RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 NISCHQ9Y2I1 1504 aa26.8■■□□□ 1.88
TRIM40-205ENST00000307859 ABCC9O60706 1549 aa23.78■■□□□ 1.4
TRIM40-205ENST00000307859 CCDC180Q9P1Z9 1646 aa23.42■■□□□ 1.34
TRIM40-205ENST00000307859 DNAJC5BQ9UF47 199 aa23■■□□□ 1.27
TRIM40-205ENST00000307859 ZCCHC6Q5VYS8 1495 aaKnown RBP22.56■■□□□ 1.2
TRIM40-205ENST00000307859 RB1CC1Q8TDY2 1594 aa22.37■■□□□ 1.17
TRIM40-205ENST00000307859 DCAF1Q9Y4B6 1507 aa22.21■■□□□ 1.15
TRIM40-205ENST00000307859 NACADO15069 1562 aa22.07■■□□□ 1.12
TRIM40-205ENST00000307859 PABPN1Q86U42 306 aaKnown RBP eCLIP22.01■■□□□ 1.11
TRIM40-205ENST00000307859 MYO15BQ96JP2 1530 aa21.9■■□□□ 1.1
TRIM40-205ENST00000307859 DCAF8L2P0C7V8 631 aa21.88■■□□□ 1.09
TRIM40-205ENST00000307859 SHROOM4Q9ULL8 1493 aa21.83■■□□□ 1.08
TRIM40-205ENST00000307859 DNAJC5Q9H3Z4 198 aa21.77■■□□□ 1.08
TRIM40-205ENST00000307859 UNC13AQ9UPW8 1703 aa21.72■■□□□ 1.07
TRIM40-205ENST00000307859 BICRAQ9NZM4 1560 aa21.71■■□□□ 1.07
TRIM40-205ENST00000307859 CECR2Q9BXF3 1484 aa21.55■■□□□ 1.04
TRIM40-205ENST00000307859 SCRIBQ14160 1630 aa21.46■■□□□ 1.03
TRIM40-205ENST00000307859 CC2D2AQ9P2K1 1620 aa21.45■■□□□ 1.03
TRIM40-205ENST00000307859 EIF4G1Q04637 1599 aaKnown RBP21.25■□□□□ 0.99
TRIM40-205ENST00000307859 SUPT5HO00267 1087 aaKnown RBP21.03■□□□□ 0.96
TRIM40-205ENST00000307859 CUX2O14529 1486 aa20.92■□□□□ 0.94
TRIM40-205ENST00000307859 RSF1Q96T23 1441 aaPredicted RBP20.8■□□□□ 0.92
TRIM40-205ENST00000307859 MROH2BQ7Z745 1585 aa20.7■□□□□ 0.9
TRIM40-205ENST00000307859 BAZ1AQ9NRL2 1556 aaPredicted RBP20.69■□□□□ 0.9
TRIM40-205ENST00000307859 SMARCA4P51532 1647 aa20.62■□□□□ 0.89
TRIM40-205ENST00000307859 ERCC6Q03468 1493 aa20.61■□□□□ 0.89
TRIM40-205ENST00000307859 WIZO95785 1651 aa20.58■□□□□ 0.89
TRIM40-205ENST00000307859 NCAPD3P42695 1498 aa20.4■□□□□ 0.86
TRIM40-205ENST00000307859 PEG3Q9GZU2 1588 aa20.38■□□□□ 0.85
TRIM40-205ENST00000307859 TRIM41Q8WV44 630 aa20.38■□□□□ 0.85
TRIM40-205ENST00000307859 TOP2AP11388 1531 aaKnown RBP20.37■□□□□ 0.85
TRIM40-205ENST00000307859 CHIC1Q5VXU3 224 aa20.25■□□□□ 0.83
TRIM40-205ENST00000307859 SMARCA2P51531 1590 aa20.21■□□□□ 0.83
TRIM40-205ENST00000307859 NESP48681 1621 aa20.19■□□□□ 0.82
TRIM40-205ENST00000307859 ATAD2BQ9ULI0 1458 aa20.18■□□□□ 0.82
TRIM40-205ENST00000307859 THOC2Q8NI27 1593 aaKnown RBP20.18■□□□□ 0.82
TRIM40-205ENST00000307859 HMGXB3Q12766 1538 aa20.15■□□□□ 0.82
TRIM40-205ENST00000307859 CCDC88BA6NC98 1476 aa20.1■□□□□ 0.81
TRIM40-205ENST00000307859 BAZ1BQ9UIG0 1483 aaKnown RBP20.07■□□□□ 0.8
TRIM40-205ENST00000307859 LAMC3Q9Y6N6 1575 aa20.01■□□□□ 0.79
TRIM40-205ENST00000307859 PDS5BQ9NTI5 1447 aa19.96■□□□□ 0.79
TRIM40-205ENST00000307859 KIF21AQ7Z4S6 1674 aa19.88■□□□□ 0.77
TRIM40-205ENST00000307859 OSCARQ8IYS5 282 aa19.82■□□□□ 0.76
TRIM40-205ENST00000307859 MRC2Q9UBG0 1479 aa19.8■□□□□ 0.76
TRIM40-205ENST00000307859 WDR62O43379 1518 aa19.77■□□□□ 0.76
TRIM40-205ENST00000307859 ABCC8Q09428 1581 aa19.75■□□□□ 0.75
TRIM40-205ENST00000307859 CADPSQ9ULU8 1353 aa19.72■□□□□ 0.75
TRIM40-205ENST00000307859 PRDM2Q13029 1718 aa19.68■□□□□ 0.74
TRIM40-205ENST00000307859 CFTRP13569 1480 aa19.58■□□□□ 0.73
TRIM40-205ENST00000307859 WRNQ14191 1432 aaPredicted RBP eCLIP19.57■□□□□ 0.72
TRIM40-205ENST00000307859 RIMBP3CA6NJZ7 1639 aa19.56■□□□□ 0.72
TRIM40-205ENST00000307859 RIMBP3BA6NNM3 1639 aa19.56■□□□□ 0.72
TRIM40-205ENST00000307859 RIMBP3Q9UFD9 1639 aa19.56■□□□□ 0.72
TRIM40-205ENST00000307859 CEP164Q9UPV0 1460 aa19.55■□□□□ 0.72
TRIM40-205ENST00000307859 SYNJ1O43426 1573 aa19.55■□□□□ 0.72
TRIM40-205ENST00000307859 BIVM-ERCC5R4GMW8 1640 aa19.5■□□□□ 0.71
TRIM40-205ENST00000307859 TOP2BQ02880 1626 aa19.47■□□□□ 0.71
TRIM40-205ENST00000307859 FANCD2Q9BXW9 1451 aa19.46■□□□□ 0.71
TRIM40-205ENST00000307859 ARHGEF11O15085 1522 aa19.46■□□□□ 0.71
TRIM40-205ENST00000307859 LOC105371045A0A1W2PR82 267 aa19.44■□□□□ 0.7
TRIM40-205ENST00000307859 AEBP2Q6ZN18 517 aaPredicted RBP19.39■□□□□ 0.69
TRIM40-205ENST00000307859 FAM9AQ8IZU1 332 aaPredicted RBP19.39■□□□□ 0.69
TRIM40-205ENST00000307859 EEA1Q15075 1411 aa19.38■□□□□ 0.69
TRIM40-205ENST00000307859 CUX1P39880 1505 aa19.36■□□□□ 0.69
TRIM40-205ENST00000307859 TRHP20396 242 aaPredicted RBP19.36■□□□□ 0.69
TRIM40-205ENST00000307859 SOGA1O94964 1423 aa19.35■□□□□ 0.69
TRIM40-205ENST00000307859 CYB5RLQ6IPT4 315 aa19.34■□□□□ 0.69
TRIM40-205ENST00000307859 URB2Q14146 1524 aaKnown RBP19.33■□□□□ 0.69
TRIM40-205ENST00000307859 RUSC2Q8N2Y8 1516 aa19.29■□□□□ 0.68
TRIM40-205ENST00000307859 IFT140Q96RY7 1462 aa19.23■□□□□ 0.67
TRIM40-205ENST00000307859 ARAP1Q96P48 1450 aa19.21■□□□□ 0.67
TRIM40-205ENST00000307859 KIF21BO75037 1637 aa19.2■□□□□ 0.66
TRIM40-205ENST00000307859 ZNF608Q9ULD9 1512 aaPredicted RBP19.19■□□□□ 0.66
TRIM40-205ENST00000307859 CSRNP3Q8WYN3 585 aa19.18■□□□□ 0.66
TRIM40-205ENST00000307859 DNMBPQ6XZF7 1577 aa19.16■□□□□ 0.66
TRIM40-205ENST00000307859 GOLGA3Q08378 1498 aa19.12■□□□□ 0.65
TRIM40-205ENST00000307859 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
TRIM40-205ENST00000307859 TOPBP1Q92547 1522 aa19.1■□□□□ 0.65
TRIM40-205ENST00000307859 EHMT2Q96KQ7 1210 aa19.07■□□□□ 0.64
TRIM40-205ENST00000307859 TNIKQ9UKE5 1360 aa19.06■□□□□ 0.64
TRIM40-205ENST00000307859 KIF27Q86VH2 1401 aa19.06■□□□□ 0.64
TRIM40-205ENST00000307859 EIF4G3O43432 1585 aaKnown RBP19.04■□□□□ 0.64
TRIM40-205ENST00000307859 ERICH3Q5RHP9 1530 aa19.02■□□□□ 0.64
TRIM40-205ENST00000307859 CHD1O14646 1710 aa19■□□□□ 0.63
TRIM40-205ENST00000307859 WDR97A6NE52 1622 aa19■□□□□ 0.63
TRIM40-205ENST00000307859 POLA1P09884 1462 aaPredicted RBP19■□□□□ 0.63
TRIM40-205ENST00000307859 PRXQ9BXM0 1461 aa19■□□□□ 0.63
TRIM40-205ENST00000307859 RAPGEF2Q9Y4G8 1499 aa18.98■□□□□ 0.63
TRIM40-205ENST00000307859 CEP162Q5TB80 1403 aa18.98■□□□□ 0.63
TRIM40-205ENST00000307859 ABCA10Q8WWZ4 1543 aa18.96■□□□□ 0.63
TRIM40-205ENST00000307859 FBLN2P98095 1184 aa18.93■□□□□ 0.62
TRIM40-205ENST00000307859 AQRO60306 1485 aaKnown RBP eCLIP18.92■□□□□ 0.62
TRIM40-205ENST00000307859 UBTFP17480 764 aaKnown RBP18.91■□□□□ 0.62
TRIM40-205ENST00000307859 RAD54L2Q9Y4B4 1467 aa18.9■□□□□ 0.62
TRIM40-205ENST00000307859 TARBP1Q13395 1621 aaKnown RBP18.87■□□□□ 0.61
TRIM40-205ENST00000307859 CLASP1Q7Z460 1538 aa18.86■□□□□ 0.61
TRIM40-205ENST00000307859 IGF1RP08069 1367 aa18.86■□□□□ 0.61
TRIM40-205ENST00000307859 ABCA5Q8WWZ7 1642 aa18.86■□□□□ 0.61
TRIM40-205ENST00000307859 CUL7Q14999 1698 aa18.83■□□□□ 0.6
TRIM40-205ENST00000307859 CLIP1P30622 1438 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms