RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 NISCHQ9Y2I1 1504 aa28.33■■■□□ 2.13
CIITA-202ENST00000381835 CCDC180Q9P1Z9 1646 aa24.78■■□□□ 1.56
CIITA-202ENST00000381835 ZCCHC6Q5VYS8 1495 aaKnown RBP23.75■■□□□ 1.39
CIITA-202ENST00000381835 ABCC9O60706 1549 aa23.69■■□□□ 1.38
CIITA-202ENST00000381835 DCAF8L2P0C7V8 631 aa23.59■■□□□ 1.37
CIITA-202ENST00000381835 DCAF1Q9Y4B6 1507 aa23.38■■□□□ 1.33
CIITA-202ENST00000381835 MYO15BQ96JP2 1530 aa23.17■■□□□ 1.3
CIITA-202ENST00000381835 NACADO15069 1562 aa23.13■■□□□ 1.29
CIITA-202ENST00000381835 SHROOM4Q9ULL8 1493 aa23.08■■□□□ 1.28
CIITA-202ENST00000381835 RB1CC1Q8TDY2 1594 aa23■■□□□ 1.27
CIITA-202ENST00000381835 SCRIBQ14160 1630 aa22.83■■□□□ 1.24
CIITA-202ENST00000381835 UNC13AQ9UPW8 1703 aa22.57■■□□□ 1.2
CIITA-202ENST00000381835 PABPN1Q86U42 306 aaKnown RBP eCLIP22.32■■□□□ 1.16
CIITA-202ENST00000381835 BICRAQ9NZM4 1560 aa22.3■■□□□ 1.16
CIITA-202ENST00000381835 SUPT5HO00267 1087 aaKnown RBP22.11■■□□□ 1.13
CIITA-202ENST00000381835 CECR2Q9BXF3 1484 aa22.07■■□□□ 1.12
CIITA-202ENST00000381835 RSF1Q96T23 1441 aaPredicted RBP21.91■■□□□ 1.1
CIITA-202ENST00000381835 MROH2BQ7Z745 1585 aa21.9■■□□□ 1.1
CIITA-202ENST00000381835 BAZ1AQ9NRL2 1556 aaPredicted RBP21.9■■□□□ 1.1
CIITA-202ENST00000381835 SMARCA4P51532 1647 aa21.83■■□□□ 1.09
CIITA-202ENST00000381835 WIZO95785 1651 aa21.74■■□□□ 1.07
CIITA-202ENST00000381835 EIF4G1Q04637 1599 aaKnown RBP21.66■■□□□ 1.06
CIITA-202ENST00000381835 PEG3Q9GZU2 1588 aa21.54■■□□□ 1.04
CIITA-202ENST00000381835 ATAD2BQ9ULI0 1458 aa21.52■■□□□ 1.04
CIITA-202ENST00000381835 SMARCA2P51531 1590 aa21.5■■□□□ 1.03
CIITA-202ENST00000381835 TOP2AP11388 1531 aaKnown RBP21.46■■□□□ 1.03
CIITA-202ENST00000381835 CC2D2AQ9P2K1 1620 aa21.41■■□□□ 1.02
CIITA-202ENST00000381835 BAZ1BQ9UIG0 1483 aaKnown RBP21.4■■□□□ 1.02
CIITA-202ENST00000381835 NCAPD3P42695 1498 aa21.35■■□□□ 1.01
CIITA-202ENST00000381835 HMGXB3Q12766 1538 aa21.3■■□□□ 1
CIITA-202ENST00000381835 CCDC88BA6NC98 1476 aa21.27■□□□□ 0.99
CIITA-202ENST00000381835 DNAJC5BQ9UF47 199 aa21.07■□□□□ 0.96
CIITA-202ENST00000381835 CHIC1Q5VXU3 224 aa21.01■□□□□ 0.95
CIITA-202ENST00000381835 CFTRP13569 1480 aa20.83■□□□□ 0.92
CIITA-202ENST00000381835 CADPSQ9ULU8 1353 aa20.81■□□□□ 0.92
CIITA-202ENST00000381835 ABCC8Q09428 1581 aa20.78■□□□□ 0.92
CIITA-202ENST00000381835 TRIM41Q8WV44 630 aa20.77■□□□□ 0.92
CIITA-202ENST00000381835 PRDM2Q13029 1718 aa20.73■□□□□ 0.91
CIITA-202ENST00000381835 NESP48681 1621 aa20.73■□□□□ 0.91
CIITA-202ENST00000381835 LAMC3Q9Y6N6 1575 aa20.67■□□□□ 0.9
CIITA-202ENST00000381835 WRNQ14191 1432 aaPredicted RBP eCLIP20.65■□□□□ 0.9
CIITA-202ENST00000381835 FANCD2Q9BXW9 1451 aa20.59■□□□□ 0.89
CIITA-202ENST00000381835 SYNJ1O43426 1573 aa20.57■□□□□ 0.88
CIITA-202ENST00000381835 PDS5BQ9NTI5 1447 aa20.53■□□□□ 0.88
CIITA-202ENST00000381835 TOP2BQ02880 1626 aa20.49■□□□□ 0.87
CIITA-202ENST00000381835 CUX1P39880 1505 aa20.49■□□□□ 0.87
CIITA-202ENST00000381835 CEP164Q9UPV0 1460 aa20.48■□□□□ 0.87
CIITA-202ENST00000381835 KIF21AQ7Z4S6 1674 aa20.47■□□□□ 0.87
CIITA-202ENST00000381835 BIVM-ERCC5R4GMW8 1640 aa20.46■□□□□ 0.87
CIITA-202ENST00000381835 FAM9AQ8IZU1 332 aaPredicted RBP20.43■□□□□ 0.86
CIITA-202ENST00000381835 DNMBPQ6XZF7 1577 aa20.35■□□□□ 0.85
CIITA-202ENST00000381835 TOPBP1Q92547 1522 aa20.34■□□□□ 0.85
CIITA-202ENST00000381835 SOGA1O94964 1423 aa20.34■□□□□ 0.85
CIITA-202ENST00000381835 URB2Q14146 1524 aaKnown RBP20.34■□□□□ 0.85
CIITA-202ENST00000381835 ERCC6Q03468 1493 aa20.33■□□□□ 0.85
CIITA-202ENST00000381835 FGD5Q6ZNL6 1462 aa20.31■□□□□ 0.84
CIITA-202ENST00000381835 RUSC2Q8N2Y8 1516 aa20.28■□□□□ 0.84
CIITA-202ENST00000381835 MRC2Q9UBG0 1479 aa20.26■□□□□ 0.83
CIITA-202ENST00000381835 LOC105371045A0A1W2PR82 267 aa20.24■□□□□ 0.83
CIITA-202ENST00000381835 POLA1P09884 1462 aaPredicted RBP20.23■□□□□ 0.83
CIITA-202ENST00000381835 EEA1Q15075 1411 aa20.21■□□□□ 0.83
CIITA-202ENST00000381835 EHMT2Q96KQ7 1210 aa20.2■□□□□ 0.82
CIITA-202ENST00000381835 RAD54L2Q9Y4B4 1467 aa20.19■□□□□ 0.82
CIITA-202ENST00000381835 CSRNP3Q8WYN3 585 aa20.17■□□□□ 0.82
CIITA-202ENST00000381835 WDR62O43379 1518 aa20.16■□□□□ 0.82
CIITA-202ENST00000381835 THOC2Q8NI27 1593 aaKnown RBP20.15■□□□□ 0.82
CIITA-202ENST00000381835 CUX2O14529 1486 aa20.15■□□□□ 0.82
CIITA-202ENST00000381835 KIF27Q86VH2 1401 aa20.14■□□□□ 0.81
CIITA-202ENST00000381835 ABCA10Q8WWZ4 1543 aa20.1■□□□□ 0.81
CIITA-202ENST00000381835 WDR97A6NE52 1622 aa20.05■□□□□ 0.8
CIITA-202ENST00000381835 TARBP1Q13395 1621 aaKnown RBP20.04■□□□□ 0.8
CIITA-202ENST00000381835 TDRD9Q8NDG6 1382 aaKnown RBP20.02■□□□□ 0.8
CIITA-202ENST00000381835 IFT140Q96RY7 1462 aa19.99■□□□□ 0.79
CIITA-202ENST00000381835 IGF1RP08069 1367 aa19.98■□□□□ 0.79
CIITA-202ENST00000381835 KIF21BO75037 1637 aa19.97■□□□□ 0.79
CIITA-202ENST00000381835 ABCA5Q8WWZ7 1642 aa19.95■□□□□ 0.78
CIITA-202ENST00000381835 GOLGA3Q08378 1498 aa19.95■□□□□ 0.78
CIITA-202ENST00000381835 GAPVD1Q14C86 1478 aa19.94■□□□□ 0.78
CIITA-202ENST00000381835 UBTFP17480 764 aaKnown RBP19.94■□□□□ 0.78
CIITA-202ENST00000381835 PRXQ9BXM0 1461 aa19.93■□□□□ 0.78
CIITA-202ENST00000381835 RAPGEF2Q9Y4G8 1499 aa19.93■□□□□ 0.78
CIITA-202ENST00000381835 AQRO60306 1485 aaKnown RBP eCLIP19.92■□□□□ 0.78
CIITA-202ENST00000381835 ZNF608Q9ULD9 1512 aaPredicted RBP19.92■□□□□ 0.78
CIITA-202ENST00000381835 CARMIL1Q5VZK9 1371 aa19.89■□□□□ 0.77
CIITA-202ENST00000381835 ERICH3Q5RHP9 1530 aa19.87■□□□□ 0.77
CIITA-202ENST00000381835 PBRM1Q86U86 1689 aa19.85■□□□□ 0.77
CIITA-202ENST00000381835 TNIKQ9UKE5 1360 aa19.84■□□□□ 0.77
CIITA-202ENST00000381835 EIF4G3O43432 1585 aaKnown RBP19.83■□□□□ 0.77
CIITA-202ENST00000381835 CUL7Q14999 1698 aa19.83■□□□□ 0.77
CIITA-202ENST00000381835 HRCP23327 699 aa19.81■□□□□ 0.76
CIITA-202ENST00000381835 GRIN2BQ13224 1484 aa19.81■□□□□ 0.76
CIITA-202ENST00000381835 CEP162Q5TB80 1403 aa19.74■□□□□ 0.75
CIITA-202ENST00000381835 RANGAP1P46060 587 aaPredicted RBP19.73■□□□□ 0.75
CIITA-202ENST00000381835 SNAPC4Q5SXM2 1469 aa19.71■□□□□ 0.75
CIITA-202ENST00000381835 ADAMTS12P58397 1594 aa19.71■□□□□ 0.75
CIITA-202ENST00000381835 FHAD1B1AJZ9 1412 aa19.71■□□□□ 0.74
CIITA-202ENST00000381835 MAGI1Q96QZ7 1491 aaPredicted RBP19.65■□□□□ 0.74
CIITA-202ENST00000381835 PCGF6Q9BYE7 350 aa19.64■□□□□ 0.74
CIITA-202ENST00000381835 CLIP1P30622 1438 aa19.64■□□□□ 0.73
CIITA-202ENST00000381835 FBLN2P98095 1184 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms