RNA–Protein interactions for RNA: ENST00000396354.5

NDE1-201, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-201ENST00000396354 NISCHQ9Y2I1 1504 aa19.71■□□□□ 0.75
NDE1-201ENST00000396354 CHIC1Q5VXU3 224 aa18.89■□□□□ 0.62
NDE1-201ENST00000396354 AEBP2Q6ZN18 517 aaPredicted RBP18.58■□□□□ 0.56
NDE1-201ENST00000396354 CCDC180Q9P1Z9 1646 aa16.87■□□□□ 0.29
NDE1-201ENST00000396354 PHF23Q9BUL5 403 aaPredicted RBP16.68■□□□□ 0.26
NDE1-201ENST00000396354 SHROOM4Q9ULL8 1493 aa16.66■□□□□ 0.26
NDE1-201ENST00000396354 ZCCHC6Q5VYS8 1495 aaKnown RBP16.64■□□□□ 0.25
NDE1-201ENST00000396354 DCAF8L2P0C7V8 631 aa16.31■□□□□ 0.2
NDE1-201ENST00000396354 ABCC9O60706 1549 aa16.29■□□□□ 0.2
NDE1-201ENST00000396354 SUPT5HO00267 1087 aaKnown RBP16.26■□□□□ 0.19
NDE1-201ENST00000396354 DCAF1Q9Y4B6 1507 aa16.12■□□□□ 0.17
NDE1-201ENST00000396354 SCRIBQ14160 1630 aa15.82■□□□□ 0.12
NDE1-201ENST00000396354 NACADO15069 1562 aa15.78■□□□□ 0.12
NDE1-201ENST00000396354 MYO15BQ96JP2 1530 aa15.75■□□□□ 0.11
NDE1-201ENST00000396354 RB1CC1Q8TDY2 1594 aa15.71■□□□□ 0.11
NDE1-201ENST00000396354 SENP3Q9H4L4 574 aaPredicted RBP15.67■□□□□ 0.1
NDE1-201ENST00000396354 PLPPR3Q6T4P5 718 aa15.65■□□□□ 0.1
NDE1-201ENST00000396354 RSF1Q96T23 1441 aaPredicted RBP15.52■□□□□ 0.07
NDE1-201ENST00000396354 PCGF6Q9BYE7 350 aa15.51■□□□□ 0.07
NDE1-201ENST00000396354 CECR2Q9BXF3 1484 aa15.46■□□□□ 0.07
NDE1-201ENST00000396354 UNC13AQ9UPW8 1703 aa15.43■□□□□ 0.06
NDE1-201ENST00000396354 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
NDE1-201ENST00000396354 MROH2BQ7Z745 1585 aa15.37■□□□□ 0.05
NDE1-201ENST00000396354 PABPN1Q86U42 306 aaKnown RBP eCLIP15.36■□□□□ 0.05
NDE1-201ENST00000396354 PPARGC1BQ86YN6 1023 aaKnown RBP15.35■□□□□ 0.05
NDE1-201ENST00000396354 LOC105371045A0A1W2PR82 267 aa15.34■□□□□ 0.05
NDE1-201ENST00000396354 WIZO95785 1651 aa15.28■□□□□ 0.04
NDE1-201ENST00000396354 BICRAQ9NZM4 1560 aa15.28■□□□□ 0.04
NDE1-201ENST00000396354 HRCP23327 699 aa15.21■□□□□ 0.02
NDE1-201ENST00000396354 FAM9AQ8IZU1 332 aaPredicted RBP15.19■□□□□ 0.02
NDE1-201ENST00000396354 BAZ1AQ9NRL2 1556 aaPredicted RBP15.11■□□□□ 0.01
NDE1-201ENST00000396354 SMARCA4P51532 1647 aa15.08■□□□□ 0
NDE1-201ENST00000396354 EIF4G1Q04637 1599 aaKnown RBP15.02■□□□□ -0
NDE1-201ENST00000396354 TRIM41Q8WV44 630 aa14.99□□□□□ -0.01
NDE1-201ENST00000396354 TOP2AP11388 1531 aaKnown RBP14.97□□□□□ -0.01
NDE1-201ENST00000396354 CCDC88BA6NC98 1476 aa14.92□□□□□ -0.02
NDE1-201ENST00000396354 SMARCA2P51531 1590 aa14.92□□□□□ -0.02
NDE1-201ENST00000396354 TTBK1Q5TCY1 1321 aaPredicted RBP14.89□□□□□ -0.03
NDE1-201ENST00000396354 ABCC8Q09428 1581 aa14.86□□□□□ -0.03
NDE1-201ENST00000396354 PEG3Q9GZU2 1588 aa14.79□□□□□ -0.04
NDE1-201ENST00000396354 TRIM26Q12899 539 aaPredicted RBP14.76□□□□□ -0.05
NDE1-201ENST00000396354 ATAD2BQ9ULI0 1458 aa14.73□□□□□ -0.05
NDE1-201ENST00000396354 CC2D2AQ9P2K1 1620 aa14.68□□□□□ -0.06
NDE1-201ENST00000396354 SOGA1O94964 1423 aa14.64□□□□□ -0.07
NDE1-201ENST00000396354 BAZ1BQ9UIG0 1483 aaKnown RBP14.64□□□□□ -0.07
NDE1-201ENST00000396354 RUSC2Q8N2Y8 1516 aa14.63□□□□□ -0.07
NDE1-201ENST00000396354 DNAJC5BQ9UF47 199 aa14.58□□□□□ -0.08
NDE1-201ENST00000396354 NCAPD3P42695 1498 aa14.58□□□□□ -0.08
NDE1-201ENST00000396354 SYNJ1O43426 1573 aa14.58□□□□□ -0.08
NDE1-201ENST00000396354 ADRA2BP18089 450 aa14.56□□□□□ -0.08
NDE1-201ENST00000396354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.54□□□□□ -0.08
NDE1-201ENST00000396354 HMGXB3Q12766 1538 aa14.53□□□□□ -0.08
NDE1-201ENST00000396354 WRNQ14191 1432 aaPredicted RBP eCLIP14.53□□□□□ -0.08
NDE1-201ENST00000396354 CCER1Q8TC90 406 aaPredicted RBP14.44□□□□□ -0.1
NDE1-201ENST00000396354 RANGAP1P46060 587 aaPredicted RBP14.44□□□□□ -0.1
NDE1-201ENST00000396354 PPP6R1Q9UPN7 881 aa14.43□□□□□ -0.1
NDE1-201ENST00000396354 FOXD1Q16676 465 aa14.42□□□□□ -0.1
NDE1-201ENST00000396354 CSRNP3Q8WYN3 585 aa14.41□□□□□ -0.1
NDE1-201ENST00000396354 CEP162Q5TB80 1403 aa14.4□□□□□ -0.1
NDE1-201ENST00000396354 TOP2BQ02880 1626 aa14.35□□□□□ -0.11
NDE1-201ENST00000396354 EEA1Q15075 1411 aa14.35□□□□□ -0.11
NDE1-201ENST00000396354 TNIKQ9UKE5 1360 aa14.34□□□□□ -0.11
NDE1-201ENST00000396354 KCNA4P22459 653 aa14.33□□□□□ -0.12
NDE1-201ENST00000396354 ZEB1P37275 1124 aaPredicted RBP14.32□□□□□ -0.12
NDE1-201ENST00000396354 BIVM-ERCC5R4GMW8 1640 aa14.32□□□□□ -0.12
NDE1-201ENST00000396354 CUX1P39880 1505 aa14.32□□□□□ -0.12
NDE1-201ENST00000396354 GOLGA3Q08378 1498 aa14.31□□□□□ -0.12
NDE1-201ENST00000396354 UBTFP17480 764 aaKnown RBP14.3□□□□□ -0.12
NDE1-201ENST00000396354 SCAF1Q9H7N4 1312 aaKnown RBP14.29□□□□□ -0.12
NDE1-201ENST00000396354 CFTRP13569 1480 aa14.29□□□□□ -0.12
NDE1-201ENST00000396354 RAPGEF2Q9Y4G8 1499 aa14.29□□□□□ -0.12
NDE1-201ENST00000396354 KIF21BO75037 1637 aa14.28□□□□□ -0.12
NDE1-201ENST00000396354 NESP48681 1621 aa14.25□□□□□ -0.13
NDE1-201ENST00000396354 CEP164Q9UPV0 1460 aa14.24□□□□□ -0.13
NDE1-201ENST00000396354 YTHDC1Q96MU7 727 aaKnown RBP14.24□□□□□ -0.13
NDE1-201ENST00000396354 CADPSQ9ULU8 1353 aa14.22□□□□□ -0.13
NDE1-201ENST00000396354 PRDM2Q13029 1718 aa14.19□□□□□ -0.14
NDE1-201ENST00000396354 HNRNPUL2Q1KMD3 747 aaKnown RBP14.17□□□□□ -0.14
NDE1-201ENST00000396354 CLIP1P30622 1438 aa14.15□□□□□ -0.14
NDE1-201ENST00000396354 PRXQ9BXM0 1461 aa14.14□□□□□ -0.15
NDE1-201ENST00000396354 NEUROD1Q13562 356 aa14.11□□□□□ -0.15
NDE1-201ENST00000396354 DIEXFQ68CQ4 756 aaKnown RBP14.11□□□□□ -0.15
NDE1-201ENST00000396354 LAMC3Q9Y6N6 1575 aa14.11□□□□□ -0.15
NDE1-201ENST00000396354 FANCD2Q9BXW9 1451 aa14.09□□□□□ -0.15
NDE1-201ENST00000396354 ERICH3Q5RHP9 1530 aa14.07□□□□□ -0.16
NDE1-201ENST00000396354 VPS8Q8N3P4 1428 aa14.06□□□□□ -0.16
NDE1-201ENST00000396354 FGD5Q6ZNL6 1462 aa14.06□□□□□ -0.16
NDE1-201ENST00000396354 KIF27Q86VH2 1401 aa14.05□□□□□ -0.16
NDE1-201ENST00000396354 GTF3C3Q9Y5Q9 886 aa14.05□□□□□ -0.16
NDE1-201ENST00000396354 ARAP1Q96P48 1450 aa14.05□□□□□ -0.16
NDE1-201ENST00000396354 CUX2O14529 1486 aa14.04□□□□□ -0.16
NDE1-201ENST00000396354 KIF21AQ7Z4S6 1674 aa14.03□□□□□ -0.16
NDE1-201ENST00000396354 PDS5BQ9NTI5 1447 aa14.03□□□□□ -0.16
NDE1-201ENST00000396354 IGF1RP08069 1367 aa14□□□□□ -0.17
NDE1-201ENST00000396354 RAD54L2Q9Y4B4 1467 aa13.98□□□□□ -0.17
NDE1-201ENST00000396354 ACIN1Q9UKV3 1341 aaKnown RBP13.98□□□□□ -0.17
NDE1-201ENST00000396354 ERCC6Q03468 1493 aa13.95□□□□□ -0.18
NDE1-201ENST00000396354 ARHGAP35Q9NRY4 1499 aa13.95□□□□□ -0.18
NDE1-201ENST00000396354 TOPBP1Q92547 1522 aa13.94□□□□□ -0.18
NDE1-201ENST00000396354 URB2Q14146 1524 aaKnown RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms