RNA–Protein interactions for RNA: ENST00000319980.10

IFT88-201, Transcript of intraflagellar transport 88, humanhuman

TSL 1 (best) BASIC

Gene IFT88, Length 3,091 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-201ENST00000319980 NISCHQ9Y2I1 1504 aa16.34■□□□□ 0.21
IFT88-201ENST00000319980 CCDC180Q9P1Z9 1646 aa14.42□□□□□ -0.1
IFT88-201ENST00000319980 ABCC9O60706 1549 aa13.84□□□□□ -0.19
IFT88-201ENST00000319980 ZCCHC6Q5VYS8 1495 aaKnown RBP13.76□□□□□ -0.21
IFT88-201ENST00000319980 SHROOM4Q9ULL8 1493 aa13.73□□□□□ -0.21
IFT88-201ENST00000319980 DCAF8L2P0C7V8 631 aa13.69□□□□□ -0.22
IFT88-201ENST00000319980 MYO15BQ96JP2 1530 aa13.53□□□□□ -0.24
IFT88-201ENST00000319980 RB1CC1Q8TDY2 1594 aa13.51□□□□□ -0.25
IFT88-201ENST00000319980 NACADO15069 1562 aa13.51□□□□□ -0.25
IFT88-201ENST00000319980 DCAF1Q9Y4B6 1507 aa13.41□□□□□ -0.26
IFT88-201ENST00000319980 SUPT5HO00267 1087 aaKnown RBP13.37□□□□□ -0.27
IFT88-201ENST00000319980 UNC13AQ9UPW8 1703 aa13.27□□□□□ -0.29
IFT88-201ENST00000319980 BICRAQ9NZM4 1560 aa13.13□□□□□ -0.31
IFT88-201ENST00000319980 SCRIBQ14160 1630 aa13.06□□□□□ -0.32
IFT88-201ENST00000319980 CHIC1Q5VXU3 224 aa12.91□□□□□ -0.34
IFT88-201ENST00000319980 DNAJC5BQ9UF47 199 aa12.86□□□□□ -0.35
IFT88-201ENST00000319980 RSF1Q96T23 1441 aaPredicted RBP12.84□□□□□ -0.35
IFT88-201ENST00000319980 CECR2Q9BXF3 1484 aa12.76□□□□□ -0.37
IFT88-201ENST00000319980 PABPN1Q86U42 306 aaKnown RBP eCLIP12.75□□□□□ -0.37
IFT88-201ENST00000319980 EIF4G1Q04637 1599 aaKnown RBP12.73□□□□□ -0.37
IFT88-201ENST00000319980 CC2D2AQ9P2K1 1620 aa12.7□□□□□ -0.38
IFT88-201ENST00000319980 MROH2BQ7Z745 1585 aa12.68□□□□□ -0.38
IFT88-201ENST00000319980 BAZ1AQ9NRL2 1556 aaPredicted RBP12.57□□□□□ -0.4
IFT88-201ENST00000319980 WIZO95785 1651 aa12.56□□□□□ -0.4
IFT88-201ENST00000319980 TRIM41Q8WV44 630 aa12.49□□□□□ -0.41
IFT88-201ENST00000319980 SMARCA4P51532 1647 aa12.47□□□□□ -0.41
IFT88-201ENST00000319980 LOC105371045A0A1W2PR82 267 aa12.46□□□□□ -0.41
IFT88-201ENST00000319980 PEG3Q9GZU2 1588 aa12.43□□□□□ -0.42
IFT88-201ENST00000319980 NCAPD3P42695 1498 aa12.41□□□□□ -0.42
IFT88-201ENST00000319980 HMGXB3Q12766 1538 aa12.4□□□□□ -0.42
IFT88-201ENST00000319980 TOP2AP11388 1531 aaKnown RBP12.39□□□□□ -0.43
IFT88-201ENST00000319980 FAM9AQ8IZU1 332 aaPredicted RBP12.36□□□□□ -0.43
IFT88-201ENST00000319980 SMARCA2P51531 1590 aa12.36□□□□□ -0.43
IFT88-201ENST00000319980 CCDC88BA6NC98 1476 aa12.35□□□□□ -0.43
IFT88-201ENST00000319980 ATAD2BQ9ULI0 1458 aa12.3□□□□□ -0.44
IFT88-201ENST00000319980 EHMT2Q96KQ7 1210 aa12.25□□□□□ -0.45
IFT88-201ENST00000319980 AEBP2Q6ZN18 517 aaPredicted RBP12.24□□□□□ -0.45
IFT88-201ENST00000319980 BAZ1BQ9UIG0 1483 aaKnown RBP12.21□□□□□ -0.46
IFT88-201ENST00000319980 ABCC8Q09428 1581 aa12.2□□□□□ -0.46
IFT88-201ENST00000319980 CUX2O14529 1486 aa12.19□□□□□ -0.46
IFT88-201ENST00000319980 PCGF6Q9BYE7 350 aa12.18□□□□□ -0.46
IFT88-201ENST00000319980 LAMC3Q9Y6N6 1575 aa12.15□□□□□ -0.46
IFT88-201ENST00000319980 WRNQ14191 1432 aaPredicted RBP eCLIP12.08□□□□□ -0.48
IFT88-201ENST00000319980 THOC2Q8NI27 1593 aaKnown RBP12.07□□□□□ -0.48
IFT88-201ENST00000319980 SOGA1O94964 1423 aa12.06□□□□□ -0.48
IFT88-201ENST00000319980 TRIM26Q12899 539 aaPredicted RBP12.02□□□□□ -0.49
IFT88-201ENST00000319980 CSRNP3Q8WYN3 585 aa12.01□□□□□ -0.49
IFT88-201ENST00000319980 RUSC2Q8N2Y8 1516 aa12□□□□□ -0.49
IFT88-201ENST00000319980 PRDM2Q13029 1718 aa11.99□□□□□ -0.49
IFT88-201ENST00000319980 KIF21AQ7Z4S6 1674 aa11.98□□□□□ -0.49
IFT88-201ENST00000319980 SYNJ1O43426 1573 aa11.97□□□□□ -0.49
IFT88-201ENST00000319980 EEA1Q15075 1411 aa11.97□□□□□ -0.49
IFT88-201ENST00000319980 HRCP23327 699 aa11.97□□□□□ -0.49
IFT88-201ENST00000319980 ERCC6Q03468 1493 aa11.96□□□□□ -0.5
IFT88-201ENST00000319980 NESP48681 1621 aa11.95□□□□□ -0.5
IFT88-201ENST00000319980 SLC24A1O60721 1099 aa11.95□□□□□ -0.5
IFT88-201ENST00000319980 UBTFP17480 764 aaKnown RBP11.95□□□□□ -0.5
IFT88-201ENST00000319980 PDS5BQ9NTI5 1447 aa11.93□□□□□ -0.5
IFT88-201ENST00000319980 WDR62O43379 1518 aa11.93□□□□□ -0.5
IFT88-201ENST00000319980 CADPSQ9ULU8 1353 aa11.92□□□□□ -0.5
IFT88-201ENST00000319980 PPARGC1BQ86YN6 1023 aaKnown RBP11.91□□□□□ -0.5
IFT88-201ENST00000319980 CFTRP13569 1480 aa11.9□□□□□ -0.5
IFT88-201ENST00000319980 TNIKQ9UKE5 1360 aa11.89□□□□□ -0.51
IFT88-201ENST00000319980 CEP162Q5TB80 1403 aa11.88□□□□□ -0.51
IFT88-201ENST00000319980 MRC2Q9UBG0 1479 aa11.87□□□□□ -0.51
IFT88-201ENST00000319980 TOP2BQ02880 1626 aa11.86□□□□□ -0.51
IFT88-201ENST00000319980 GOLGA3Q08378 1498 aa11.86□□□□□ -0.51
IFT88-201ENST00000319980 DNAJC5Q9H3Z4 198 aa11.86□□□□□ -0.51
IFT88-201ENST00000319980 CEP164Q9UPV0 1460 aa11.83□□□□□ -0.52
IFT88-201ENST00000319980 CUX1P39880 1505 aa11.81□□□□□ -0.52
IFT88-201ENST00000319980 BIVM-ERCC5R4GMW8 1640 aa11.8□□□□□ -0.52
IFT88-201ENST00000319980 TTBK1Q5TCY1 1321 aaPredicted RBP11.78□□□□□ -0.52
IFT88-201ENST00000319980 RAPGEF2Q9Y4G8 1499 aa11.78□□□□□ -0.52
IFT88-201ENST00000319980 RANGAP1P46060 587 aaPredicted RBP11.77□□□□□ -0.53
IFT88-201ENST00000319980 KIF21BO75037 1637 aa11.77□□□□□ -0.53
IFT88-201ENST00000319980 FANCD2Q9BXW9 1451 aa11.76□□□□□ -0.53
IFT88-201ENST00000319980 KIF27Q86VH2 1401 aa11.74□□□□□ -0.53
IFT88-201ENST00000319980 CLIP1P30622 1438 aa11.73□□□□□ -0.53
IFT88-201ENST00000319980 PRXQ9BXM0 1461 aa11.7□□□□□ -0.54
IFT88-201ENST00000319980 URB2Q14146 1524 aaKnown RBP11.7□□□□□ -0.54
IFT88-201ENST00000319980 WDR97A6NE52 1622 aa11.68□□□□□ -0.54
IFT88-201ENST00000319980 FGD5Q6ZNL6 1462 aa11.66□□□□□ -0.54
IFT88-201ENST00000319980 ERICH3Q5RHP9 1530 aa11.65□□□□□ -0.54
IFT88-201ENST00000319980 DNMBPQ6XZF7 1577 aa11.64□□□□□ -0.55
IFT88-201ENST00000319980 IGF1RP08069 1367 aa11.64□□□□□ -0.55
IFT88-201ENST00000319980 ZEB1P37275 1124 aaPredicted RBP11.63□□□□□ -0.55
IFT88-201ENST00000319980 VPS8Q8N3P4 1428 aa11.63□□□□□ -0.55
IFT88-201ENST00000319980 APLP2Q06481 763 aa11.63□□□□□ -0.55
IFT88-201ENST00000319980 IFT140Q96RY7 1462 aa11.62□□□□□ -0.55
IFT88-201ENST00000319980 TOPBP1Q92547 1522 aa11.6□□□□□ -0.55
IFT88-201ENST00000319980 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.59□□□□□ -0.55
IFT88-201ENST00000319980 PHF23Q9BUL5 403 aaPredicted RBP11.59□□□□□ -0.55
IFT88-201ENST00000319980 TARBP1Q13395 1621 aaKnown RBP11.59□□□□□ -0.55
IFT88-201ENST00000319980 CARMIL1Q5VZK9 1371 aa11.59□□□□□ -0.55
IFT88-201ENST00000319980 RAD54L2Q9Y4B4 1467 aa11.58□□□□□ -0.56
IFT88-201ENST00000319980 POLA1P09884 1462 aaPredicted RBP11.57□□□□□ -0.56
IFT88-201ENST00000319980 CCER1Q8TC90 406 aaPredicted RBP11.56□□□□□ -0.56
IFT88-201ENST00000319980 ARAP1Q96P48 1450 aa11.54□□□□□ -0.56
IFT88-201ENST00000319980 ABCA10Q8WWZ4 1543 aa11.52□□□□□ -0.56
IFT88-201ENST00000319980 EIF4G3O43432 1585 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms