15085 1522 aa21.87■■□□□ 1.09
SSR4P1-201ENST00000415143 AEBP2Q6ZN18 517 aaPredicted RBP21.86■■□□□ 1.09
SSR4P1-201ENST00000415143 TRHP20396 242 aaPredicted RBP21.85■■□□□ 1.09
SSR4P1-201ENST00000415143 CCDC88BA6NC98 1476 aa21.84■■□□□ 1.09
SSR4P1-201ENST00000415143 FANCD2Q9BXW9 1451 aa21.83■■□□□ 1.08
SSR4P1-201ENST00000415143 CYB5RLQ6IPT4 315 aa21.77■■□□□ 1.08
SSR4P1-201ENST00000415143 LOC105371045A0A1W2PR82 267 aa21.72■■□□□ 1.07
SSR4P1-201ENST00000415143 URB2Q14146 1524 aaKnown RBP21.71■■□□□ 1.07
SSR4P1-201ENST00000415143 CFTRP13569 1480 aa21.61■■□□□ 1.05
SSR4P1-201ENST00000415143 ARAP1Q96P48 1450 aa21.6■■□□□ 1.05
SSR4P1-201ENST00000415143 ZNF608Q9ULD9 1512 aaPredicted RBP21.6■■□□□ 1.05
SSR4P1-201ENST00000415143 FAM9AQ8IZU1 332 aaPredicted RBP21.54■■□□□ 1.04
SSR4P1-201ENST00000415143 PRDM2Q13029 1718 aa21.53■■□□□ 1.04
SSR4P1-201ENST00000415143 IFT140Q96RY7 1462 aa21.51■■□□□ 1.03
SSR4P1-201ENST00000415143 EEA1Q15075 1411 aa21.49■■□□□ 1.03
SSR4P1-201ENST00000415143 CHD1O14646 1710 aa21.49■■□□□ 1.03
SSR4P1-201ENST00000415143 EIF4G3O43432 1585 aaKnown RBP21.44■■□□□ 1.02
SSR4P1-201ENST00000415143 ABCC8Q09428 1581 aa21.44■■□□□ 1.02
SSR4P1-201ENST00000415143 WRNQ14191 1432 aaPredicted RBP eCLIP21.41■■□□□ 1.02
SSR4P1-201ENST00000415143 FBLN2P98095 1184 aa21.36■■□□□ 1.01
SSR4P1-201ENST00000415143 TRIM26Q12899 539 aaPredicted RBP21.33■■□□□ 1.01
SSR4P1-201ENST00000415143 PCGF6Q9BYE7 350 aa21.33■■□□□ 1.01
SSR4P1-201ENST00000415143 TOPBP1Q92547 1522 aa21.31■■□□□ 1
SSR4P1-201ENST00000415143 AQRO60306 1485 aaKnown RBP eCLIP21.29■■□□□ 1
SSR4P1-201ENST00000415143 CSRNP3Q8WYN3 585 aa21.26■□□□□ 0.99
SSR4P1-201ENST00000415143 SOGA1O94964 1423 aa21.2■□□□□ 0.98
SSR4P1-201ENST00000415143 TARBP1Q13395 1621 aaKnown RBP21.19■□□□□ 0.98
SSR4P1-201ENST00000415143 HRCP23327 699 aa21.17■□□□□ 0.98
SSR4P1-201ENST00000415143 TNIKQ9UKE5 1360 aa21.17■□□□□ 0.98
SSR4P1-201ENST00000415143 SYNJ1O43426 1573 aa21.16■□□□□ 0.98
SSR4P1-201ENST00000415143 DNMBPQ6XZF7 1577 aa21.16■□□□□ 0.98
SSR4P1-201ENST00000415143 CLASP1Q7Z460 1538 aa21.16■□□□□ 0.98
SSR4P1-201ENST00000415143 EHMT2Q96KQ7 1210 aa21.15■□□□□ 0.98
SSR4P1-201ENST00000415143 GOLGA3Q08378 1498 aa21.13■□□□□ 0.97
SSR4P1-201ENST00000415143 TOP2BQ02880 1626 aa21.12■□□□□ 0.97
SSR4P1-201ENST00000415143 BIVM-ERCC5R4GMW8 1640 aa21.08■□□□□ 0.97
SSR4P1-201ENST00000415143 UBTFP17480 764 aaKnown RBP21.05■□□□□ 0.96
SSR4P1-201ENST00000415143 SNAPC4Q5SXM2 1469 aa21.05■□□□□ 0.96
SSR4P1-201ENST00000415143 ILDR1Q86SU0 546 aaPredicted RBP21.04■□□□□ 0.96
SSR4P1-201ENST00000415143 POLA1P09884 1462 aaPredicted RBP21.04■□□□□ 0.96
SSR4P1-201ENST00000415143 KIF21BO75037 1637 aa21.04■□□□□ 0.96
SSR4P1-201ENST00000415143 CHMP7Q8WUX9 453 aaPredicted RBP21.02■□□□□ 0.96
SSR4P1-201ENST00000415143 RUSC2Q8N2Y8 1516 aa21.02■□□□□ 0.96
SSR4P1-201ENST00000415143 GAPVD1Q14C86 1478 aa21.01■□□□□ 0.95
SSR4P1-201ENST00000415143 TDRD9Q8NDG6 1382 aaKnown RBP21.01■□□□□ 0.95
SSR4P1-201ENST00000415143 CEP162Q5TB80 1403 aa21.01■□□□□ 0.95
SSR4P1-201ENST00000415143 RAD54L2Q9Y4B4 1467 aa21.01■□□□□ 0.95
SSR4P1-201ENST00000415143 CUX1P39880 1505 aa20.99■□□□□ 0.95
SSR4P1-201ENST00000415143 MAGI1Q96QZ7 1491 aaPredicted RBP20.92■□□□□ 0.94
SSR4P1-201ENST00000415143 ZEB1P37275 1124 aaPredicted RBP20.91■□□□□ 0.94
SSR4P1-201ENST00000415143 FGD5Q6ZNL6 1462 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms