RNA–Protein interactions for RNA: ENST00000398527.6

MSL3-207, Transcript of MSL complex subunit 3, humanhuman

TSL 2 BASIC

Gene MSL3, Length 2,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-207ENST00000398527 NISCHQ9Y2I1 1504 aa22.53■■□□□ 1.2
MSL3-207ENST00000398527 ABCC9O60706 1549 aa21.23■□□□□ 0.99
MSL3-207ENST00000398527 CCDC180Q9P1Z9 1646 aa20.58■□□□□ 0.89
MSL3-207ENST00000398527 DNAJC5BQ9UF47 199 aa20.56■□□□□ 0.88
MSL3-207ENST00000398527 RB1CC1Q8TDY2 1594 aa19.92■□□□□ 0.78
MSL3-207ENST00000398527 SLC24A1O60721 1099 aa19.68■□□□□ 0.74
MSL3-207ENST00000398527 NACADO15069 1562 aa19.62■□□□□ 0.73
MSL3-207ENST00000398527 PABPN1Q86U42 306 aaKnown RBP eCLIP19.62■□□□□ 0.73
MSL3-207ENST00000398527 UNC13AQ9UPW8 1703 aa19.46■□□□□ 0.71
MSL3-207ENST00000398527 MYT1Q01538 1121 aa19.44■□□□□ 0.7
MSL3-207ENST00000398527 DNAJC5Q9H3Z4 198 aa19.44■□□□□ 0.7
MSL3-207ENST00000398527 PELP1Q8IZL8 1130 aaKnown RBP19.4■□□□□ 0.7
MSL3-207ENST00000398527 BICRAQ9NZM4 1560 aa19.38■□□□□ 0.69
MSL3-207ENST00000398527 DCAF8L2P0C7V8 631 aa19.23■□□□□ 0.67
MSL3-207ENST00000398527 CECR2Q9BXF3 1484 aa19.22■□□□□ 0.67
MSL3-207ENST00000398527 CC2D2AQ9P2K1 1620 aa19.16■□□□□ 0.66
MSL3-207ENST00000398527 MYO15BQ96JP2 1530 aa19.12■□□□□ 0.65
MSL3-207ENST00000398527 SHROOM4Q9ULL8 1493 aa19.08■□□□□ 0.64
MSL3-207ENST00000398527 TTBK1Q5TCY1 1321 aaPredicted RBP19.06■□□□□ 0.64
MSL3-207ENST00000398527 EIF4G1Q04637 1599 aaKnown RBP18.95■□□□□ 0.62
MSL3-207ENST00000398527 PRKCSHP14314 528 aaPredicted RBP18.79■□□□□ 0.6
MSL3-207ENST00000398527 SCRIBQ14160 1630 aa18.66■□□□□ 0.58
MSL3-207ENST00000398527 CUX2O14529 1486 aa18.65■□□□□ 0.58
MSL3-207ENST00000398527 DCAF1Q9Y4B6 1507 aa18.61■□□□□ 0.57
MSL3-207ENST00000398527 APLP2Q06481 763 aa18.54■□□□□ 0.56
MSL3-207ENST00000398527 ZCCHC6Q5VYS8 1495 aaKnown RBP18.53■□□□□ 0.56
MSL3-207ENST00000398527 ERICH6Q7L0X2 663 aa18.43■□□□□ 0.54
MSL3-207ENST00000398527 DAXXQ9UER7 740 aaPredicted RBP18.41■□□□□ 0.54
MSL3-207ENST00000398527 ERCC6Q03468 1493 aa18.39■□□□□ 0.53
MSL3-207ENST00000398527 TRIM41Q8WV44 630 aa18.23■□□□□ 0.51
MSL3-207ENST00000398527 NCAPD3P42695 1498 aa18.11■□□□□ 0.49
MSL3-207ENST00000398527 THOC2Q8NI27 1593 aaKnown RBP18.04■□□□□ 0.48
MSL3-207ENST00000398527 NESP48681 1621 aa18.03■□□□□ 0.48
MSL3-207ENST00000398527 ATAD2BQ9ULI0 1458 aa17.94■□□□□ 0.46
MSL3-207ENST00000398527 HMGXB3Q12766 1538 aa17.92■□□□□ 0.46
MSL3-207ENST00000398527 SMARCA2P51531 1590 aa17.86■□□□□ 0.45
MSL3-207ENST00000398527 LAMC3Q9Y6N6 1575 aa17.82■□□□□ 0.44
MSL3-207ENST00000398527 KIF21AQ7Z4S6 1674 aa17.8■□□□□ 0.44
MSL3-207ENST00000398527 SMARCA4P51532 1647 aa17.74■□□□□ 0.43
MSL3-207ENST00000398527 PDS5BQ9NTI5 1447 aa17.73■□□□□ 0.43
MSL3-207ENST00000398527 BAZ1BQ9UIG0 1483 aaKnown RBP17.72■□□□□ 0.43
MSL3-207ENST00000398527 BAZ1AQ9NRL2 1556 aaPredicted RBP17.71■□□□□ 0.43
MSL3-207ENST00000398527 MRC2Q9UBG0 1479 aa17.63■□□□□ 0.41
MSL3-207ENST00000398527 WDR62O43379 1518 aa17.62■□□□□ 0.41
MSL3-207ENST00000398527 OSCARQ8IYS5 282 aa17.61■□□□□ 0.41
MSL3-207ENST00000398527 PEG3Q9GZU2 1588 aa17.6■□□□□ 0.41
MSL3-207ENST00000398527 BCL11AQ9H165 835 aa17.55■□□□□ 0.4
MSL3-207ENST00000398527 RIMBP3CA6NJZ7 1639 aa17.51■□□□□ 0.39
MSL3-207ENST00000398527 RIMBP3BA6NNM3 1639 aa17.51■□□□□ 0.39
MSL3-207ENST00000398527 RIMBP3Q9UFD9 1639 aa17.51■□□□□ 0.39
MSL3-207ENST00000398527 SUPT5HO00267 1087 aaKnown RBP17.5■□□□□ 0.39
MSL3-207ENST00000398527 CADPSQ9ULU8 1353 aa17.5■□□□□ 0.39
MSL3-207ENST00000398527 NCBP3Q53F19 620 aaKnown RBP17.45■□□□□ 0.38
MSL3-207ENST00000398527 EIF5BO60841 1220 aaKnown RBP17.44■□□□□ 0.38
MSL3-207ENST00000398527 CEP164Q9UPV0 1460 aa17.4■□□□□ 0.38
MSL3-207ENST00000398527 ARHGEF11O15085 1522 aa17.37■□□□□ 0.37
MSL3-207ENST00000398527 MROH2BQ7Z745 1585 aa17.34■□□□□ 0.37
MSL3-207ENST00000398527 AEBP2Q6ZN18 517 aaPredicted RBP17.33■□□□□ 0.36
MSL3-207ENST00000398527 FANCD2Q9BXW9 1451 aa17.31■□□□□ 0.36
MSL3-207ENST00000398527 TRHP20396 242 aaPredicted RBP17.27■□□□□ 0.36
MSL3-207ENST00000398527 FAM9AQ8IZU1 332 aaPredicted RBP17.25■□□□□ 0.35
MSL3-207ENST00000398527 CYB5RLQ6IPT4 315 aa17.23■□□□□ 0.35
MSL3-207ENST00000398527 URB2Q14146 1524 aaKnown RBP17.23■□□□□ 0.35
MSL3-207ENST00000398527 CHIC1Q5VXU3 224 aa17.22■□□□□ 0.35
MSL3-207ENST00000398527 PLPPR3Q6T4P5 718 aa17.18■□□□□ 0.34
MSL3-207ENST00000398527 CFTRP13569 1480 aa17.16■□□□□ 0.34
MSL3-207ENST00000398527 ARAP1Q96P48 1450 aa17.16■□□□□ 0.34
MSL3-207ENST00000398527 ZNF608Q9ULD9 1512 aaPredicted RBP17.12■□□□□ 0.33
MSL3-207ENST00000398527 IFT140Q96RY7 1462 aa17.09■□□□□ 0.33
MSL3-207ENST00000398527 WIZO95785 1651 aa17.09■□□□□ 0.33
MSL3-207ENST00000398527 RTN4Q9NQC3 1192 aaKnown RBP17.08■□□□□ 0.33
MSL3-207ENST00000398527 EHMT2Q96KQ7 1210 aa17.06■□□□□ 0.32
MSL3-207ENST00000398527 RSF1Q96T23 1441 aaPredicted RBP17.06■□□□□ 0.32
MSL3-207ENST00000398527 CHD1O14646 1710 aa17.01■□□□□ 0.31
MSL3-207ENST00000398527 EIF4G3O43432 1585 aaKnown RBP17■□□□□ 0.31
MSL3-207ENST00000398527 PLEKHG5O94827 1062 aa17■□□□□ 0.31
MSL3-207ENST00000398527 ARXQ96QS3 562 aa16.98■□□□□ 0.31
MSL3-207ENST00000398527 PRDM2Q13029 1718 aa16.95■□□□□ 0.3
MSL3-207ENST00000398527 TOPBP1Q92547 1522 aa16.9■□□□□ 0.3
MSL3-207ENST00000398527 TOP2AP11388 1531 aaKnown RBP16.85■□□□□ 0.29
MSL3-207ENST00000398527 AQRO60306 1485 aaKnown RBP eCLIP16.85■□□□□ 0.291e-7■■■■□ 19.5
MSL3-207ENST00000398527 FBLN2P98095 1184 aa16.85■□□□□ 0.29
MSL3-207ENST00000398527 ABCC8Q09428 1581 aa16.83■□□□□ 0.28
MSL3-207ENST00000398527 TARBP1Q13395 1621 aaKnown RBP16.83■□□□□ 0.28
MSL3-207ENST00000398527 CLASP1Q7Z460 1538 aa16.83■□□□□ 0.28
MSL3-207ENST00000398527 RANGAP1P46060 587 aaPredicted RBP16.8■□□□□ 0.28
MSL3-207ENST00000398527 DNMBPQ6XZF7 1577 aa16.79■□□□□ 0.28
MSL3-207ENST00000398527 TIMELESSQ9UNS1 1208 aa16.78■□□□□ 0.28
MSL3-207ENST00000398527 KLHL34Q8N239 644 aa16.76■□□□□ 0.27
MSL3-207ENST00000398527 SYNJ1O43426 1573 aa16.73■□□□□ 0.27
MSL3-207ENST00000398527 ILDR1Q86SU0 546 aaPredicted RBP16.71■□□□□ 0.27
MSL3-207ENST00000398527 POLA1P09884 1462 aaPredicted RBP16.68■□□□□ 0.26
MSL3-207ENST00000398527 SNAPC4Q5SXM2 1469 aa16.68■□□□□ 0.26
MSL3-207ENST00000398527 GAPVD1Q14C86 1478 aa16.67■□□□□ 0.26
MSL3-207ENST00000398527 SCAF1Q9H7N4 1312 aaKnown RBP16.66■□□□□ 0.26
MSL3-207ENST00000398527 CCDC88BA6NC98 1476 aa16.65■□□□□ 0.26
MSL3-207ENST00000398527 WDR97A6NE52 1622 aa16.63■□□□□ 0.25
MSL3-207ENST00000398527 CHMP7Q8WUX9 453 aaPredicted RBP16.63■□□□□ 0.25
MSL3-207ENST00000398527 MAGI1Q96QZ7 1491 aaPredicted RBP16.62■□□□□ 0.25
MSL3-207ENST00000398527 TDRD9Q8NDG6 1382 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms