RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 NISCHQ9Y2I1 1504 aa22.69■■□□□ 1.22
LSM3-201ENST00000306024 DCAF8L2P0C7V8 631 aa19.9■□□□□ 0.78
LSM3-201ENST00000306024 CCDC180Q9P1Z9 1646 aa19.54■□□□□ 0.72
LSM3-201ENST00000306024 ABCC9O60706 1549 aa19.23■□□□□ 0.67
LSM3-201ENST00000306024 SHROOM4Q9ULL8 1493 aa19.18■□□□□ 0.66
LSM3-201ENST00000306024 ZCCHC6Q5VYS8 1495 aaKnown RBP18.94■□□□□ 0.62
LSM3-201ENST00000306024 SUPT5HO00267 1087 aaKnown RBP18.59■□□□□ 0.57
LSM3-201ENST00000306024 DCAF1Q9Y4B6 1507 aa18.51■□□□□ 0.55
LSM3-201ENST00000306024 NACADO15069 1562 aa18.46■□□□□ 0.55
LSM3-201ENST00000306024 RB1CC1Q8TDY2 1594 aa18.42■□□□□ 0.54
LSM3-201ENST00000306024 SCRIBQ14160 1630 aa18.39■□□□□ 0.53
LSM3-201ENST00000306024 PABPN1Q86U42 306 aaKnown RBP eCLIP18.35■□□□□ 0.53
LSM3-201ENST00000306024 MYO15BQ96JP2 1530 aa18.28■□□□□ 0.52
LSM3-201ENST00000306024 PELP1Q8IZL8 1130 aaKnown RBP17.89■□□□□ 0.45
LSM3-201ENST00000306024 HRCP23327 699 aa17.8■□□□□ 0.44
LSM3-201ENST00000306024 CECR2Q9BXF3 1484 aa17.76■□□□□ 0.43
LSM3-201ENST00000306024 RSF1Q96T23 1441 aaPredicted RBP17.69■□□□□ 0.42
LSM3-201ENST00000306024 PCGF6Q9BYE7 350 aa17.63■□□□□ 0.41
LSM3-201ENST00000306024 BAZ1AQ9NRL2 1556 aaPredicted RBP17.59■□□□□ 0.41
LSM3-201ENST00000306024 UNC13AQ9UPW8 1703 aa17.58■□□□□ 0.41
LSM3-201ENST00000306024 MROH2BQ7Z745 1585 aa17.57■□□□□ 0.4
LSM3-201ENST00000306024 BICRAQ9NZM4 1560 aa17.56■□□□□ 0.4
LSM3-201ENST00000306024 PPARGC1BQ86YN6 1023 aaKnown RBP17.52■□□□□ 0.4
LSM3-201ENST00000306024 SMARCA4P51532 1647 aa17.4■□□□□ 0.38
LSM3-201ENST00000306024 TRIM41Q8WV44 630 aa17.38■□□□□ 0.37
LSM3-201ENST00000306024 WIZO95785 1651 aa17.37■□□□□ 0.37
LSM3-201ENST00000306024 MYT1Q01538 1121 aa17.36■□□□□ 0.37
LSM3-201ENST00000306024 CHIC1Q5VXU3 224 aa17.35■□□□□ 0.37
LSM3-201ENST00000306024 BAZ1BQ9UIG0 1483 aaKnown RBP17.35■□□□□ 0.37
LSM3-201ENST00000306024 FAM9AQ8IZU1 332 aaPredicted RBP17.28■□□□□ 0.36
LSM3-201ENST00000306024 ATAD2BQ9ULI0 1458 aa17.28■□□□□ 0.36
LSM3-201ENST00000306024 EIF4G1Q04637 1599 aaKnown RBP17.27■□□□□ 0.36
LSM3-201ENST00000306024 SMARCA2P51531 1590 aa17.27■□□□□ 0.35
LSM3-201ENST00000306024 EHMT2Q96KQ7 1210 aa17.23■□□□□ 0.35
LSM3-201ENST00000306024 TOP2AP11388 1531 aaKnown RBP17.18■□□□□ 0.34
LSM3-201ENST00000306024 CCDC88BA6NC98 1476 aa17.14■□□□□ 0.33
LSM3-201ENST00000306024 NCAPD3P42695 1498 aa17.08■□□□□ 0.32
LSM3-201ENST00000306024 CC2D2AQ9P2K1 1620 aa17.06■□□□□ 0.32
LSM3-201ENST00000306024 PEG3Q9GZU2 1588 aa16.95■□□□□ 0.3
LSM3-201ENST00000306024 DNAJC5BQ9UF47 199 aa16.95■□□□□ 0.3
LSM3-201ENST00000306024 SCAF1Q9H7N4 1312 aaKnown RBP16.95■□□□□ 0.3
LSM3-201ENST00000306024 HMGXB3Q12766 1538 aa16.92■□□□□ 0.3
LSM3-201ENST00000306024 ZEB1P37275 1124 aaPredicted RBP16.9■□□□□ 0.3
LSM3-201ENST00000306024 LOC105371045A0A1W2PR82 267 aa16.87■□□□□ 0.29
LSM3-201ENST00000306024 CADPSQ9ULU8 1353 aa16.85■□□□□ 0.29
LSM3-201ENST00000306024 WRNQ14191 1432 aaPredicted RBP eCLIP16.83■□□□□ 0.28
LSM3-201ENST00000306024 UBTFP17480 764 aaKnown RBP16.82■□□□□ 0.28
LSM3-201ENST00000306024 TRIM26Q12899 539 aaPredicted RBP16.8■□□□□ 0.28
LSM3-201ENST00000306024 ABCC8Q09428 1581 aa16.79■□□□□ 0.28
LSM3-201ENST00000306024 RANGAP1P46060 587 aaPredicted RBP16.77■□□□□ 0.28
LSM3-201ENST00000306024 CENPBP07199 599 aaPredicted RBP16.76■□□□□ 0.27
LSM3-201ENST00000306024 PDS5BQ9NTI5 1447 aa16.69■□□□□ 0.26
LSM3-201ENST00000306024 CFTRP13569 1480 aa16.69■□□□□ 0.26
LSM3-201ENST00000306024 CSRNP3Q8WYN3 585 aa16.69■□□□□ 0.26
LSM3-201ENST00000306024 NESP48681 1621 aa16.68■□□□□ 0.26
LSM3-201ENST00000306024 ERCC6Q03468 1493 aa16.66■□□□□ 0.26
LSM3-201ENST00000306024 FANCD2Q9BXW9 1451 aa16.65■□□□□ 0.26
LSM3-201ENST00000306024 GTF3C3Q9Y5Q9 886 aa16.62■□□□□ 0.25
LSM3-201ENST00000306024 ACIN1Q9UKV3 1341 aaKnown RBP16.6■□□□□ 0.25
LSM3-201ENST00000306024 CEP164Q9UPV0 1460 aa16.59■□□□□ 0.25
LSM3-201ENST00000306024 SOGA1O94964 1423 aa16.56■□□□□ 0.24
LSM3-201ENST00000306024 NEUROD1Q13562 356 aa16.5■□□□□ 0.23
LSM3-201ENST00000306024 EEA1Q15075 1411 aa16.49■□□□□ 0.23
LSM3-201ENST00000306024 KIF27Q86VH2 1401 aa16.48■□□□□ 0.23
LSM3-201ENST00000306024 LAMC3Q9Y6N6 1575 aa16.48■□□□□ 0.23
LSM3-201ENST00000306024 APLP2Q06481 763 aa16.47■□□□□ 0.23
LSM3-201ENST00000306024 CUX2O14529 1486 aa16.46■□□□□ 0.23
LSM3-201ENST00000306024 SYNJ1O43426 1573 aa16.46■□□□□ 0.23
LSM3-201ENST00000306024 FBLN2P98095 1184 aa16.46■□□□□ 0.23
LSM3-201ENST00000306024 TTBK1Q5TCY1 1321 aaPredicted RBP16.45■□□□□ 0.22
LSM3-201ENST00000306024 YTHDC1Q96MU7 727 aaKnown RBP16.41■□□□□ 0.22
LSM3-201ENST00000306024 RUSC2Q8N2Y8 1516 aa16.41■□□□□ 0.22
LSM3-201ENST00000306024 ATP1B4Q9UN42 357 aaPredicted RBP16.41■□□□□ 0.22
LSM3-201ENST00000306024 FGD5Q6ZNL6 1462 aa16.41■□□□□ 0.22
LSM3-201ENST00000306024 CUX1P39880 1505 aa16.41■□□□□ 0.22
LSM3-201ENST00000306024 TDRD9Q8NDG6 1382 aaKnown RBP16.39■□□□□ 0.21
LSM3-201ENST00000306024 CCER1Q8TC90 406 aaPredicted RBP16.39■□□□□ 0.21
LSM3-201ENST00000306024 TOP2BQ02880 1626 aa16.35■□□□□ 0.21
LSM3-201ENST00000306024 RAD54L2Q9Y4B4 1467 aa16.35■□□□□ 0.21
LSM3-201ENST00000306024 TOPBP1Q92547 1522 aa16.35■□□□□ 0.21
LSM3-201ENST00000306024 DIEXFQ68CQ4 756 aaKnown RBP16.33■□□□□ 0.2
LSM3-201ENST00000306024 GOLGA3Q08378 1498 aa16.32■□□□□ 0.2
LSM3-201ENST00000306024 MRC2Q9UBG0 1479 aa16.32■□□□□ 0.2
LSM3-201ENST00000306024 CARMIL1Q5VZK9 1371 aa16.29■□□□□ 0.2
LSM3-201ENST00000306024 DNMBPQ6XZF7 1577 aa16.29■□□□□ 0.2
LSM3-201ENST00000306024 POLA1P09884 1462 aaPredicted RBP16.28■□□□□ 0.2
LSM3-201ENST00000306024 P3H3Q8IVL6 736 aa16.27■□□□□ 0.2
LSM3-201ENST00000306024 CHMP7Q8WUX9 453 aaPredicted RBP16.27■□□□□ 0.2
LSM3-201ENST00000306024 URB2Q14146 1524 aaKnown RBP16.27■□□□□ 0.2
LSM3-201ENST00000306024 TNIKQ9UKE5 1360 aa16.22■□□□□ 0.19
LSM3-201ENST00000306024 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.2■□□□□ 0.18
LSM3-201ENST00000306024 IGF1RP08069 1367 aa16.2■□□□□ 0.18
LSM3-201ENST00000306024 BIVM-ERCC5R4GMW8 1640 aa16.2■□□□□ 0.18
LSM3-201ENST00000306024 KIF21AQ7Z4S6 1674 aa16.2■□□□□ 0.18
LSM3-201ENST00000306024 PRDM2Q13029 1718 aa16.19■□□□□ 0.18
LSM3-201ENST00000306024 CEP162Q5TB80 1403 aa16.19■□□□□ 0.18
LSM3-201ENST00000306024 RAPGEF2Q9Y4G8 1499 aa16.18■□□□□ 0.18
LSM3-201ENST00000306024 GAPVD1Q14C86 1478 aa16.18■□□□□ 0.18
LSM3-201ENST00000306024 AQRO60306 1485 aaKnown RBP eCLIP16.18■□□□□ 0.182e-6■□□□□ 10.1
LSM3-201ENST00000306024 CLIP1P30622 1438 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms