RNA–Protein interactions for RNA: ENST00000315554.12

CDC42-201, Transcript of cell division cycle 42, humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene CDC42, Length 1,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42-201ENST00000315554 AEBP2Q6ZN18 517 aaPredicted RBP22.6■■□□□ 1.21
CDC42-201ENST00000315554 CHIC1Q5VXU3 224 aa21.16■□□□□ 0.98
CDC42-201ENST00000315554 SENP3Q9H4L4 574 aaPredicted RBP19.45■□□□□ 0.7
CDC42-201ENST00000315554 PHF23Q9BUL5 403 aaPredicted RBP19.04■□□□□ 0.64
CDC42-201ENST00000315554 NISCHQ9Y2I1 1504 aa18.83■□□□□ 0.6
CDC42-201ENST00000315554 FOXD1Q16676 465 aa18.14■□□□□ 0.5
CDC42-201ENST00000315554 POTEDQ86YR6 584 aa17.95■□□□□ 0.46
CDC42-201ENST00000315554 MSH5O43196 834 aa17.31■□□□□ 0.36
CDC42-201ENST00000315554 PIAS4Q8N2W9 510 aaPredicted RBP16.78■□□□□ 0.28
CDC42-201ENST00000315554 CCDC180Q9P1Z9 1646 aa16.63■□□□□ 0.25
CDC42-201ENST00000315554 PPP6R1Q9UPN7 881 aa16.43■□□□□ 0.22
CDC42-201ENST00000315554 PLPPR3Q6T4P5 718 aa16.38■□□□□ 0.21
CDC42-201ENST00000315554 ADRA2BP18089 450 aa16.3■□□□□ 0.2
CDC42-201ENST00000315554 ABCC9O60706 1549 aa16.3■□□□□ 0.2
CDC42-201ENST00000315554 DCAF8L2P0C7V8 631 aa15.81■□□□□ 0.12
CDC42-201ENST00000315554 ZCCHC6Q5VYS8 1495 aaKnown RBP15.71■□□□□ 0.1
CDC42-201ENST00000315554 RB1CC1Q8TDY2 1594 aa15.63■□□□□ 0.09
CDC42-201ENST00000315554 NACADO15069 1562 aa15.62■□□□□ 0.09
CDC42-201ENST00000315554 MYO15BQ96JP2 1530 aa15.51■□□□□ 0.07
CDC42-201ENST00000315554 DCAF1Q9Y4B6 1507 aa15.51■□□□□ 0.07
CDC42-201ENST00000315554 DMRT2Q9Y5R5 561 aa15.33■□□□□ 0.04
CDC42-201ENST00000315554 SCRIBQ14160 1630 aa15.29■□□□□ 0.04
CDC42-201ENST00000315554 UNC13AQ9UPW8 1703 aa15.29■□□□□ 0.04
CDC42-201ENST00000315554 PABPN1Q86U42 306 aaKnown RBP eCLIP15.27■□□□□ 0.04
CDC42-201ENST00000315554 BICRAQ9NZM4 1560 aa15.18■□□□□ 0.02
CDC42-201ENST00000315554 CACNB1Q02641 598 aaPredicted RBP15.17■□□□□ 0.02
CDC42-201ENST00000315554 MAPK8IP2Q13387 824 aaPredicted RBP15.16■□□□□ 0.02
CDC42-201ENST00000315554 SHROOM4Q9ULL8 1493 aa15.09■□□□□ 0.01
CDC42-201ENST00000315554 SCAF1Q9H7N4 1312 aaKnown RBP15.04■□□□□ -0
CDC42-201ENST00000315554 DNAJC5BQ9UF47 199 aa14.87□□□□□ -0.03
CDC42-201ENST00000315554 EIF4G1Q04637 1599 aaKnown RBP14.77□□□□□ -0.04
CDC42-201ENST00000315554 CECR2Q9BXF3 1484 aa14.72□□□□□ -0.05
CDC42-201ENST00000315554 CC2D2AQ9P2K1 1620 aa14.7□□□□□ -0.06
CDC42-201ENST00000315554 RNF39Q9H2S5 420 aa14.69□□□□□ -0.06
CDC42-201ENST00000315554 SMARCA4P51532 1647 aa14.59□□□□□ -0.07
CDC42-201ENST00000315554 BAZ1AQ9NRL2 1556 aaPredicted RBP14.57□□□□□ -0.08
CDC42-201ENST00000315554 DCAF8L1A6NGE4 600 aa14.56□□□□□ -0.08
CDC42-201ENST00000315554 MROH2BQ7Z745 1585 aa14.56□□□□□ -0.08
CDC42-201ENST00000315554 HOXD11P31277 338 aaPredicted RBP14.53□□□□□ -0.08
CDC42-201ENST00000315554 ATAD2BQ9ULI0 1458 aa14.49□□□□□ -0.09
CDC42-201ENST00000315554 C1QBPQ07021 282 aaKnown RBP14.47□□□□□ -0.09
CDC42-201ENST00000315554 SMARCA2P51531 1590 aa14.44□□□□□ -0.1
CDC42-201ENST00000315554 NCAPD3P42695 1498 aa14.43□□□□□ -0.1
CDC42-201ENST00000315554 RSF1Q96T23 1441 aaPredicted RBP14.41□□□□□ -0.1
CDC42-201ENST00000315554 WIZO95785 1651 aa14.4□□□□□ -0.1
CDC42-201ENST00000315554 PEG3Q9GZU2 1588 aa14.39□□□□□ -0.11
CDC42-201ENST00000315554 BAZ1BQ9UIG0 1483 aaKnown RBP14.38□□□□□ -0.11
CDC42-201ENST00000315554 HMGXB3Q12766 1538 aa14.36□□□□□ -0.11
CDC42-201ENST00000315554 SUPT5HO00267 1087 aaKnown RBP14.24□□□□□ -0.13
CDC42-201ENST00000315554 PPP4R3CPQ6ZMV5 832 aa14.23□□□□□ -0.13
CDC42-201ENST00000315554 TOP2AP11388 1531 aaKnown RBP14.22□□□□□ -0.13
CDC42-201ENST00000315554 RNF216Q9NWF9 866 aaPredicted RBP14.22□□□□□ -0.13
CDC42-201ENST00000315554 CNKSR2Q8WXI2 1034 aa14.17□□□□□ -0.14
CDC42-201ENST00000315554 NESP48681 1621 aa14.14□□□□□ -0.15
CDC42-201ENST00000315554 CCDC88BA6NC98 1476 aa14.08□□□□□ -0.15
CDC42-201ENST00000315554 CADPSQ9ULU8 1353 aa14.04□□□□□ -0.16
CDC42-201ENST00000315554 LAMC3Q9Y6N6 1575 aa14.02□□□□□ -0.17
CDC42-201ENST00000315554 ERCC6Q03468 1493 aa14.01□□□□□ -0.17
CDC42-201ENST00000315554 CFTRP13569 1480 aa13.97□□□□□ -0.17
CDC42-201ENST00000315554 POTEHQ6S545 545 aa13.94□□□□□ -0.18
CDC42-201ENST00000315554 PDS5BQ9NTI5 1447 aa13.94□□□□□ -0.18
CDC42-201ENST00000315554 KIF21AQ7Z4S6 1674 aa13.93□□□□□ -0.18
CDC42-201ENST00000315554 FANCD2Q9BXW9 1451 aa13.9□□□□□ -0.18
CDC42-201ENST00000315554 CEP164Q9UPV0 1460 aa13.86□□□□□ -0.19
CDC42-201ENST00000315554 THOC2Q8NI27 1593 aaKnown RBP13.84□□□□□ -0.19
CDC42-201ENST00000315554 PRDM2Q13029 1718 aa13.83□□□□□ -0.2
CDC42-201ENST00000315554 MRC2Q9UBG0 1479 aa13.82□□□□□ -0.2
CDC42-201ENST00000315554 URB2Q14146 1524 aaKnown RBP13.76□□□□□ -0.21
CDC42-201ENST00000315554 CUX2O14529 1486 aa13.75□□□□□ -0.21
CDC42-201ENST00000315554 WDR62O43379 1518 aa13.75□□□□□ -0.21
CDC42-201ENST00000315554 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.74□□□□□ -0.219e-6■■■□□ 18.9
CDC42-201ENST00000315554 TOPBP1Q92547 1522 aa13.69□□□□□ -0.22
CDC42-201ENST00000315554 DNMBPQ6XZF7 1577 aa13.66□□□□□ -0.22
CDC42-201ENST00000315554 ABCC8Q09428 1581 aa13.65□□□□□ -0.23
CDC42-201ENST00000315554 CUX1P39880 1505 aa13.64□□□□□ -0.23
CDC42-201ENST00000315554 POLA1P09884 1462 aaPredicted RBP13.58□□□□□ -0.23
CDC42-201ENST00000315554 WRNQ14191 1432 aaPredicted RBP eCLIP13.58□□□□□ -0.24
CDC42-201ENST00000315554 FGD5Q6ZNL6 1462 aa13.58□□□□□ -0.24
CDC42-201ENST00000315554 RAD54L2Q9Y4B4 1467 aa13.56□□□□□ -0.24
CDC42-201ENST00000315554 SYNJ1O43426 1573 aa13.56□□□□□ -0.24
CDC42-201ENST00000315554 IFT140Q96RY7 1462 aa13.55□□□□□ -0.24
CDC42-201ENST00000315554 ZNF608Q9ULD9 1512 aaPredicted RBP13.54□□□□□ -0.24
CDC42-201ENST00000315554 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
CDC42-201ENST00000315554 SOGA1O94964 1423 aa13.53□□□□□ -0.24
CDC42-201ENST00000315554 TOP2BQ02880 1626 aa13.52□□□□□ -0.25
CDC42-201ENST00000315554 DSG3P32926 999 aa13.51□□□□□ -0.25
CDC42-201ENST00000315554 TARBP1Q13395 1621 aaKnown RBP13.51□□□□□ -0.25
CDC42-201ENST00000315554 BIVM-ERCC5R4GMW8 1640 aa13.5□□□□□ -0.25
CDC42-201ENST00000315554 TDRD9Q8NDG6 1382 aaKnown RBP13.48□□□□□ -0.25
CDC42-201ENST00000315554 AQRO60306 1485 aaKnown RBP eCLIP13.48□□□□□ -0.251e-6■■■■□ 23.9
CDC42-201ENST00000315554 EIF4G3O43432 1585 aaKnown RBP13.46□□□□□ -0.26
CDC42-201ENST00000315554 WDR97A6NE52 1622 aa13.42□□□□□ -0.26
CDC42-201ENST00000315554 ABCA10Q8WWZ4 1543 aa13.41□□□□□ -0.26
CDC42-201ENST00000315554 U3KPZ7 1027 aaPredicted RBP13.41□□□□□ -0.26
CDC42-201ENST00000315554 TRIM41Q8WV44 630 aa13.38□□□□□ -0.27
CDC42-201ENST00000315554 GAPVD1Q14C86 1478 aa13.37□□□□□ -0.27
CDC42-201ENST00000315554 CAPN15O75808 1086 aa13.36□□□□□ -0.27
CDC42-201ENST00000315554 SPINK5Q9NQ38 1064 aaPredicted RBP13.36□□□□□ -0.27
CDC42-201ENST00000315554 ABCA5Q8WWZ7 1642 aa13.35□□□□□ -0.27
CDC42-201ENST00000315554 SNAPC4Q5SXM2 1469 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms