RNA–Protein interactions for RNA: ENST00000309934.4

SEC22A-201, Transcript of SEC22 homolog A, vesicle trafficking protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC22A, Length 4,228 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22A-201ENST00000309934 NISCHQ9Y2I1 1504 aa12.49□□□□□ -0.41
SEC22A-201ENST00000309934 CCDC180Q9P1Z9 1646 aa10.94□□□□□ -0.66
SEC22A-201ENST00000309934 DCAF8L2P0C7V8 631 aa10.61□□□□□ -0.71
SEC22A-201ENST00000309934 ZCCHC6Q5VYS8 1495 aaKnown RBP10.47□□□□□ -0.73
SEC22A-201ENST00000309934 DCAF1Q9Y4B6 1507 aa10.44□□□□□ -0.74
SEC22A-201ENST00000309934 MYO15BQ96JP2 1530 aa10.33□□□□□ -0.76
SEC22A-201ENST00000309934 NACADO15069 1562 aa10.28□□□□□ -0.76
SEC22A-201ENST00000309934 ABCC9O60706 1549 aa10.23□□□□□ -0.77
SEC22A-201ENST00000309934 SHROOM4Q9ULL8 1493 aa10.23□□□□□ -0.77
SEC22A-201ENST00000309934 RB1CC1Q8TDY2 1594 aa10.2□□□□□ -0.78
SEC22A-201ENST00000309934 SUPT5HO00267 1087 aaKnown RBP10.06□□□□□ -0.8
SEC22A-201ENST00000309934 MYT1Q01538 1121 aa10.03□□□□□ -0.8
SEC22A-201ENST00000309934 PELP1Q8IZL8 1130 aaKnown RBP10.02□□□□□ -0.81
SEC22A-201ENST00000309934 SCRIBQ14160 1630 aa9.95□□□□□ -0.82
SEC22A-201ENST00000309934 BAZ1AQ9NRL2 1556 aaPredicted RBP9.79□□□□□ -0.84
SEC22A-201ENST00000309934 RSF1Q96T23 1441 aaPredicted RBP9.68□□□□□ -0.86
SEC22A-201ENST00000309934 PABPN1Q86U42 306 aaKnown RBP eCLIP9.66□□□□□ -0.86
SEC22A-201ENST00000309934 SMARCA2P51531 1590 aa9.63□□□□□ -0.87
SEC22A-201ENST00000309934 EIF4G1Q04637 1599 aaKnown RBP9.62□□□□□ -0.87
SEC22A-201ENST00000309934 TRIM41Q8WV44 630 aa9.61□□□□□ -0.87
SEC22A-201ENST00000309934 UNC13AQ9UPW8 1703 aa9.6□□□□□ -0.87
SEC22A-201ENST00000309934 SMARCA4P51532 1647 aa9.56□□□□□ -0.88
SEC22A-201ENST00000309934 BAZ1BQ9UIG0 1483 aaKnown RBP9.54□□□□□ -0.88
SEC22A-201ENST00000309934 TOP2AP11388 1531 aaKnown RBP9.54□□□□□ -0.88
SEC22A-201ENST00000309934 CHIC1Q5VXU3 224 aa9.53□□□□□ -0.88
SEC22A-201ENST00000309934 MROH2BQ7Z745 1585 aa9.52□□□□□ -0.89
SEC22A-201ENST00000309934 CECR2Q9BXF3 1484 aa9.51□□□□□ -0.89
SEC22A-201ENST00000309934 BICRAQ9NZM4 1560 aa9.45□□□□□ -0.9
SEC22A-201ENST00000309934 TTBK1Q5TCY1 1321 aaPredicted RBP9.44□□□□□ -0.9
SEC22A-201ENST00000309934 FAM9AQ8IZU1 332 aaPredicted RBP9.43□□□□□ -0.9
SEC22A-201ENST00000309934 EEA1Q15075 1411 aa9.43□□□□□ -0.9
SEC22A-201ENST00000309934 ATAD2BQ9ULI0 1458 aa9.43□□□□□ -0.9
SEC22A-201ENST00000309934 PEG3Q9GZU2 1588 aa9.42□□□□□ -0.9
SEC22A-201ENST00000309934 NCAPD3P42695 1498 aa9.41□□□□□ -0.9
SEC22A-201ENST00000309934 HMGXB3Q12766 1538 aa9.41□□□□□ -0.9
SEC22A-201ENST00000309934 WIZO95785 1651 aa9.39□□□□□ -0.91
SEC22A-201ENST00000309934 ERICH6Q7L0X2 663 aa9.38□□□□□ -0.91
SEC22A-201ENST00000309934 CCDC88BA6NC98 1476 aa9.35□□□□□ -0.91
SEC22A-201ENST00000309934 APLP2Q06481 763 aa9.34□□□□□ -0.91
SEC22A-201ENST00000309934 WRNQ14191 1432 aaPredicted RBP eCLIP9.3□□□□□ -0.92
SEC22A-201ENST00000309934 ABCC8Q09428 1581 aa9.27□□□□□ -0.93
SEC22A-201ENST00000309934 SLC24A1O60721 1099 aa9.26□□□□□ -0.93
SEC22A-201ENST00000309934 UBTFP17480 764 aaKnown RBP9.26□□□□□ -0.93
SEC22A-201ENST00000309934 PDS5BQ9NTI5 1447 aa9.24□□□□□ -0.93
SEC22A-201ENST00000309934 CADPSQ9ULU8 1353 aa9.24□□□□□ -0.93
SEC22A-201ENST00000309934 CSRNP3Q8WYN3 585 aa9.23□□□□□ -0.93
SEC22A-201ENST00000309934 CC2D2AQ9P2K1 1620 aa9.19□□□□□ -0.94
SEC22A-201ENST00000309934 KIF27Q86VH2 1401 aa9.19□□□□□ -0.94
SEC22A-201ENST00000309934 CFTRP13569 1480 aa9.17□□□□□ -0.94
SEC22A-201ENST00000309934 CEP164Q9UPV0 1460 aa9.17□□□□□ -0.94
SEC22A-201ENST00000309934 GOLGA3Q08378 1498 aa9.17□□□□□ -0.94
SEC22A-201ENST00000309934 LAMC3Q9Y6N6 1575 aa9.12□□□□□ -0.95
SEC22A-201ENST00000309934 ZEB1P37275 1124 aaPredicted RBP9.12□□□□□ -0.95
SEC22A-201ENST00000309934 TNIKQ9UKE5 1360 aa9.11□□□□□ -0.95
SEC22A-201ENST00000309934 TRIM26Q12899 539 aaPredicted RBP9.1□□□□□ -0.95
SEC22A-201ENST00000309934 PRDM2Q13029 1718 aa9.09□□□□□ -0.95
SEC22A-201ENST00000309934 FANCD2Q9BXW9 1451 aa9.09□□□□□ -0.95
SEC22A-201ENST00000309934 TOP2BQ02880 1626 aa9.07□□□□□ -0.96
SEC22A-201ENST00000309934 ERCC6Q03468 1493 aa9.06□□□□□ -0.96
SEC22A-201ENST00000309934 LOC105371045A0A1W2PR82 267 aa9.05□□□□□ -0.96
SEC22A-201ENST00000309934 EHMT2Q96KQ7 1210 aa9.04□□□□□ -0.96
SEC22A-201ENST00000309934 DNMBPQ6XZF7 1577 aa9.01□□□□□ -0.97
SEC22A-201ENST00000309934 CUX2O14529 1486 aa9.01□□□□□ -0.97
SEC22A-201ENST00000309934 BIVM-ERCC5R4GMW8 1640 aa9.01□□□□□ -0.97
SEC22A-201ENST00000309934 SOGA1O94964 1423 aa9□□□□□ -0.97
SEC22A-201ENST00000309934 KIF21BO75037 1637 aa9□□□□□ -0.97
SEC22A-201ENST00000309934 ERICH3Q5RHP9 1530 aa9□□□□□ -0.97
SEC22A-201ENST00000309934 CLIP1P30622 1438 aa8.99□□□□□ -0.97
SEC22A-201ENST00000309934 MRC2Q9UBG0 1479 aa8.98□□□□□ -0.97
SEC22A-201ENST00000309934 CEP162Q5TB80 1403 aa8.98□□□□□ -0.97
SEC22A-201ENST00000309934 CARMIL1Q5VZK9 1371 aa8.97□□□□□ -0.97
SEC22A-201ENST00000309934 ACIN1Q9UKV3 1341 aaKnown RBP8.96□□□□□ -0.97
SEC22A-201ENST00000309934 RAPGEF2Q9Y4G8 1499 aa8.96□□□□□ -0.98
SEC22A-201ENST00000309934 FHAD1B1AJZ9 1412 aa8.95□□□□□ -0.98
SEC22A-201ENST00000309934 SYNJ1O43426 1573 aa8.95□□□□□ -0.98
SEC22A-201ENST00000309934 FGD5Q6ZNL6 1462 aa8.95□□□□□ -0.98
SEC22A-201ENST00000309934 PRKCSHP14314 528 aaPredicted RBP8.95□□□□□ -0.98
SEC22A-201ENST00000309934 PCGF6Q9BYE7 350 aa8.94□□□□□ -0.98
SEC22A-201ENST00000309934 IFT140Q96RY7 1462 aa8.93□□□□□ -0.98
SEC22A-201ENST00000309934 CUX1P39880 1505 aa8.93□□□□□ -0.98
SEC22A-201ENST00000309934 TOPBP1Q92547 1522 aa8.93□□□□□ -0.98
SEC22A-201ENST00000309934 WDR97A6NE52 1622 aa8.92□□□□□ -0.98
SEC22A-201ENST00000309934 CDK11AQ9UQ88 783 aaPredicted RBP8.92□□□□□ -0.98
SEC22A-201ENST00000309934 ABCA10Q8WWZ4 1543 aa8.91□□□□□ -0.98
SEC22A-201ENST00000309934 CENPBP07199 599 aaPredicted RBP8.91□□□□□ -0.98
SEC22A-201ENST00000309934 RANGAP1P46060 587 aaPredicted RBP8.9□□□□□ -0.99
SEC22A-201ENST00000309934 ATP1B4Q9UN42 357 aaPredicted RBP8.9□□□□□ -0.99
SEC22A-201ENST00000309934 CUL7Q14999 1698 aa8.89□□□□□ -0.99
SEC22A-201ENST00000309934 VPS8Q8N3P4 1428 aa8.88□□□□□ -0.99
SEC22A-201ENST00000309934 GAPVD1Q14C86 1478 aa8.88□□□□□ -0.99
SEC22A-201ENST00000309934 CHMP7Q8WUX9 453 aaPredicted RBP8.87□□□□□ -0.99
SEC22A-201ENST00000309934 FMN1Q68DA7 1419 aa8.87□□□□□ -0.99
SEC22A-201ENST00000309934 PRXQ9BXM0 1461 aa8.87□□□□□ -0.99
SEC22A-201ENST00000309934 GRIN2BQ13224 1484 aa8.86□□□□□ -0.99
SEC22A-201ENST00000309934 POLA1P09884 1462 aaPredicted RBP8.86□□□□□ -0.99
SEC22A-201ENST00000309934 IGF1RP08069 1367 aa8.85□□□□□ -0.99
SEC22A-201ENST00000309934 EFCAB5A4FU69 1503 aa8.85□□□□□ -0.99
SEC22A-201ENST00000309934 CARMIL2Q6F5E8 1435 aa8.83□□□□□ -1
SEC22A-201ENST00000309934 BCL11AQ9H165 835 aa8.83□□□□□ -1
SEC22A-201ENST00000309934 NESP48681 1621 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms