RNA–Protein interactions for RNA: ENST00000373377.1

CSMD2-203, Transcript of CUB and Sushi multiple domains 2, humanhuman

TSL 2 BASIC

Gene CSMD2, Length 3,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD2-203ENST00000373377 NISCHQ9Y2I1 1504 aa20.05■□□□□ 0.8
CSMD2-203ENST00000373377 CCDC180Q9P1Z9 1646 aa17.44■□□□□ 0.38
CSMD2-203ENST00000373377 ZCCHC6Q5VYS8 1495 aaKnown RBP16.98■□□□□ 0.31
CSMD2-203ENST00000373377 SHROOM4Q9ULL8 1493 aa16.97■□□□□ 0.31
CSMD2-203ENST00000373377 SUPT5HO00267 1087 aaKnown RBP16.83■□□□□ 0.28
CSMD2-203ENST00000373377 DCAF1Q9Y4B6 1507 aa16.66■□□□□ 0.26
CSMD2-203ENST00000373377 DCAF8L2P0C7V8 631 aa16.39■□□□□ 0.21
CSMD2-203ENST00000373377 PCGF6Q9BYE7 350 aa16.32■□□□□ 0.2
CSMD2-203ENST00000373377 MYO15BQ96JP2 1530 aa16.32■□□□□ 0.2
CSMD2-203ENST00000373377 HRCP23327 699 aa16.25■□□□□ 0.19
CSMD2-203ENST00000373377 PPARGC1BQ86YN6 1023 aaKnown RBP16.21■□□□□ 0.19
CSMD2-203ENST00000373377 CHIC1Q5VXU3 224 aa16.17■□□□□ 0.18
CSMD2-203ENST00000373377 NACADO15069 1562 aa16.02■□□□□ 0.16
CSMD2-203ENST00000373377 ABCC9O60706 1549 aa16.02■□□□□ 0.16
CSMD2-203ENST00000373377 LOC105371045A0A1W2PR82 267 aa15.99■□□□□ 0.15
CSMD2-203ENST00000373377 SCRIBQ14160 1630 aa15.96■□□□□ 0.15
CSMD2-203ENST00000373377 EHMT2Q96KQ7 1210 aa15.8■□□□□ 0.12
CSMD2-203ENST00000373377 RB1CC1Q8TDY2 1594 aa15.77■□□□□ 0.11
CSMD2-203ENST00000373377 UNC13AQ9UPW8 1703 aa15.76■□□□□ 0.11
CSMD2-203ENST00000373377 FAM9AQ8IZU1 332 aaPredicted RBP15.66■□□□□ 0.1
CSMD2-203ENST00000373377 RSF1Q96T23 1441 aaPredicted RBP15.66■□□□□ 0.1
CSMD2-203ENST00000373377 TRIM26Q12899 539 aaPredicted RBP15.63■□□□□ 0.09
CSMD2-203ENST00000373377 CECR2Q9BXF3 1484 aa15.53■□□□□ 0.08
CSMD2-203ENST00000373377 MROH2BQ7Z745 1585 aa15.52■□□□□ 0.08
CSMD2-203ENST00000373377 BICRAQ9NZM4 1560 aa15.46■□□□□ 0.07
CSMD2-203ENST00000373377 WIZO95785 1651 aa15.46■□□□□ 0.07
CSMD2-203ENST00000373377 BAZ1AQ9NRL2 1556 aaPredicted RBP15.46■□□□□ 0.07
CSMD2-203ENST00000373377 TRIM41Q8WV44 630 aa15.45■□□□□ 0.06
CSMD2-203ENST00000373377 EIF4G1Q04637 1599 aaKnown RBP15.4■□□□□ 0.06
CSMD2-203ENST00000373377 SMARCA4P51532 1647 aa15.4■□□□□ 0.06
CSMD2-203ENST00000373377 ZEB1P37275 1124 aaPredicted RBP15.33■□□□□ 0.04
CSMD2-203ENST00000373377 TTBK1Q5TCY1 1321 aaPredicted RBP15.32■□□□□ 0.04
CSMD2-203ENST00000373377 SCAF1Q9H7N4 1312 aaKnown RBP15.32■□□□□ 0.04
CSMD2-203ENST00000373377 TOP2AP11388 1531 aaKnown RBP15.28■□□□□ 0.04
CSMD2-203ENST00000373377 PEG3Q9GZU2 1588 aa15.26■□□□□ 0.03
CSMD2-203ENST00000373377 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.23■□□□□ 0.03
CSMD2-203ENST00000373377 SMARCA2P51531 1590 aa15.18■□□□□ 0.02
CSMD2-203ENST00000373377 CCER1Q8TC90 406 aaPredicted RBP15.17■□□□□ 0.02
CSMD2-203ENST00000373377 PELP1Q8IZL8 1130 aaKnown RBP15.15■□□□□ 0.02
CSMD2-203ENST00000373377 CCDC88BA6NC98 1476 aa15.07■□□□□ 0
CSMD2-203ENST00000373377 NEUROD1Q13562 356 aa15.04■□□□□ -0
CSMD2-203ENST00000373377 GTF3C3Q9Y5Q9 886 aa14.98□□□□□ -0.01
CSMD2-203ENST00000373377 ACIN1Q9UKV3 1341 aaKnown RBP14.98□□□□□ -0.01
CSMD2-203ENST00000373377 DIEXFQ68CQ4 756 aaKnown RBP14.97□□□□□ -0.01
CSMD2-203ENST00000373377 YTHDC1Q96MU7 727 aaKnown RBP14.96□□□□□ -0.01
CSMD2-203ENST00000373377 ATAD2BQ9ULI0 1458 aa14.95□□□□□ -0.02
CSMD2-203ENST00000373377 PABPN1Q86U42 306 aaKnown RBP eCLIP14.95□□□□□ -0.02
CSMD2-203ENST00000373377 ABCC8Q09428 1581 aa14.9□□□□□ -0.02
CSMD2-203ENST00000373377 CENPBP07199 599 aaPredicted RBP14.89□□□□□ -0.03
CSMD2-203ENST00000373377 HMGXB3Q12766 1538 aa14.86□□□□□ -0.03
CSMD2-203ENST00000373377 BAZ1BQ9UIG0 1483 aaKnown RBP14.82□□□□□ -0.04
CSMD2-203ENST00000373377 UBTFP17480 764 aaKnown RBP14.79□□□□□ -0.04
CSMD2-203ENST00000373377 NCAPD3P42695 1498 aa14.76□□□□□ -0.05
CSMD2-203ENST00000373377 RANGAP1P46060 587 aaPredicted RBP14.76□□□□□ -0.05
CSMD2-203ENST00000373377 SYNJ1O43426 1573 aa14.75□□□□□ -0.05
CSMD2-203ENST00000373377 PRDM2Q13029 1718 aa14.74□□□□□ -0.05
CSMD2-203ENST00000373377 HNRNPUL2Q1KMD3 747 aaKnown RBP14.73□□□□□ -0.05
CSMD2-203ENST00000373377 BIVM-ERCC5R4GMW8 1640 aa14.7□□□□□ -0.06
CSMD2-203ENST00000373377 ZNF316A6NFI3 1004 aaPredicted RBP14.66□□□□□ -0.06
CSMD2-203ENST00000373377 TOP2BQ02880 1626 aa14.65□□□□□ -0.06
CSMD2-203ENST00000373377 WRNQ14191 1432 aaPredicted RBP eCLIP14.64□□□□□ -0.07
CSMD2-203ENST00000373377 SOGA1O94964 1423 aa14.63□□□□□ -0.07
CSMD2-203ENST00000373377 MIER1Q8N108 512 aa14.62□□□□□ -0.07
CSMD2-203ENST00000373377 EEA1Q15075 1411 aa14.62□□□□□ -0.07
CSMD2-203ENST00000373377 RUSC2Q8N2Y8 1516 aa14.6□□□□□ -0.07
CSMD2-203ENST00000373377 CEP162Q5TB80 1403 aa14.59□□□□□ -0.07
CSMD2-203ENST00000373377 KIF21BO75037 1637 aa14.59□□□□□ -0.07
CSMD2-203ENST00000373377 CFTRP13569 1480 aa14.55□□□□□ -0.08
CSMD2-203ENST00000373377 CC2D2AQ9P2K1 1620 aa14.54□□□□□ -0.08
CSMD2-203ENST00000373377 CSRNP3Q8WYN3 585 aa14.53□□□□□ -0.08
CSMD2-203ENST00000373377 CUX1P39880 1505 aa14.5□□□□□ -0.09
CSMD2-203ENST00000373377 APLP2Q06481 763 aa14.49□□□□□ -0.09
CSMD2-203ENST00000373377 TNIKQ9UKE5 1360 aa14.47□□□□□ -0.09
CSMD2-203ENST00000373377 GOLGA3Q08378 1498 aa14.45□□□□□ -0.1
CSMD2-203ENST00000373377 CEP164Q9UPV0 1460 aa14.41□□□□□ -0.1
CSMD2-203ENST00000373377 MYT1Q01538 1121 aa14.41□□□□□ -0.1
CSMD2-203ENST00000373377 ERICH3Q5RHP9 1530 aa14.38□□□□□ -0.11
CSMD2-203ENST00000373377 ITGAEP38570 1179 aa14.35□□□□□ -0.11
CSMD2-203ENST00000373377 PRXQ9BXM0 1461 aa14.34□□□□□ -0.11
CSMD2-203ENST00000373377 RAPGEF2Q9Y4G8 1499 aa14.33□□□□□ -0.12
CSMD2-203ENST00000373377 CADPSQ9ULU8 1353 aa14.32□□□□□ -0.12
CSMD2-203ENST00000373377 CLIP1P30622 1438 aa14.27□□□□□ -0.12
CSMD2-203ENST00000373377 WDR97A6NE52 1622 aa14.27□□□□□ -0.13
CSMD2-203ENST00000373377 BCANQ96GW7 911 aa14.26□□□□□ -0.13
CSMD2-203ENST00000373377 DNMBPQ6XZF7 1577 aa14.24□□□□□ -0.13
CSMD2-203ENST00000373377 LAMC3Q9Y6N6 1575 aa14.24□□□□□ -0.13
CSMD2-203ENST00000373377 SUPT16HQ9Y5B9 1047 aaKnown RBP14.22□□□□□ -0.13
CSMD2-203ENST00000373377 FGD5Q6ZNL6 1462 aa14.2□□□□□ -0.14
CSMD2-203ENST00000373377 FANCD2Q9BXW9 1451 aa14.2□□□□□ -0.14
CSMD2-203ENST00000373377 KIF27Q86VH2 1401 aa14.19□□□□□ -0.14
CSMD2-203ENST00000373377 ARAP1Q96P48 1450 aa14.17□□□□□ -0.14
CSMD2-203ENST00000373377 VPS8Q8N3P4 1428 aa14.17□□□□□ -0.14
CSMD2-203ENST00000373377 KCNH8Q96L42 1107 aa14.17□□□□□ -0.14
CSMD2-203ENST00000373377 NESP48681 1621 aa14.16□□□□□ -0.14
CSMD2-203ENST00000373377 TOPBP1Q92547 1522 aa14.15□□□□□ -0.14
CSMD2-203ENST00000373377 KANK4Q5T7N3 995 aaPredicted RBP14.14□□□□□ -0.15
CSMD2-203ENST00000373377 KIF21AQ7Z4S6 1674 aa14.14□□□□□ -0.15
CSMD2-203ENST00000373377 ABCA10Q8WWZ4 1543 aa14.13□□□□□ -0.15
CSMD2-203ENST00000373377 ABCA5Q8WWZ7 1642 aa14.1□□□□□ -0.15
CSMD2-203ENST00000373377 POLA1P09884 1462 aaPredicted RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms