RNA–Protein interactions for RNA: ENST00000376061.8

PDPN-203, Transcript of podoplanin, humanhuman

TSL 1 (best) BASIC

Gene PDPN, Length 1,368 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-203ENST00000376061 AEBP2Q6ZN18 517 aaPredicted RBP24.79■■□□□ 1.56
PDPN-203ENST00000376061 NISCHQ9Y2I1 1504 aa24.4■■□□□ 1.5
PDPN-203ENST00000376061 CHIC1Q5VXU3 224 aa23.16■■□□□ 1.3
PDPN-203ENST00000376061 CCDC180Q9P1Z9 1646 aa21.48■■□□□ 1.03
PDPN-203ENST00000376061 SENP3Q9H4L4 574 aaPredicted RBP21.23■□□□□ 0.99
PDPN-203ENST00000376061 PHF23Q9BUL5 403 aaPredicted RBP20.89■□□□□ 0.93
PDPN-203ENST00000376061 ZCCHC6Q5VYS8 1495 aaKnown RBP20.48■□□□□ 0.87
PDPN-203ENST00000376061 ABCC9O60706 1549 aa20.38■□□□□ 0.85
PDPN-203ENST00000376061 DCAF1Q9Y4B6 1507 aa20.21■□□□□ 0.83
PDPN-203ENST00000376061 MYO15BQ96JP2 1530 aa20.05■□□□□ 0.8
PDPN-203ENST00000376061 DCAF8L2P0C7V8 631 aa20.02■□□□□ 0.8
PDPN-203ENST00000376061 NACADO15069 1562 aa19.99■□□□□ 0.79
PDPN-203ENST00000376061 RB1CC1Q8TDY2 1594 aa19.88■□□□□ 0.77
PDPN-203ENST00000376061 FOXD1Q16676 465 aa19.87■□□□□ 0.77
PDPN-203ENST00000376061 SCRIBQ14160 1630 aa19.66■□□□□ 0.74
PDPN-203ENST00000376061 SHROOM4Q9ULL8 1493 aa19.64■□□□□ 0.73
PDPN-203ENST00000376061 UNC13AQ9UPW8 1703 aa19.55■□□□□ 0.72
PDPN-203ENST00000376061 POTEDQ86YR6 584 aa19.37■□□□□ 0.69
PDPN-203ENST00000376061 BICRAQ9NZM4 1560 aa19.3■□□□□ 0.68
PDPN-203ENST00000376061 PABPN1Q86U42 306 aaKnown RBP eCLIP19.09■□□□□ 0.65
PDPN-203ENST00000376061 CECR2Q9BXF3 1484 aa18.94■□□□□ 0.62
PDPN-203ENST00000376061 BAZ1AQ9NRL2 1556 aaPredicted RBP18.87■□□□□ 0.61
PDPN-203ENST00000376061 SMARCA4P51532 1647 aa18.84■□□□□ 0.61
PDPN-203ENST00000376061 MROH2BQ7Z745 1585 aa18.83■□□□□ 0.61
PDPN-203ENST00000376061 MSH5O43196 834 aa18.81■□□□□ 0.6
PDPN-203ENST00000376061 RSF1Q96T23 1441 aaPredicted RBP18.8■□□□□ 0.6
PDPN-203ENST00000376061 SUPT5HO00267 1087 aaKnown RBP18.72■□□□□ 0.59
PDPN-203ENST00000376061 EIF4G1Q04637 1599 aaKnown RBP18.71■□□□□ 0.59
PDPN-203ENST00000376061 WIZO95785 1651 aa18.69■□□□□ 0.58
PDPN-203ENST00000376061 PEG3Q9GZU2 1588 aa18.64■□□□□ 0.57
PDPN-203ENST00000376061 SMARCA2P51531 1590 aa18.55■□□□□ 0.56
PDPN-203ENST00000376061 ATAD2BQ9ULI0 1458 aa18.53■□□□□ 0.56
PDPN-203ENST00000376061 TOP2AP11388 1531 aaKnown RBP18.51■□□□□ 0.55
PDPN-203ENST00000376061 CC2D2AQ9P2K1 1620 aa18.49■□□□□ 0.55
PDPN-203ENST00000376061 HMGXB3Q12766 1538 aa18.43■□□□□ 0.54
PDPN-203ENST00000376061 PIAS4Q8N2W9 510 aaPredicted RBP18.42■□□□□ 0.54
PDPN-203ENST00000376061 BAZ1BQ9UIG0 1483 aaKnown RBP18.42■□□□□ 0.54
PDPN-203ENST00000376061 NCAPD3P42695 1498 aa18.4■□□□□ 0.54
PDPN-203ENST00000376061 CCDC88BA6NC98 1476 aa18.25■□□□□ 0.51
PDPN-203ENST00000376061 PPP6R1Q9UPN7 881 aa18.14■□□□□ 0.49
PDPN-203ENST00000376061 PLPPR3Q6T4P5 718 aa18.1■□□□□ 0.49
PDPN-203ENST00000376061 DNAJC5BQ9UF47 199 aa18.1■□□□□ 0.49
PDPN-203ENST00000376061 ADRA2BP18089 450 aa18.05■□□□□ 0.48
PDPN-203ENST00000376061 PRDM2Q13029 1718 aa17.98■□□□□ 0.47
PDPN-203ENST00000376061 CFTRP13569 1480 aa17.94■□□□□ 0.46
PDPN-203ENST00000376061 CADPSQ9ULU8 1353 aa17.88■□□□□ 0.45
PDPN-203ENST00000376061 LAMC3Q9Y6N6 1575 aa17.87■□□□□ 0.45
PDPN-203ENST00000376061 NESP48681 1621 aa17.83■□□□□ 0.45
PDPN-203ENST00000376061 ABCC8Q09428 1581 aa17.82■□□□□ 0.44
PDPN-203ENST00000376061 FANCD2Q9BXW9 1451 aa17.73■□□□□ 0.43
PDPN-203ENST00000376061 KIF21AQ7Z4S6 1674 aa17.71■□□□□ 0.43
PDPN-203ENST00000376061 SYNJ1O43426 1573 aa17.71■□□□□ 0.43
PDPN-203ENST00000376061 WRNQ14191 1432 aaPredicted RBP eCLIP17.71■□□□□ 0.42
PDPN-203ENST00000376061 BIVM-ERCC5R4GMW8 1640 aa17.67■□□□□ 0.42
PDPN-203ENST00000376061 PDS5BQ9NTI5 1447 aa17.66■□□□□ 0.42
PDPN-203ENST00000376061 TOP2BQ02880 1626 aa17.65■□□□□ 0.42
PDPN-203ENST00000376061 CEP164Q9UPV0 1460 aa17.65■□□□□ 0.42
PDPN-203ENST00000376061 CUX1P39880 1505 aa17.64■□□□□ 0.42
PDPN-203ENST00000376061 TRIM41Q8WV44 630 aa17.64■□□□□ 0.41
PDPN-203ENST00000376061 DNMBPQ6XZF7 1577 aa17.57■□□□□ 0.4
PDPN-203ENST00000376061 URB2Q14146 1524 aaKnown RBP17.54■□□□□ 0.4
PDPN-203ENST00000376061 TOPBP1Q92547 1522 aa17.53■□□□□ 0.4
PDPN-203ENST00000376061 ERCC6Q03468 1493 aa17.5■□□□□ 0.39
PDPN-203ENST00000376061 MRC2Q9UBG0 1479 aa17.5■□□□□ 0.39
PDPN-203ENST00000376061 THOC2Q8NI27 1593 aaKnown RBP17.48■□□□□ 0.39
PDPN-203ENST00000376061 FGD5Q6ZNL6 1462 aa17.47■□□□□ 0.39
PDPN-203ENST00000376061 WDR62O43379 1518 aa17.45■□□□□ 0.38
PDPN-203ENST00000376061 POLA1P09884 1462 aaPredicted RBP17.42■□□□□ 0.38
PDPN-203ENST00000376061 SOGA1O94964 1423 aa17.39■□□□□ 0.37
PDPN-203ENST00000376061 WDR97A6NE52 1622 aa17.38■□□□□ 0.37
PDPN-203ENST00000376061 RUSC2Q8N2Y8 1516 aa17.34■□□□□ 0.37
PDPN-203ENST00000376061 EEA1Q15075 1411 aa17.34■□□□□ 0.37
PDPN-203ENST00000376061 TARBP1Q13395 1621 aaKnown RBP17.32■□□□□ 0.36
PDPN-203ENST00000376061 RAD54L2Q9Y4B4 1467 aa17.32■□□□□ 0.36
PDPN-203ENST00000376061 ABCA10Q8WWZ4 1543 aa17.31■□□□□ 0.36
PDPN-203ENST00000376061 CUX2O14529 1486 aa17.3■□□□□ 0.36
PDPN-203ENST00000376061 FAM9AQ8IZU1 332 aaPredicted RBP17.28■□□□□ 0.36
PDPN-203ENST00000376061 KIF27Q86VH2 1401 aa17.27■□□□□ 0.35
PDPN-203ENST00000376061 ABCA5Q8WWZ7 1642 aa17.26■□□□□ 0.35
PDPN-203ENST00000376061 IFT140Q96RY7 1462 aa17.23■□□□□ 0.35
PDPN-203ENST00000376061 KIF21BO75037 1637 aa17.19■□□□□ 0.34
PDPN-203ENST00000376061 CSRNP3Q8WYN3 585 aa17.17■□□□□ 0.34
PDPN-203ENST00000376061 PBRM1Q86U86 1689 aa17.17■□□□□ 0.34
PDPN-203ENST00000376061 EIF4G3O43432 1585 aaKnown RBP17.15■□□□□ 0.34
PDPN-203ENST00000376061 ZNF608Q9ULD9 1512 aaPredicted RBP17.14■□□□□ 0.33
PDPN-203ENST00000376061 GAPVD1Q14C86 1478 aa17.14■□□□□ 0.33
PDPN-203ENST00000376061 TDRD9Q8NDG6 1382 aaKnown RBP17.14■□□□□ 0.33
PDPN-203ENST00000376061 ERICH3Q5RHP9 1530 aa17.13■□□□□ 0.33
PDPN-203ENST00000376061 CUL7Q14999 1698 aa17.12■□□□□ 0.33
PDPN-203ENST00000376061 PRXQ9BXM0 1461 aa17.12■□□□□ 0.33
PDPN-203ENST00000376061 IGF1RP08069 1367 aa17.1■□□□□ 0.33
PDPN-203ENST00000376061 LOC105371045A0A1W2PR82 267 aa17.1■□□□□ 0.33
PDPN-203ENST00000376061 GOLGA3Q08378 1498 aa17.1■□□□□ 0.33
PDPN-203ENST00000376061 AQRO60306 1485 aaKnown RBP eCLIP17.08■□□□□ 0.32
PDPN-203ENST00000376061 RAPGEF2Q9Y4G8 1499 aa17.07■□□□□ 0.32
PDPN-203ENST00000376061 GRIN2BQ13224 1484 aa17.05■□□□□ 0.32
PDPN-203ENST00000376061 ADAMTS12P58397 1594 aa17.05■□□□□ 0.32
PDPN-203ENST00000376061 EHMT2Q96KQ7 1210 aa17.02■□□□□ 0.32
PDPN-203ENST00000376061 CARMIL1Q5VZK9 1371 aa17.02■□□□□ 0.31
PDPN-203ENST00000376061 SNAPC4Q5SXM2 1469 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms