RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 NISCHQ9Y2I1 1504 aa15.44■□□□□ 0.06
TRIM55-203ENST00000350034 CCDC180Q9P1Z9 1646 aa13.35□□□□□ -0.27
TRIM55-203ENST00000350034 DNAJC5BQ9UF47 199 aa13.16□□□□□ -0.3
TRIM55-203ENST00000350034 DNAJC5Q9H3Z4 198 aa13.14□□□□□ -0.31
TRIM55-203ENST00000350034 AEBP2Q6ZN18 517 aaPredicted RBP13.09□□□□□ -0.31
TRIM55-203ENST00000350034 ZCCHC6Q5VYS8 1495 aaKnown RBP13.01□□□□□ -0.33
TRIM55-203ENST00000350034 ABCC9O60706 1549 aa12.83□□□□□ -0.35
TRIM55-203ENST00000350034 DCAF1Q9Y4B6 1507 aa12.8□□□□□ -0.36
TRIM55-203ENST00000350034 SHROOM4Q9ULL8 1493 aa12.61□□□□□ -0.39
TRIM55-203ENST00000350034 MYO15BQ96JP2 1530 aa12.61□□□□□ -0.39
TRIM55-203ENST00000350034 DCAF8L2P0C7V8 631 aa12.6□□□□□ -0.39
TRIM55-203ENST00000350034 NACADO15069 1562 aa12.43□□□□□ -0.42
TRIM55-203ENST00000350034 SCRIBQ14160 1630 aa12.26□□□□□ -0.45
TRIM55-203ENST00000350034 RB1CC1Q8TDY2 1594 aa12.26□□□□□ -0.45
TRIM55-203ENST00000350034 SUPT5HO00267 1087 aaKnown RBP12.22□□□□□ -0.45
TRIM55-203ENST00000350034 RSF1Q96T23 1441 aaPredicted RBP12.05□□□□□ -0.48
TRIM55-203ENST00000350034 CHIC1Q5VXU3 224 aa12.01□□□□□ -0.49
TRIM55-203ENST00000350034 CECR2Q9BXF3 1484 aa11.99□□□□□ -0.49
TRIM55-203ENST00000350034 UNC13AQ9UPW8 1703 aa11.96□□□□□ -0.49
TRIM55-203ENST00000350034 TRIM41Q8WV44 630 aa11.93□□□□□ -0.5
TRIM55-203ENST00000350034 MROH2BQ7Z745 1585 aa11.92□□□□□ -0.5
TRIM55-203ENST00000350034 BICRAQ9NZM4 1560 aa11.92□□□□□ -0.5
TRIM55-203ENST00000350034 BAZ1AQ9NRL2 1556 aaPredicted RBP11.88□□□□□ -0.51
TRIM55-203ENST00000350034 PABPN1Q86U42 306 aaKnown RBP eCLIP11.81□□□□□ -0.52
TRIM55-203ENST00000350034 SMARCA4P51532 1647 aa11.8□□□□□ -0.52
TRIM55-203ENST00000350034 WIZO95785 1651 aa11.78□□□□□ -0.52
TRIM55-203ENST00000350034 CUX2O14529 1486 aa11.72□□□□□ -0.53
TRIM55-203ENST00000350034 TOP2AP11388 1531 aaKnown RBP11.71□□□□□ -0.53
TRIM55-203ENST00000350034 PEG3Q9GZU2 1588 aa11.7□□□□□ -0.54
TRIM55-203ENST00000350034 ATAD2BQ9ULI0 1458 aa11.62□□□□□ -0.55
TRIM55-203ENST00000350034 SMARCA2P51531 1590 aa11.6□□□□□ -0.55
TRIM55-203ENST00000350034 CCDC88BA6NC98 1476 aa11.6□□□□□ -0.55
TRIM55-203ENST00000350034 EIF4G1Q04637 1599 aaKnown RBP11.59□□□□□ -0.55
TRIM55-203ENST00000350034 CC2D2AQ9P2K1 1620 aa11.58□□□□□ -0.56
TRIM55-203ENST00000350034 NCAPD3P42695 1498 aa11.51□□□□□ -0.57
TRIM55-203ENST00000350034 BAZ1BQ9UIG0 1483 aaKnown RBP11.51□□□□□ -0.57
TRIM55-203ENST00000350034 ILDR1Q86SU0 546 aaPredicted RBP11.49□□□□□ -0.57
TRIM55-203ENST00000350034 HMGXB3Q12766 1538 aa11.47□□□□□ -0.57
TRIM55-203ENST00000350034 LOC105371045A0A1W2PR82 267 aa11.36□□□□□ -0.59
TRIM55-203ENST00000350034 ABCC8Q09428 1581 aa11.36□□□□□ -0.59
TRIM55-203ENST00000350034 WRNQ14191 1432 aaPredicted RBP eCLIP11.31□□□□□ -0.6
TRIM55-203ENST00000350034 CFTRP13569 1480 aa11.28□□□□□ -0.6
TRIM55-203ENST00000350034 FAM9AQ8IZU1 332 aaPredicted RBP11.26□□□□□ -0.61
TRIM55-203ENST00000350034 EEA1Q15075 1411 aa11.25□□□□□ -0.61
TRIM55-203ENST00000350034 SYNJ1O43426 1573 aa11.24□□□□□ -0.61
TRIM55-203ENST00000350034 SOGA1O94964 1423 aa11.21□□□□□ -0.61
TRIM55-203ENST00000350034 CADPSQ9ULU8 1353 aa11.21□□□□□ -0.61
TRIM55-203ENST00000350034 ERCC6Q03468 1493 aa11.2□□□□□ -0.62
TRIM55-203ENST00000350034 TOP2BQ02880 1626 aa11.18□□□□□ -0.62
TRIM55-203ENST00000350034 BIVM-ERCC5R4GMW8 1640 aa11.17□□□□□ -0.62
TRIM55-203ENST00000350034 RUSC2Q8N2Y8 1516 aa11.16□□□□□ -0.62
TRIM55-203ENST00000350034 CSRNP3Q8WYN3 585 aa11.16□□□□□ -0.62
TRIM55-203ENST00000350034 CUX1P39880 1505 aa11.14□□□□□ -0.63
TRIM55-203ENST00000350034 PRDM2Q13029 1718 aa11.12□□□□□ -0.63
TRIM55-203ENST00000350034 TNIKQ9UKE5 1360 aa11.1□□□□□ -0.63
TRIM55-203ENST00000350034 GOLGA3Q08378 1498 aa11.06□□□□□ -0.64
TRIM55-203ENST00000350034 FANCD2Q9BXW9 1451 aa11.06□□□□□ -0.64
TRIM55-203ENST00000350034 CEP164Q9UPV0 1460 aa11.06□□□□□ -0.64
TRIM55-203ENST00000350034 KIF21BO75037 1637 aa11.06□□□□□ -0.64
TRIM55-203ENST00000350034 EHMT2Q96KQ7 1210 aa11.04□□□□□ -0.64
TRIM55-203ENST00000350034 SENP3Q9H4L4 574 aaPredicted RBP11.04□□□□□ -0.64
TRIM55-203ENST00000350034 LAMC3Q9Y6N6 1575 aa11.03□□□□□ -0.64
TRIM55-203ENST00000350034 NESP48681 1621 aa11.02□□□□□ -0.64
TRIM55-203ENST00000350034 PRXQ9BXM0 1461 aa11.01□□□□□ -0.65
TRIM55-203ENST00000350034 CEP162Q5TB80 1403 aa11.01□□□□□ -0.65
TRIM55-203ENST00000350034 KIF27Q86VH2 1401 aa11.01□□□□□ -0.65
TRIM55-203ENST00000350034 FGD5Q6ZNL6 1462 aa10.98□□□□□ -0.65
TRIM55-203ENST00000350034 RAPGEF2Q9Y4G8 1499 aa10.98□□□□□ -0.65
TRIM55-203ENST00000350034 DNMBPQ6XZF7 1577 aa10.98□□□□□ -0.65
TRIM55-203ENST00000350034 ERICH3Q5RHP9 1530 aa10.97□□□□□ -0.65
TRIM55-203ENST00000350034 TOPBP1Q92547 1522 aa10.96□□□□□ -0.65
TRIM55-203ENST00000350034 PDS5BQ9NTI5 1447 aa10.96□□□□□ -0.65
TRIM55-203ENST00000350034 UBTFP17480 764 aaKnown RBP10.96□□□□□ -0.65
TRIM55-203ENST00000350034 TRIM26Q12899 539 aaPredicted RBP10.96□□□□□ -0.65
TRIM55-203ENST00000350034 PCGF6Q9BYE7 350 aa10.95□□□□□ -0.66
TRIM55-203ENST00000350034 RIMBP3CA6NJZ7 1639 aa10.94□□□□□ -0.66
TRIM55-203ENST00000350034 RIMBP3BA6NNM3 1639 aa10.94□□□□□ -0.66
TRIM55-203ENST00000350034 RIMBP3Q9UFD9 1639 aa10.94□□□□□ -0.66
TRIM55-203ENST00000350034 IGF1RP08069 1367 aa10.93□□□□□ -0.66
TRIM55-203ENST00000350034 THOC2Q8NI27 1593 aaKnown RBP10.93□□□□□ -0.66
TRIM55-203ENST00000350034 URB2Q14146 1524 aaKnown RBP10.93□□□□□ -0.66
TRIM55-203ENST00000350034 PHF23Q9BUL5 403 aaPredicted RBP10.92□□□□□ -0.66
TRIM55-203ENST00000350034 ABCA10Q8WWZ4 1543 aa10.92□□□□□ -0.66
TRIM55-203ENST00000350034 POLA1P09884 1462 aaPredicted RBP10.92□□□□□ -0.66
TRIM55-203ENST00000350034 TRHP20396 242 aaPredicted RBP10.91□□□□□ -0.66
TRIM55-203ENST00000350034 CLIP1P30622 1438 aa10.89□□□□□ -0.67
TRIM55-203ENST00000350034 RAD54L2Q9Y4B4 1467 aa10.87□□□□□ -0.67
TRIM55-203ENST00000350034 LMTK3Q96Q04 1460 aa10.87□□□□□ -0.67
TRIM55-203ENST00000350034 CARMIL1Q5VZK9 1371 aa10.85□□□□□ -0.67
TRIM55-203ENST00000350034 VPS8Q8N3P4 1428 aa10.84□□□□□ -0.67
TRIM55-203ENST00000350034 SOCS7O14512 581 aa10.83□□□□□ -0.68
TRIM55-203ENST00000350034 KIF21AQ7Z4S6 1674 aa10.82□□□□□ -0.68
TRIM55-203ENST00000350034 WDR97A6NE52 1622 aa10.82□□□□□ -0.68
TRIM55-203ENST00000350034 MRC2Q9UBG0 1479 aa10.81□□□□□ -0.68
TRIM55-203ENST00000350034 HRCP23327 699 aa10.81□□□□□ -0.68
TRIM55-203ENST00000350034 ABCA5Q8WWZ7 1642 aa10.79□□□□□ -0.68
TRIM55-203ENST00000350034 ARAP1Q96P48 1450 aa10.79□□□□□ -0.68
TRIM55-203ENST00000350034 OSCARQ8IYS5 282 aa10.78□□□□□ -0.68
TRIM55-203ENST00000350034 TARBP1Q13395 1621 aaKnown RBP10.77□□□□□ -0.68
TRIM55-203ENST00000350034 CUL7Q14999 1698 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms