RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 AEBP2Q6ZN18 517 aaPredicted RBP25.06■■□□□ 1.6
CAPN3-208ENST00000397204 CHIC1Q5VXU3 224 aa24.19■■□□□ 1.46
CAPN3-208ENST00000397204 NISCHQ9Y2I1 1504 aa21.93■■□□□ 1.1
CAPN3-208ENST00000397204 PHF23Q9BUL5 403 aaPredicted RBP21.28■■□□□ 1
CAPN3-208ENST00000397204 SENP3Q9H4L4 574 aaPredicted RBP21.26■□□□□ 0.99
CAPN3-208ENST00000397204 ABCC9O60706 1549 aa19.82■□□□□ 0.76
CAPN3-208ENST00000397204 FOXD1Q16676 465 aa19.79■□□□□ 0.76
CAPN3-208ENST00000397204 CCDC180Q9P1Z9 1646 aa19.62■□□□□ 0.73
CAPN3-208ENST00000397204 PLPPR3Q6T4P5 718 aa19.53■□□□□ 0.72
CAPN3-208ENST00000397204 PPP6R1Q9UPN7 881 aa18.87■□□□□ 0.61
CAPN3-208ENST00000397204 ADRA2BP18089 450 aa18.84■□□□□ 0.61
CAPN3-208ENST00000397204 RB1CC1Q8TDY2 1594 aa18.81■□□□□ 0.6
CAPN3-208ENST00000397204 DNAJC5BQ9UF47 199 aa18.8■□□□□ 0.6
CAPN3-208ENST00000397204 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
CAPN3-208ENST00000397204 NACADO15069 1562 aa18.68■□□□□ 0.58
CAPN3-208ENST00000397204 PIAS4Q8N2W9 510 aaPredicted RBP18.61■□□□□ 0.57
CAPN3-208ENST00000397204 PABPN1Q86U42 306 aaKnown RBP eCLIP18.52■□□□□ 0.56
CAPN3-208ENST00000397204 MYO15BQ96JP2 1530 aa18.42■□□□□ 0.54
CAPN3-208ENST00000397204 MSH5O43196 834 aa18.31■□□□□ 0.52
CAPN3-208ENST00000397204 BICRAQ9NZM4 1560 aa18.23■□□□□ 0.51
CAPN3-208ENST00000397204 UNC13AQ9UPW8 1703 aa18.23■□□□□ 0.51
CAPN3-208ENST00000397204 DCAF1Q9Y4B6 1507 aa18.12■□□□□ 0.49
CAPN3-208ENST00000397204 ZCCHC6Q5VYS8 1495 aaKnown RBP18.1■□□□□ 0.49
CAPN3-208ENST00000397204 SHROOM4Q9ULL8 1493 aa18.04■□□□□ 0.48
CAPN3-208ENST00000397204 CECR2Q9BXF3 1484 aa17.9■□□□□ 0.46
CAPN3-208ENST00000397204 SCRIBQ14160 1630 aa17.87■□□□□ 0.45
CAPN3-208ENST00000397204 CC2D2AQ9P2K1 1620 aa17.86■□□□□ 0.45
CAPN3-208ENST00000397204 EIF4G1Q04637 1599 aaKnown RBP17.81■□□□□ 0.44
CAPN3-208ENST00000397204 DNAJC5Q9H3Z4 198 aa17.4■□□□□ 0.38
CAPN3-208ENST00000397204 NCAPD3P42695 1498 aa17.3■□□□□ 0.36
CAPN3-208ENST00000397204 ATAD2BQ9ULI0 1458 aa17.2■□□□□ 0.34
CAPN3-208ENST00000397204 PPP4R3CPQ6ZMV5 832 aa17.19■□□□□ 0.34
CAPN3-208ENST00000397204 MAPK8IP2Q13387 824 aaPredicted RBP17.18■□□□□ 0.34
CAPN3-208ENST00000397204 SCAF1Q9H7N4 1312 aaKnown RBP17.18■□□□□ 0.34
CAPN3-208ENST00000397204 CUX2O14529 1486 aa17.16■□□□□ 0.34
CAPN3-208ENST00000397204 POTEDQ86YR6 584 aa17.15■□□□□ 0.34
CAPN3-208ENST00000397204 ERCC6Q03468 1493 aa17.14■□□□□ 0.33
CAPN3-208ENST00000397204 SMARCA2P51531 1590 aa17.11■□□□□ 0.33
CAPN3-208ENST00000397204 HMGXB3Q12766 1538 aa17.07■□□□□ 0.32
CAPN3-208ENST00000397204 SMARCA4P51532 1647 aa17.06■□□□□ 0.32
CAPN3-208ENST00000397204 BAZ1AQ9NRL2 1556 aaPredicted RBP17.01■□□□□ 0.31
CAPN3-208ENST00000397204 BAZ1BQ9UIG0 1483 aaKnown RBP16.99■□□□□ 0.31
CAPN3-208ENST00000397204 NESP48681 1621 aa16.98■□□□□ 0.31
CAPN3-208ENST00000397204 DMRT2Q9Y5R5 561 aa16.94■□□□□ 0.3
CAPN3-208ENST00000397204 PEG3Q9GZU2 1588 aa16.94■□□□□ 0.3
CAPN3-208ENST00000397204 MROH2BQ7Z745 1585 aa16.87■□□□□ 0.29
CAPN3-208ENST00000397204 PDS5BQ9NTI5 1447 aa16.85■□□□□ 0.29
CAPN3-208ENST00000397204 LAMC3Q9Y6N6 1575 aa16.85■□□□□ 0.29
CAPN3-208ENST00000397204 CADPSQ9ULU8 1353 aa16.78■□□□□ 0.28
CAPN3-208ENST00000397204 THOC2Q8NI27 1593 aaKnown RBP16.76■□□□□ 0.27
CAPN3-208ENST00000397204 CNKSR2Q8WXI2 1034 aa16.75■□□□□ 0.27
CAPN3-208ENST00000397204 KIF21AQ7Z4S6 1674 aa16.65■□□□□ 0.26
CAPN3-208ENST00000397204 NCBP3Q53F19 620 aaKnown RBP16.64■□□□□ 0.25
CAPN3-208ENST00000397204 MRC2Q9UBG0 1479 aa16.63■□□□□ 0.25
CAPN3-208ENST00000397204 WIZO95785 1651 aa16.59■□□□□ 0.25
CAPN3-208ENST00000397204 WDR62O43379 1518 aa16.55■□□□□ 0.24
CAPN3-208ENST00000397204 CEP164Q9UPV0 1460 aa16.54■□□□□ 0.24
CAPN3-208ENST00000397204 FANCD2Q9BXW9 1451 aa16.54■□□□□ 0.24
CAPN3-208ENST00000397204 RSF1Q96T23 1441 aaPredicted RBP16.53■□□□□ 0.24
CAPN3-208ENST00000397204 KCNA4P22459 653 aa16.53■□□□□ 0.24
CAPN3-208ENST00000397204 TRIM41Q8WV44 630 aa16.53■□□□□ 0.24
CAPN3-208ENST00000397204 CFTRP13569 1480 aa16.53■□□□□ 0.24
CAPN3-208ENST00000397204 HOXD11P31277 338 aaPredicted RBP16.48■□□□□ 0.23
CAPN3-208ENST00000397204 RNF216Q9NWF9 866 aaPredicted RBP16.48■□□□□ 0.23
CAPN3-208ENST00000397204 OSCARQ8IYS5 282 aa16.47■□□□□ 0.23
CAPN3-208ENST00000397204 NPM3O75607 178 aaKnown RBP16.43■□□□□ 0.22
CAPN3-208ENST00000397204 TOP2AP11388 1531 aaKnown RBP16.42■□□□□ 0.22
CAPN3-208ENST00000397204 URB2Q14146 1524 aaKnown RBP16.38■□□□□ 0.21
CAPN3-208ENST00000397204 CCDC88BA6NC98 1476 aa16.3■□□□□ 0.2
CAPN3-208ENST00000397204 DCAF8L1A6NGE4 600 aa16.27■□□□□ 0.2
CAPN3-208ENST00000397204 IFT140Q96RY7 1462 aa16.25■□□□□ 0.19
CAPN3-208ENST00000397204 ABCC8Q09428 1581 aa16.21■□□□□ 0.19
CAPN3-208ENST00000397204 ZNF608Q9ULD9 1512 aaPredicted RBP16.19■□□□□ 0.18
CAPN3-208ENST00000397204 TOPBP1Q92547 1522 aa16.19■□□□□ 0.18
CAPN3-208ENST00000397204 PRDM2Q13029 1718 aa16.15■□□□□ 0.18
CAPN3-208ENST00000397204 AQRO60306 1485 aaKnown RBP eCLIP16.09■□□□□ 0.17
CAPN3-208ENST00000397204 DNMBPQ6XZF7 1577 aa16.09■□□□□ 0.17
CAPN3-208ENST00000397204 CYB5RLQ6IPT4 315 aa16.08■□□□□ 0.16
CAPN3-208ENST00000397204 RIMBP3CA6NJZ7 1639 aa16.08■□□□□ 0.16
CAPN3-208ENST00000397204 RIMBP3BA6NNM3 1639 aa16.08■□□□□ 0.16
CAPN3-208ENST00000397204 RIMBP3Q9UFD9 1639 aa16.08■□□□□ 0.16
CAPN3-208ENST00000397204 ARHGEF11O15085 1522 aa16.06■□□□□ 0.16
CAPN3-208ENST00000397204 FBLN2P98095 1184 aa16.06■□□□□ 0.16
CAPN3-208ENST00000397204 EIF4G3O43432 1585 aaKnown RBP16.02■□□□□ 0.16
CAPN3-208ENST00000397204 POLA1P09884 1462 aaPredicted RBP16.02■□□□□ 0.15
CAPN3-208ENST00000397204 SOGA1O94964 1423 aa16.02■□□□□ 0.15
CAPN3-208ENST00000397204 TARBP1Q13395 1621 aaKnown RBP16.01■□□□□ 0.15
CAPN3-208ENST00000397204 TDRD9Q8NDG6 1382 aaKnown RBP16■□□□□ 0.15
CAPN3-208ENST00000397204 RAD54L2Q9Y4B4 1467 aa15.97■□□□□ 0.15
CAPN3-208ENST00000397204 CHMP7Q8WUX9 453 aaPredicted RBP15.94■□□□□ 0.14
CAPN3-208ENST00000397204 TRHP20396 242 aaPredicted RBP15.92■□□□□ 0.14
CAPN3-208ENST00000397204 FGD5Q6ZNL6 1462 aa15.89■□□□□ 0.13
CAPN3-208ENST00000397204 ARAP1Q96P48 1450 aa15.89■□□□□ 0.13
CAPN3-208ENST00000397204 CHD1O14646 1710 aa15.88■□□□□ 0.13
CAPN3-208ENST00000397204 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
CAPN3-208ENST00000397204 GRIN2BQ13224 1484 aa15.85■□□□□ 0.13
CAPN3-208ENST00000397204 SNAPC4Q5SXM2 1469 aa15.85■□□□□ 0.13
CAPN3-208ENST00000397204 MAGI1Q96QZ7 1491 aaPredicted RBP15.84■□□□□ 0.13
CAPN3-208ENST00000397204 CUX1P39880 1505 aa15.84■□□□□ 0.13
CAPN3-208ENST00000397204 SYNJ2O15056 1496 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms