RNA–Protein interactions for RNA: ENST00000397617.7

PTPRD-206, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 5 BASIC

Gene PTPRD, Length 8,248 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-206ENST00000397617 NISCHQ9Y2I1 1504 aa12.99□□□□□ -0.33
PTPRD-206ENST00000397617 CCDC180Q9P1Z9 1646 aa11.48□□□□□ -0.57
PTPRD-206ENST00000397617 DCAF1Q9Y4B6 1507 aa11.13□□□□□ -0.63
PTPRD-206ENST00000397617 MYO15BQ96JP2 1530 aa11.07□□□□□ -0.64
PTPRD-206ENST00000397617 ZCCHC6Q5VYS8 1495 aaKnown RBP10.98□□□□□ -0.65
PTPRD-206ENST00000397617 NACADO15069 1562 aa10.64□□□□□ -0.71
PTPRD-206ENST00000397617 SHROOM4Q9ULL8 1493 aa10.45□□□□□ -0.74
PTPRD-206ENST00000397617 RB1CC1Q8TDY2 1594 aa10.4□□□□□ -0.75
PTPRD-206ENST00000397617 ABCC9O60706 1549 aa10.27□□□□□ -0.77
PTPRD-206ENST00000397617 BAZ1AQ9NRL2 1556 aaPredicted RBP10.14□□□□□ -0.79
PTPRD-206ENST00000397617 PEG3Q9GZU2 1588 aa10.04□□□□□ -0.8
PTPRD-206ENST00000397617 DCAF8L2P0C7V8 631 aa10.04□□□□□ -0.8
PTPRD-206ENST00000397617 RSF1Q96T23 1441 aaPredicted RBP10.03□□□□□ -0.8
PTPRD-206ENST00000397617 SCRIBQ14160 1630 aa10.01□□□□□ -0.81
PTPRD-206ENST00000397617 SMARCA4P51532 1647 aa9.89□□□□□ -0.83
PTPRD-206ENST00000397617 SMARCA2P51531 1590 aa9.89□□□□□ -0.83
PTPRD-206ENST00000397617 BICRAQ9NZM4 1560 aa9.89□□□□□ -0.83
PTPRD-206ENST00000397617 UNC13AQ9UPW8 1703 aa9.87□□□□□ -0.83
PTPRD-206ENST00000397617 TOP2AP11388 1531 aaKnown RBP9.86□□□□□ -0.83
PTPRD-206ENST00000397617 SUPT5HO00267 1087 aaKnown RBP9.83□□□□□ -0.84
PTPRD-206ENST00000397617 HMGXB3Q12766 1538 aa9.82□□□□□ -0.84
PTPRD-206ENST00000397617 MROH2BQ7Z745 1585 aa9.82□□□□□ -0.84
PTPRD-206ENST00000397617 EEA1Q15075 1411 aa9.81□□□□□ -0.84
PTPRD-206ENST00000397617 CECR2Q9BXF3 1484 aa9.79□□□□□ -0.84
PTPRD-206ENST00000397617 NCAPD3P42695 1498 aa9.78□□□□□ -0.84
PTPRD-206ENST00000397617 CHIC1Q5VXU3 224 aa9.78□□□□□ -0.84
PTPRD-206ENST00000397617 ATAD2BQ9ULI0 1458 aa9.71□□□□□ -0.86
PTPRD-206ENST00000397617 EIF4G1Q04637 1599 aaKnown RBP9.69□□□□□ -0.86
PTPRD-206ENST00000397617 BAZ1BQ9UIG0 1483 aaKnown RBP9.65□□□□□ -0.86
PTPRD-206ENST00000397617 WIZO95785 1651 aa9.64□□□□□ -0.87
PTPRD-206ENST00000397617 CCDC88BA6NC98 1476 aa9.58□□□□□ -0.88
PTPRD-206ENST00000397617 CFTRP13569 1480 aa9.54□□□□□ -0.88
PTPRD-206ENST00000397617 TRIM41Q8WV44 630 aa9.51□□□□□ -0.89
PTPRD-206ENST00000397617 ABCC8Q09428 1581 aa9.5□□□□□ -0.89
PTPRD-206ENST00000397617 WRNQ14191 1432 aaPredicted RBP eCLIP9.5□□□□□ -0.89
PTPRD-206ENST00000397617 PRDM2Q13029 1718 aa9.48□□□□□ -0.89
PTPRD-206ENST00000397617 TOP2BQ02880 1626 aa9.44□□□□□ -0.9
PTPRD-206ENST00000397617 CADPSQ9ULU8 1353 aa9.43□□□□□ -0.9
PTPRD-206ENST00000397617 BIVM-ERCC5R4GMW8 1640 aa9.43□□□□□ -0.9
PTPRD-206ENST00000397617 ERICH3Q5RHP9 1530 aa9.42□□□□□ -0.9
PTPRD-206ENST00000397617 CEP164Q9UPV0 1460 aa9.41□□□□□ -0.9
PTPRD-206ENST00000397617 KIF21BO75037 1637 aa9.4□□□□□ -0.9
PTPRD-206ENST00000397617 TNIKQ9UKE5 1360 aa9.4□□□□□ -0.9
PTPRD-206ENST00000397617 LAMC3Q9Y6N6 1575 aa9.4□□□□□ -0.91
PTPRD-206ENST00000397617 PABPN1Q86U42 306 aaKnown RBP eCLIP9.38□□□□□ -0.91
PTPRD-206ENST00000397617 GOLGA3Q08378 1498 aa9.35□□□□□ -0.91
PTPRD-206ENST00000397617 WDR97A6NE52 1622 aa9.35□□□□□ -0.91
PTPRD-206ENST00000397617 CSRNP3Q8WYN3 585 aa9.34□□□□□ -0.91
PTPRD-206ENST00000397617 KIF27Q86VH2 1401 aa9.34□□□□□ -0.91
PTPRD-206ENST00000397617 PDS5BQ9NTI5 1447 aa9.31□□□□□ -0.92
PTPRD-206ENST00000397617 PRXQ9BXM0 1461 aa9.31□□□□□ -0.92
PTPRD-206ENST00000397617 CC2D2AQ9P2K1 1620 aa9.3□□□□□ -0.92
PTPRD-206ENST00000397617 DNMBPQ6XZF7 1577 aa9.27□□□□□ -0.93
PTPRD-206ENST00000397617 SYNJ1O43426 1573 aa9.27□□□□□ -0.93
PTPRD-206ENST00000397617 ABCA10Q8WWZ4 1543 aa9.24□□□□□ -0.93
PTPRD-206ENST00000397617 MAP3K1Q13233 1512 aa9.24□□□□□ -0.93
PTPRD-206ENST00000397617 ZEB1P37275 1124 aaPredicted RBP9.21□□□□□ -0.94
PTPRD-206ENST00000397617 TRIM26Q12899 539 aaPredicted RBP9.2□□□□□ -0.94
PTPRD-206ENST00000397617 FANCD2Q9BXW9 1451 aa9.2□□□□□ -0.94
PTPRD-206ENST00000397617 ACIN1Q9UKV3 1341 aaKnown RBP9.19□□□□□ -0.94
PTPRD-206ENST00000397617 CUX1P39880 1505 aa9.19□□□□□ -0.94
PTPRD-206ENST00000397617 VPS8Q8N3P4 1428 aa9.19□□□□□ -0.94
PTPRD-206ENST00000397617 CUL7Q14999 1698 aa9.19□□□□□ -0.94
PTPRD-206ENST00000397617 CEP162Q5TB80 1403 aa9.18□□□□□ -0.94
PTPRD-206ENST00000397617 EFCAB5A4FU69 1503 aa9.16□□□□□ -0.94
PTPRD-206ENST00000397617 TOPBP1Q92547 1522 aa9.15□□□□□ -0.94
PTPRD-206ENST00000397617 FHAD1B1AJZ9 1412 aa9.15□□□□□ -0.94
PTPRD-206ENST00000397617 CLIP1P30622 1438 aa9.15□□□□□ -0.94
PTPRD-206ENST00000397617 SOGA1O94964 1423 aa9.14□□□□□ -0.95
PTPRD-206ENST00000397617 AQRO60306 1485 aaKnown RBP eCLIP9.13□□□□□ -0.95
PTPRD-206ENST00000397617 RAPGEF2Q9Y4G8 1499 aa9.12□□□□□ -0.95
PTPRD-206ENST00000397617 FGD5Q6ZNL6 1462 aa9.12□□□□□ -0.95
PTPRD-206ENST00000397617 CLSPNQ9HAW4 1339 aa9.12□□□□□ -0.95
PTPRD-206ENST00000397617 POLA1P09884 1462 aaPredicted RBP9.11□□□□□ -0.95
PTPRD-206ENST00000397617 IGF1RP08069 1367 aa9.09□□□□□ -0.95
PTPRD-206ENST00000397617 THOC2Q8NI27 1593 aaKnown RBP9.09□□□□□ -0.95
PTPRD-206ENST00000397617 CUX2O14529 1486 aa9.08□□□□□ -0.96
PTPRD-206ENST00000397617 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.07□□□□□ -0.96
PTPRD-206ENST00000397617 CARMIL1Q5VZK9 1371 aa9.06□□□□□ -0.96
PTPRD-206ENST00000397617 ABCA5Q8WWZ7 1642 aa9.06□□□□□ -0.96
PTPRD-206ENST00000397617 MRC2Q9UBG0 1479 aa9.06□□□□□ -0.96
PTPRD-206ENST00000397617 IFT140Q96RY7 1462 aa9.06□□□□□ -0.96
PTPRD-206ENST00000397617 FMN1Q68DA7 1419 aa9.05□□□□□ -0.96
PTPRD-206ENST00000397617 WDR62O43379 1518 aa9.04□□□□□ -0.96
PTPRD-206ENST00000397617 KIF21AQ7Z4S6 1674 aa9.04□□□□□ -0.96
PTPRD-206ENST00000397617 LOC105371045A0A1W2PR82 267 aa9.02□□□□□ -0.96
PTPRD-206ENST00000397617 UBTFP17480 764 aaKnown RBP9.02□□□□□ -0.97
PTPRD-206ENST00000397617 HRCP23327 699 aa9.01□□□□□ -0.97
PTPRD-206ENST00000397617 APLP2Q06481 763 aa9.01□□□□□ -0.97
PTPRD-206ENST00000397617 GRIN2BQ13224 1484 aa9□□□□□ -0.97
PTPRD-206ENST00000397617 MAGI1Q96QZ7 1491 aaPredicted RBP9□□□□□ -0.97
PTPRD-206ENST00000397617 URB2Q14146 1524 aaKnown RBP9□□□□□ -0.97
PTPRD-206ENST00000397617 GAPVD1Q14C86 1478 aa9□□□□□ -0.97
PTPRD-206ENST00000397617 TARBP1Q13395 1621 aaKnown RBP8.99□□□□□ -0.97
PTPRD-206ENST00000397617 FYCO1Q9BQS8 1478 aa8.98□□□□□ -0.97
PTPRD-206ENST00000397617 RUSC2Q8N2Y8 1516 aa8.98□□□□□ -0.97
PTPRD-206ENST00000397617 FAM9AQ8IZU1 332 aaPredicted RBP8.96□□□□□ -0.97
PTPRD-206ENST00000397617 CASKIN1Q8WXD9 1431 aa8.95□□□□□ -0.98
PTPRD-206ENST00000397617 ARHGAP35Q9NRY4 1499 aa8.95□□□□□ -0.98
PTPRD-206ENST00000397617 SAMD9Q5K651 1589 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms