RNA–Protein interactions for RNA: ENST00000399004.6

GIN1-201, Transcript of gypsy retrotransposon integrase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GIN1, Length 3,229 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GIN1-201ENST00000399004 NISCHQ9Y2I1 1504 aa19.19■□□□□ 0.66
GIN1-201ENST00000399004 CCDC180Q9P1Z9 1646 aa16.82■□□□□ 0.28
GIN1-201ENST00000399004 ZCCHC6Q5VYS8 1495 aaKnown RBP16.33■□□□□ 0.2
GIN1-201ENST00000399004 DCAF1Q9Y4B6 1507 aa16.18■□□□□ 0.18
GIN1-201ENST00000399004 AEBP2Q6ZN18 517 aaPredicted RBP15.95■□□□□ 0.14
GIN1-201ENST00000399004 MYO15BQ96JP2 1530 aa15.83■□□□□ 0.12
GIN1-201ENST00000399004 CHIC1Q5VXU3 224 aa15.61■□□□□ 0.09
GIN1-201ENST00000399004 ABCC9O60706 1549 aa15.45■□□□□ 0.06
GIN1-201ENST00000399004 SHROOM4Q9ULL8 1493 aa15.33■□□□□ 0.04
GIN1-201ENST00000399004 NACADO15069 1562 aa15.3■□□□□ 0.04
GIN1-201ENST00000399004 SUPT5HO00267 1087 aaKnown RBP15.22■□□□□ 0.03
GIN1-201ENST00000399004 SCRIBQ14160 1630 aa15.04■□□□□ -0
GIN1-201ENST00000399004 RB1CC1Q8TDY2 1594 aa15.02□□□□□ -0.01
GIN1-201ENST00000399004 UNC13AQ9UPW8 1703 aa15□□□□□ -0.01
GIN1-201ENST00000399004 RSF1Q96T23 1441 aaPredicted RBP14.96□□□□□ -0.01
GIN1-201ENST00000399004 EIF4G1Q04637 1599 aaKnown RBP14.96□□□□□ -0.01
GIN1-201ENST00000399004 BAZ1AQ9NRL2 1556 aaPredicted RBP14.88□□□□□ -0.03
GIN1-201ENST00000399004 DCAF8L2P0C7V8 631 aa14.83□□□□□ -0.03
GIN1-201ENST00000399004 PCGF6Q9BYE7 350 aa14.83□□□□□ -0.03
GIN1-201ENST00000399004 PPARGC1BQ86YN6 1023 aaKnown RBP14.81□□□□□ -0.04
GIN1-201ENST00000399004 MROH2BQ7Z745 1585 aa14.75□□□□□ -0.05
GIN1-201ENST00000399004 PEG3Q9GZU2 1588 aa14.74□□□□□ -0.05
GIN1-201ENST00000399004 WIZO95785 1651 aa14.72□□□□□ -0.05
GIN1-201ENST00000399004 SMARCA4P51532 1647 aa14.7□□□□□ -0.06
GIN1-201ENST00000399004 CECR2Q9BXF3 1484 aa14.67□□□□□ -0.06
GIN1-201ENST00000399004 TOP2AP11388 1531 aaKnown RBP14.67□□□□□ -0.06
GIN1-201ENST00000399004 BICRAQ9NZM4 1560 aa14.65□□□□□ -0.06
GIN1-201ENST00000399004 HRCP23327 699 aa14.62□□□□□ -0.07
GIN1-201ENST00000399004 EHMT2Q96KQ7 1210 aa14.55□□□□□ -0.08
GIN1-201ENST00000399004 SMARCA2P51531 1590 aa14.54□□□□□ -0.08
GIN1-201ENST00000399004 LOC105371045A0A1W2PR82 267 aa14.45□□□□□ -0.1
GIN1-201ENST00000399004 CCDC88BA6NC98 1476 aa14.34□□□□□ -0.11
GIN1-201ENST00000399004 PRDM2Q13029 1718 aa14.27□□□□□ -0.13
GIN1-201ENST00000399004 FAM9AQ8IZU1 332 aaPredicted RBP14.25□□□□□ -0.13
GIN1-201ENST00000399004 HMGXB3Q12766 1538 aa14.21□□□□□ -0.13
GIN1-201ENST00000399004 BIVM-ERCC5R4GMW8 1640 aa14.21□□□□□ -0.13
GIN1-201ENST00000399004 EEA1Q15075 1411 aa14.2□□□□□ -0.14
GIN1-201ENST00000399004 WRNQ14191 1432 aaPredicted RBP eCLIP14.18□□□□□ -0.14
GIN1-201ENST00000399004 KIF21BO75037 1637 aa14.18□□□□□ -0.14
GIN1-201ENST00000399004 ATAD2BQ9ULI0 1458 aa14.17□□□□□ -0.14
GIN1-201ENST00000399004 ABCC8Q09428 1581 aa14.14□□□□□ -0.15
GIN1-201ENST00000399004 TTBK1Q5TCY1 1321 aaPredicted RBP14.1□□□□□ -0.15
GIN1-201ENST00000399004 SYNJ1O43426 1573 aa14.1□□□□□ -0.15
GIN1-201ENST00000399004 TOP2BQ02880 1626 aa14.1□□□□□ -0.15
GIN1-201ENST00000399004 TRIM41Q8WV44 630 aa14.07□□□□□ -0.16
GIN1-201ENST00000399004 TRIM26Q12899 539 aaPredicted RBP14.05□□□□□ -0.16
GIN1-201ENST00000399004 NCAPD3P42695 1498 aa14.04□□□□□ -0.16
GIN1-201ENST00000399004 BAZ1BQ9UIG0 1483 aaKnown RBP14□□□□□ -0.17
GIN1-201ENST00000399004 TNIKQ9UKE5 1360 aa13.99□□□□□ -0.17
GIN1-201ENST00000399004 PHF23Q9BUL5 403 aaPredicted RBP13.96□□□□□ -0.17
GIN1-201ENST00000399004 ERICH3Q5RHP9 1530 aa13.95□□□□□ -0.18
GIN1-201ENST00000399004 SCAF1Q9H7N4 1312 aaKnown RBP13.92□□□□□ -0.18
GIN1-201ENST00000399004 GOLGA3Q08378 1498 aa13.91□□□□□ -0.18
GIN1-201ENST00000399004 SOGA1O94964 1423 aa13.9□□□□□ -0.18
GIN1-201ENST00000399004 CEP164Q9UPV0 1460 aa13.87□□□□□ -0.19
GIN1-201ENST00000399004 DNAJC5BQ9UF47 199 aa13.87□□□□□ -0.19
GIN1-201ENST00000399004 RUSC2Q8N2Y8 1516 aa13.86□□□□□ -0.19
GIN1-201ENST00000399004 CFTRP13569 1480 aa13.86□□□□□ -0.19
GIN1-201ENST00000399004 CEP162Q5TB80 1403 aa13.86□□□□□ -0.19
GIN1-201ENST00000399004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.82□□□□□ -0.2
GIN1-201ENST00000399004 CUX1P39880 1505 aa13.8□□□□□ -0.2
GIN1-201ENST00000399004 PRXQ9BXM0 1461 aa13.8□□□□□ -0.2
GIN1-201ENST00000399004 ZEB1P37275 1124 aaPredicted RBP13.79□□□□□ -0.2
GIN1-201ENST00000399004 CUX2O14529 1486 aa13.77□□□□□ -0.21
GIN1-201ENST00000399004 DNAJC5Q9H3Z4 198 aa13.76□□□□□ -0.21
GIN1-201ENST00000399004 YTHDC1Q96MU7 727 aaKnown RBP13.75□□□□□ -0.21
GIN1-201ENST00000399004 CCER1Q8TC90 406 aaPredicted RBP13.74□□□□□ -0.21
GIN1-201ENST00000399004 WDR97A6NE52 1622 aa13.73□□□□□ -0.21
GIN1-201ENST00000399004 CSRNP3Q8WYN3 585 aa13.7□□□□□ -0.22
GIN1-201ENST00000399004 VPS8Q8N3P4 1428 aa13.67□□□□□ -0.22
GIN1-201ENST00000399004 PABPN1Q86U42 306 aaKnown RBP eCLIP13.67□□□□□ -0.22
GIN1-201ENST00000399004 PELP1Q8IZL8 1130 aaKnown RBP13.66□□□□□ -0.22
GIN1-201ENST00000399004 MAP3K1Q13233 1512 aa13.66□□□□□ -0.22
GIN1-201ENST00000399004 RAPGEF2Q9Y4G8 1499 aa13.66□□□□□ -0.22
GIN1-201ENST00000399004 NEUROD1Q13562 356 aa13.66□□□□□ -0.22
GIN1-201ENST00000399004 GTF3C3Q9Y5Q9 886 aa13.64□□□□□ -0.23
GIN1-201ENST00000399004 CC2D2AQ9P2K1 1620 aa13.62□□□□□ -0.23
GIN1-201ENST00000399004 ARAP1Q96P48 1450 aa13.62□□□□□ -0.23
GIN1-201ENST00000399004 CLIP1P30622 1438 aa13.59□□□□□ -0.23
GIN1-201ENST00000399004 CFAP43Q8NDM7 1665 aa13.59□□□□□ -0.23
GIN1-201ENST00000399004 DNMBPQ6XZF7 1577 aa13.57□□□□□ -0.24
GIN1-201ENST00000399004 CUL7Q14999 1698 aa13.56□□□□□ -0.24
GIN1-201ENST00000399004 CTTNBP2Q8WZ74 1663 aa13.54□□□□□ -0.24
GIN1-201ENST00000399004 LAMC3Q9Y6N6 1575 aa13.53□□□□□ -0.24
GIN1-201ENST00000399004 DIEXFQ68CQ4 756 aaKnown RBP13.52□□□□□ -0.24
GIN1-201ENST00000399004 ACIN1Q9UKV3 1341 aaKnown RBP13.52□□□□□ -0.24
GIN1-201ENST00000399004 KIF27Q86VH2 1401 aa13.51□□□□□ -0.25
GIN1-201ENST00000399004 CADPSQ9ULU8 1353 aa13.51□□□□□ -0.25
GIN1-201ENST00000399004 KIF21AQ7Z4S6 1674 aa13.51□□□□□ -0.25
GIN1-201ENST00000399004 ABCA5Q8WWZ7 1642 aa13.5□□□□□ -0.25
GIN1-201ENST00000399004 RANGAP1P46060 587 aaPredicted RBP13.5□□□□□ -0.25
GIN1-201ENST00000399004 ABCA10Q8WWZ4 1543 aa13.5□□□□□ -0.25
GIN1-201ENST00000399004 RRBP1Q9P2E9 1410 aaKnown RBP13.48□□□□□ -0.25
GIN1-201ENST00000399004 ARHGAP35Q9NRY4 1499 aa13.46□□□□□ -0.25
GIN1-201ENST00000399004 CENPBP07199 599 aaPredicted RBP13.46□□□□□ -0.25
GIN1-201ENST00000399004 EFCAB5A4FU69 1503 aa13.44□□□□□ -0.26
GIN1-201ENST00000399004 FGD5Q6ZNL6 1462 aa13.43□□□□□ -0.26
GIN1-201ENST00000399004 SAMD9Q5K651 1589 aa13.43□□□□□ -0.26
GIN1-201ENST00000399004 TIAM1Q13009 1591 aa13.43□□□□□ -0.26
GIN1-201ENST00000399004 AQRO60306 1485 aaKnown RBP eCLIP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms