RNA–Protein interactions for RNA: ENST00000396547.5

TRIM39-203, Transcript of tripartite motif containing 39, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene TRIM39, Length 3,187 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-203ENST00000396547 NISCHQ9Y2I1 1504 aa20.5■□□□□ 0.87
TRIM39-203ENST00000396547 CCDC180Q9P1Z9 1646 aa18.49■□□□□ 0.55
TRIM39-203ENST00000396547 ABCC9O60706 1549 aa17.49■□□□□ 0.39
TRIM39-203ENST00000396547 MYO15BQ96JP2 1530 aa17.37■□□□□ 0.37
TRIM39-203ENST00000396547 NACADO15069 1562 aa17.26■□□□□ 0.35
TRIM39-203ENST00000396547 DCAF1Q9Y4B6 1507 aa17.25■□□□□ 0.35
TRIM39-203ENST00000396547 RB1CC1Q8TDY2 1594 aa17.19■□□□□ 0.34
TRIM39-203ENST00000396547 ZCCHC6Q5VYS8 1495 aaKnown RBP17.14■□□□□ 0.33
TRIM39-203ENST00000396547 UNC13AQ9UPW8 1703 aa16.87■□□□□ 0.29
TRIM39-203ENST00000396547 SHROOM4Q9ULL8 1493 aa16.84■□□□□ 0.29
TRIM39-203ENST00000396547 SUPT5HO00267 1087 aaKnown RBP16.77■□□□□ 0.27
TRIM39-203ENST00000396547 BICRAQ9NZM4 1560 aa16.69■□□□□ 0.26
TRIM39-203ENST00000396547 HRCP23327 699 aa16.46■□□□□ 0.23
TRIM39-203ENST00000396547 PCGF6Q9BYE7 350 aa16.43■□□□□ 0.22
TRIM39-203ENST00000396547 SCRIBQ14160 1630 aa16.43■□□□□ 0.22
TRIM39-203ENST00000396547 PPARGC1BQ86YN6 1023 aaKnown RBP16.38■□□□□ 0.21
TRIM39-203ENST00000396547 DCAF8L2P0C7V8 631 aa16.35■□□□□ 0.21
TRIM39-203ENST00000396547 CHIC1Q5VXU3 224 aa16.19■□□□□ 0.18
TRIM39-203ENST00000396547 EIF4G1Q04637 1599 aaKnown RBP16.17■□□□□ 0.18
TRIM39-203ENST00000396547 PABPN1Q86U42 306 aaKnown RBP eCLIP16.16■□□□□ 0.18
TRIM39-203ENST00000396547 CC2D2AQ9P2K1 1620 aa16.06■□□□□ 0.16
TRIM39-203ENST00000396547 LOC105371045A0A1W2PR82 267 aa16.01■□□□□ 0.15
TRIM39-203ENST00000396547 DNAJC5BQ9UF47 199 aa15.99■□□□□ 0.15
TRIM39-203ENST00000396547 PEG3Q9GZU2 1588 aa15.98■□□□□ 0.15
TRIM39-203ENST00000396547 SMARCA4P51532 1647 aa15.93■□□□□ 0.14
TRIM39-203ENST00000396547 BAZ1AQ9NRL2 1556 aaPredicted RBP15.91■□□□□ 0.14
TRIM39-203ENST00000396547 HMGXB3Q12766 1538 aa15.87■□□□□ 0.13
TRIM39-203ENST00000396547 NCAPD3P42695 1498 aa15.86■□□□□ 0.13
TRIM39-203ENST00000396547 SMARCA2P51531 1590 aa15.85■□□□□ 0.13
TRIM39-203ENST00000396547 CECR2Q9BXF3 1484 aa15.85■□□□□ 0.13
TRIM39-203ENST00000396547 ATAD2BQ9ULI0 1458 aa15.77■□□□□ 0.12
TRIM39-203ENST00000396547 TRIM26Q12899 539 aaPredicted RBP15.73■□□□□ 0.11
TRIM39-203ENST00000396547 EHMT2Q96KQ7 1210 aa15.72■□□□□ 0.11
TRIM39-203ENST00000396547 MROH2BQ7Z745 1585 aa15.69■□□□□ 0.1
TRIM39-203ENST00000396547 FAM9AQ8IZU1 332 aaPredicted RBP15.6■□□□□ 0.09
TRIM39-203ENST00000396547 SCAF1Q9H7N4 1312 aaKnown RBP15.58■□□□□ 0.08
TRIM39-203ENST00000396547 BAZ1BQ9UIG0 1483 aaKnown RBP15.57■□□□□ 0.08
TRIM39-203ENST00000396547 PELP1Q8IZL8 1130 aaKnown RBP15.56■□□□□ 0.08
TRIM39-203ENST00000396547 RSF1Q96T23 1441 aaPredicted RBP15.51■□□□□ 0.07
TRIM39-203ENST00000396547 WIZO95785 1651 aa15.51■□□□□ 0.07
TRIM39-203ENST00000396547 TOP2AP11388 1531 aaKnown RBP15.5■□□□□ 0.07
TRIM39-203ENST00000396547 ZEB1P37275 1124 aaPredicted RBP15.48■□□□□ 0.07
TRIM39-203ENST00000396547 LAMC3Q9Y6N6 1575 aa15.47■□□□□ 0.07
TRIM39-203ENST00000396547 PRDM2Q13029 1718 aa15.4■□□□□ 0.06
TRIM39-203ENST00000396547 TRIM41Q8WV44 630 aa15.38■□□□□ 0.05
TRIM39-203ENST00000396547 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.28■□□□□ 0.04
TRIM39-203ENST00000396547 CUX2O14529 1486 aa15.27■□□□□ 0.04
TRIM39-203ENST00000396547 TTBK1Q5TCY1 1321 aaPredicted RBP15.26■□□□□ 0.03
TRIM39-203ENST00000396547 CFTRP13569 1480 aa15.26■□□□□ 0.03
TRIM39-203ENST00000396547 THOC2Q8NI27 1593 aaKnown RBP15.26■□□□□ 0.03
TRIM39-203ENST00000396547 CADPSQ9ULU8 1353 aa15.25■□□□□ 0.03
TRIM39-203ENST00000396547 NEUROD1Q13562 356 aa15.24■□□□□ 0.03
TRIM39-203ENST00000396547 CCER1Q8TC90 406 aaPredicted RBP15.23■□□□□ 0.03
TRIM39-203ENST00000396547 KIF21AQ7Z4S6 1674 aa15.21■□□□□ 0.03
TRIM39-203ENST00000396547 ACIN1Q9UKV3 1341 aaKnown RBP15.2■□□□□ 0.02
TRIM39-203ENST00000396547 PDS5BQ9NTI5 1447 aa15.2■□□□□ 0.02
TRIM39-203ENST00000396547 GTF3C3Q9Y5Q9 886 aa15.19■□□□□ 0.02
TRIM39-203ENST00000396547 NESP48681 1621 aa15.18■□□□□ 0.02
TRIM39-203ENST00000396547 CCDC88BA6NC98 1476 aa15.17■□□□□ 0.02
TRIM39-203ENST00000396547 WDR62O43379 1518 aa15.16■□□□□ 0.02
TRIM39-203ENST00000396547 DIEXFQ68CQ4 756 aaKnown RBP15.1■□□□□ 0.01
TRIM39-203ENST00000396547 MRC2Q9UBG0 1479 aa15.09■□□□□ 0.01
TRIM39-203ENST00000396547 ERCC6Q03468 1493 aa15.09■□□□□ 0.01
TRIM39-203ENST00000396547 YTHDC1Q96MU7 727 aaKnown RBP15.08■□□□□ 0
TRIM39-203ENST00000396547 CENPBP07199 599 aaPredicted RBP15.07■□□□□ 0
TRIM39-203ENST00000396547 FANCD2Q9BXW9 1451 aa15.05■□□□□ 0
TRIM39-203ENST00000396547 CEP164Q9UPV0 1460 aa15.05■□□□□ 0
TRIM39-203ENST00000396547 ABCC8Q09428 1581 aa15.01□□□□□ -0.01
TRIM39-203ENST00000396547 WDR97A6NE52 1622 aa14.95□□□□□ -0.02
TRIM39-203ENST00000396547 DNMBPQ6XZF7 1577 aa14.94□□□□□ -0.02
TRIM39-203ENST00000396547 URB2Q14146 1524 aaKnown RBP14.94□□□□□ -0.02
TRIM39-203ENST00000396547 MYT1Q01538 1121 aa14.91□□□□□ -0.02
TRIM39-203ENST00000396547 TOPBP1Q92547 1522 aa14.86□□□□□ -0.03
TRIM39-203ENST00000396547 TARBP1Q13395 1621 aaKnown RBP14.83□□□□□ -0.04
TRIM39-203ENST00000396547 IFT140Q96RY7 1462 aa14.83□□□□□ -0.04
TRIM39-203ENST00000396547 BIVM-ERCC5R4GMW8 1640 aa14.82□□□□□ -0.04
TRIM39-203ENST00000396547 ZNF316A6NFI3 1004 aaPredicted RBP14.77□□□□□ -0.04
TRIM39-203ENST00000396547 CUX1P39880 1505 aa14.76□□□□□ -0.05
TRIM39-203ENST00000396547 MIER1Q8N108 512 aa14.75□□□□□ -0.05
TRIM39-203ENST00000396547 TOP2BQ02880 1626 aa14.74□□□□□ -0.05
TRIM39-203ENST00000396547 HNRNPUL2Q1KMD3 747 aaKnown RBP14.73□□□□□ -0.05
TRIM39-203ENST00000396547 UBTFP17480 764 aaKnown RBP14.71□□□□□ -0.06
TRIM39-203ENST00000396547 POLA1P09884 1462 aaPredicted RBP14.7□□□□□ -0.06
TRIM39-203ENST00000396547 EIF4G3O43432 1585 aaKnown RBP14.67□□□□□ -0.06
TRIM39-203ENST00000396547 ABCA10Q8WWZ4 1543 aa14.65□□□□□ -0.07
TRIM39-203ENST00000396547 ABCA5Q8WWZ7 1642 aa14.65□□□□□ -0.07
TRIM39-203ENST00000396547 FGD5Q6ZNL6 1462 aa14.64□□□□□ -0.07
TRIM39-203ENST00000396547 RANGAP1P46060 587 aaPredicted RBP14.63□□□□□ -0.07
TRIM39-203ENST00000396547 SYNJ1O43426 1573 aa14.61□□□□□ -0.07
TRIM39-203ENST00000396547 PBRM1Q86U86 1689 aa14.59□□□□□ -0.07
TRIM39-203ENST00000396547 WRNQ14191 1432 aaPredicted RBP eCLIP14.58□□□□□ -0.08
TRIM39-203ENST00000396547 ZNF608Q9ULD9 1512 aaPredicted RBP14.57□□□□□ -0.08
TRIM39-203ENST00000396547 SOGA1O94964 1423 aa14.56□□□□□ -0.08
TRIM39-203ENST00000396547 MAGI1Q96QZ7 1491 aaPredicted RBP14.55□□□□□ -0.08
TRIM39-203ENST00000396547 CEP162Q5TB80 1403 aa14.53□□□□□ -0.08
TRIM39-203ENST00000396547 DNAJC5Q9H3Z4 198 aa14.53□□□□□ -0.08
TRIM39-203ENST00000396547 ERICH3Q5RHP9 1530 aa14.51□□□□□ -0.09
TRIM39-203ENST00000396547 GRIN2BQ13224 1484 aa14.51□□□□□ -0.09
TRIM39-203ENST00000396547 RAD54L2Q9Y4B4 1467 aa14.5□□□□□ -0.09
TRIM39-203ENST00000396547 CHD1O14646 1710 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms