RNA–Protein interactions for RNA: ENST00000318974.13

PTPN6-201, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PTPN6, Length 2,245 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-201ENST00000318974 NISCHQ9Y2I1 1504 aa28.7■■■□□ 2.18
PTPN6-201ENST00000318974 CCDC180Q9P1Z9 1646 aa25.05■■□□□ 1.6
PTPN6-201ENST00000318974 ZCCHC6Q5VYS8 1495 aaKnown RBP24.08■■□□□ 1.45
PTPN6-201ENST00000318974 ABCC9O60706 1549 aa23.82■■□□□ 1.4
PTPN6-201ENST00000318974 DCAF8L2P0C7V8 631 aa23.76■■□□□ 1.39
PTPN6-201ENST00000318974 DCAF1Q9Y4B6 1507 aa23.73■■□□□ 1.39
PTPN6-201ENST00000318974 MYO15BQ96JP2 1530 aa23.51■■□□□ 1.35
PTPN6-201ENST00000318974 NACADO15069 1562 aa23.39■■□□□ 1.34
PTPN6-201ENST00000318974 SHROOM4Q9ULL8 1493 aa23.32■■□□□ 1.32
PTPN6-201ENST00000318974 RB1CC1Q8TDY2 1594 aa23.22■■□□□ 1.31
PTPN6-201ENST00000318974 SCRIBQ14160 1630 aa23.02■■□□□ 1.28
PTPN6-201ENST00000318974 UNC13AQ9UPW8 1703 aa22.66■■□□□ 1.22
PTPN6-201ENST00000318974 BICRAQ9NZM4 1560 aa22.49■■□□□ 1.19
PTPN6-201ENST00000318974 PABPN1Q86U42 306 aaKnown RBP eCLIP22.45■■□□□ 1.18
PTPN6-201ENST00000318974 SUPT5HO00267 1087 aaKnown RBP22.39■■□□□ 1.18
PTPN6-201ENST00000318974 CECR2Q9BXF3 1484 aa22.3■■□□□ 1.16
PTPN6-201ENST00000318974 RSF1Q96T23 1441 aaPredicted RBP22.22■■□□□ 1.15
PTPN6-201ENST00000318974 BAZ1AQ9NRL2 1556 aaPredicted RBP22.17■■□□□ 1.14
PTPN6-201ENST00000318974 MROH2BQ7Z745 1585 aa22.16■■□□□ 1.14
PTPN6-201ENST00000318974 SMARCA4P51532 1647 aa22.07■■□□□ 1.12
PTPN6-201ENST00000318974 WIZO95785 1651 aa21.94■■□□□ 1.1
PTPN6-201ENST00000318974 EIF4G1Q04637 1599 aaKnown RBP21.84■■□□□ 1.09
PTPN6-201ENST00000318974 PEG3Q9GZU2 1588 aa21.81■■□□□ 1.08
PTPN6-201ENST00000318974 ATAD2BQ9ULI0 1458 aa21.76■■□□□ 1.07
PTPN6-201ENST00000318974 TOP2AP11388 1531 aaKnown RBP21.75■■□□□ 1.07
PTPN6-201ENST00000318974 SMARCA2P51531 1590 aa21.74■■□□□ 1.07
PTPN6-201ENST00000318974 BAZ1BQ9UIG0 1483 aaKnown RBP21.63■■□□□ 1.05
PTPN6-201ENST00000318974 NCAPD3P42695 1498 aa21.6■■□□□ 1.05
PTPN6-201ENST00000318974 HMGXB3Q12766 1538 aa21.55■■□□□ 1.04
PTPN6-201ENST00000318974 CC2D2AQ9P2K1 1620 aa21.54■■□□□ 1.04
PTPN6-201ENST00000318974 CCDC88BA6NC98 1476 aa21.52■■□□□ 1.04
PTPN6-201ENST00000318974 CHIC1Q5VXU3 224 aa21.37■■□□□ 1.01
PTPN6-201ENST00000318974 DNAJC5BQ9UF47 199 aa21.11■□□□□ 0.97
PTPN6-201ENST00000318974 CFTRP13569 1480 aa21.09■□□□□ 0.97
PTPN6-201ENST00000318974 TRIM41Q8WV44 630 aa21.08■□□□□ 0.96
PTPN6-201ENST00000318974 CADPSQ9ULU8 1353 aa21.05■□□□□ 0.96
PTPN6-201ENST00000318974 ABCC8Q09428 1581 aa21.01■□□□□ 0.95
PTPN6-201ENST00000318974 WRNQ14191 1432 aaPredicted RBP eCLIP20.93■□□□□ 0.94
PTPN6-201ENST00000318974 PRDM2Q13029 1718 aa20.89■□□□□ 0.93
PTPN6-201ENST00000318974 LAMC3Q9Y6N6 1575 aa20.87■□□□□ 0.93
PTPN6-201ENST00000318974 NESP48681 1621 aa20.86■□□□□ 0.93
PTPN6-201ENST00000318974 SYNJ1O43426 1573 aa20.81■□□□□ 0.92
PTPN6-201ENST00000318974 FANCD2Q9BXW9 1451 aa20.8■□□□□ 0.92
PTPN6-201ENST00000318974 TOP2BQ02880 1626 aa20.75■□□□□ 0.91
PTPN6-201ENST00000318974 PDS5BQ9NTI5 1447 aa20.74■□□□□ 0.91
PTPN6-201ENST00000318974 CUX1P39880 1505 aa20.72■□□□□ 0.91
PTPN6-201ENST00000318974 BIVM-ERCC5R4GMW8 1640 aa20.72■□□□□ 0.91
PTPN6-201ENST00000318974 CEP164Q9UPV0 1460 aa20.69■□□□□ 0.9
PTPN6-201ENST00000318974 FAM9AQ8IZU1 332 aaPredicted RBP20.68■□□□□ 0.9
PTPN6-201ENST00000318974 SOGA1O94964 1423 aa20.62■□□□□ 0.89
PTPN6-201ENST00000318974 EEA1Q15075 1411 aa20.59■□□□□ 0.89
PTPN6-201ENST00000318974 DNMBPQ6XZF7 1577 aa20.58■□□□□ 0.89
PTPN6-201ENST00000318974 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.88
PTPN6-201ENST00000318974 TOPBP1Q92547 1522 aa20.56■□□□□ 0.88
PTPN6-201ENST00000318974 LOC105371045A0A1W2PR82 267 aa20.54■□□□□ 0.88
PTPN6-201ENST00000318974 URB2Q14146 1524 aaKnown RBP20.53■□□□□ 0.88
PTPN6-201ENST00000318974 RUSC2Q8N2Y8 1516 aa20.53■□□□□ 0.88
PTPN6-201ENST00000318974 FGD5Q6ZNL6 1462 aa20.53■□□□□ 0.88
PTPN6-201ENST00000318974 CSRNP3Q8WYN3 585 aa20.48■□□□□ 0.87
PTPN6-201ENST00000318974 MRC2Q9UBG0 1479 aa20.47■□□□□ 0.87
PTPN6-201ENST00000318974 ERCC6Q03468 1493 aa20.45■□□□□ 0.86
PTPN6-201ENST00000318974 POLA1P09884 1462 aaPredicted RBP20.45■□□□□ 0.86
PTPN6-201ENST00000318974 KIF27Q86VH2 1401 aa20.42■□□□□ 0.86
PTPN6-201ENST00000318974 CUX2O14529 1486 aa20.38■□□□□ 0.85
PTPN6-201ENST00000318974 RAD54L2Q9Y4B4 1467 aa20.38■□□□□ 0.85
PTPN6-201ENST00000318974 EHMT2Q96KQ7 1210 aa20.37■□□□□ 0.85
PTPN6-201ENST00000318974 WDR62O43379 1518 aa20.35■□□□□ 0.85
PTPN6-201ENST00000318974 ABCA10Q8WWZ4 1543 aa20.35■□□□□ 0.85
PTPN6-201ENST00000318974 THOC2Q8NI27 1593 aaKnown RBP20.29■□□□□ 0.84
PTPN6-201ENST00000318974 GOLGA3Q08378 1498 aa20.28■□□□□ 0.84
PTPN6-201ENST00000318974 KIF21BO75037 1637 aa20.28■□□□□ 0.84
PTPN6-201ENST00000318974 WDR97A6NE52 1622 aa20.25■□□□□ 0.83
PTPN6-201ENST00000318974 IGF1RP08069 1367 aa20.24■□□□□ 0.83
PTPN6-201ENST00000318974 PRXQ9BXM0 1461 aa20.24■□□□□ 0.83
PTPN6-201ENST00000318974 TARBP1Q13395 1621 aaKnown RBP20.23■□□□□ 0.83
PTPN6-201ENST00000318974 UBTFP17480 764 aaKnown RBP20.21■□□□□ 0.83
PTPN6-201ENST00000318974 IFT140Q96RY7 1462 aa20.2■□□□□ 0.82
PTPN6-201ENST00000318974 TDRD9Q8NDG6 1382 aaKnown RBP20.2■□□□□ 0.82
PTPN6-201ENST00000318974 TNIKQ9UKE5 1360 aa20.2■□□□□ 0.82
PTPN6-201ENST00000318974 RAPGEF2Q9Y4G8 1499 aa20.19■□□□□ 0.82
PTPN6-201ENST00000318974 ERICH3Q5RHP9 1530 aa20.18■□□□□ 0.82
PTPN6-201ENST00000318974 GAPVD1Q14C86 1478 aa20.17■□□□□ 0.82
PTPN6-201ENST00000318974 ABCA5Q8WWZ7 1642 aa20.17■□□□□ 0.82
PTPN6-201ENST00000318974 CARMIL1Q5VZK9 1371 aa20.15■□□□□ 0.82
PTPN6-201ENST00000318974 AQRO60306 1485 aaKnown RBP eCLIP20.09■□□□□ 0.81
PTPN6-201ENST00000318974 ZNF608Q9ULD9 1512 aaPredicted RBP20.07■□□□□ 0.8
PTPN6-201ENST00000318974 CUL7Q14999 1698 aa20.07■□□□□ 0.8
PTPN6-201ENST00000318974 CEP162Q5TB80 1403 aa20.06■□□□□ 0.8
PTPN6-201ENST00000318974 PCGF6Q9BYE7 350 aa20.05■□□□□ 0.8
PTPN6-201ENST00000318974 GRIN2BQ13224 1484 aa20.03■□□□□ 0.8
PTPN6-201ENST00000318974 PBRM1Q86U86 1689 aa20■□□□□ 0.79
PTPN6-201ENST00000318974 EIF4G3O43432 1585 aaKnown RBP19.99■□□□□ 0.79
PTPN6-201ENST00000318974 HRCP23327 699 aa19.98■□□□□ 0.79
PTPN6-201ENST00000318974 FHAD1B1AJZ9 1412 aa19.95■□□□□ 0.78
PTPN6-201ENST00000318974 CLIP1P30622 1438 aa19.94■□□□□ 0.78
PTPN6-201ENST00000318974 ADAMTS12P58397 1594 aa19.92■□□□□ 0.78
PTPN6-201ENST00000318974 SNAPC4Q5SXM2 1469 aa19.9■□□□□ 0.78
PTPN6-201ENST00000318974 RANGAP1P46060 587 aaPredicted RBP19.89■□□□□ 0.77
PTPN6-201ENST00000318974 TRIM26Q12899 539 aaPredicted RBP19.88■□□□□ 0.77
PTPN6-201ENST00000318974 MAGI1Q96QZ7 1491 aaPredicted RBP19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms