RNA–Protein interactions for RNA: ENST00000297350.8

TNFRSF11B-201, Transcript of TNF receptor superfamily member 11b, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF11B, Length 2,402 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF11B-201ENST00000297350 NISCHQ9Y2I1 1504 aa21.26■□□□□ 0.99
TNFRSF11B-201ENST00000297350 CCDC180Q9P1Z9 1646 aa18.6■□□□□ 0.57
TNFRSF11B-201ENST00000297350 ZCCHC6Q5VYS8 1495 aaKnown RBP17.94■□□□□ 0.46
TNFRSF11B-201ENST00000297350 DCAF1Q9Y4B6 1507 aa17.69■□□□□ 0.42
TNFRSF11B-201ENST00000297350 SHROOM4Q9ULL8 1493 aa17.52■□□□□ 0.39
TNFRSF11B-201ENST00000297350 MYO15BQ96JP2 1530 aa17.43■□□□□ 0.38
TNFRSF11B-201ENST00000297350 NACADO15069 1562 aa17.2■□□□□ 0.34
TNFRSF11B-201ENST00000297350 SUPT5HO00267 1087 aaKnown RBP17.17■□□□□ 0.34
TNFRSF11B-201ENST00000297350 ABCC9O60706 1549 aa17.16■□□□□ 0.34
TNFRSF11B-201ENST00000297350 DCAF8L2P0C7V8 631 aa17.13■□□□□ 0.33
TNFRSF11B-201ENST00000297350 RB1CC1Q8TDY2 1594 aa16.99■□□□□ 0.31
TNFRSF11B-201ENST00000297350 SCRIBQ14160 1630 aa16.96■□□□□ 0.3
TNFRSF11B-201ENST00000297350 CHIC1Q5VXU3 224 aa16.83■□□□□ 0.28
TNFRSF11B-201ENST00000297350 UNC13AQ9UPW8 1703 aa16.71■□□□□ 0.27
TNFRSF11B-201ENST00000297350 RSF1Q96T23 1441 aaPredicted RBP16.61■□□□□ 0.25
TNFRSF11B-201ENST00000297350 BICRAQ9NZM4 1560 aa16.47■□□□□ 0.23
TNFRSF11B-201ENST00000297350 BAZ1AQ9NRL2 1556 aaPredicted RBP16.42■□□□□ 0.22
TNFRSF11B-201ENST00000297350 CECR2Q9BXF3 1484 aa16.41■□□□□ 0.22
TNFRSF11B-201ENST00000297350 MROH2BQ7Z745 1585 aa16.39■□□□□ 0.21
TNFRSF11B-201ENST00000297350 SMARCA4P51532 1647 aa16.34■□□□□ 0.21
TNFRSF11B-201ENST00000297350 WIZO95785 1651 aa16.28■□□□□ 0.2
TNFRSF11B-201ENST00000297350 HRCP23327 699 aa16.21■□□□□ 0.19
TNFRSF11B-201ENST00000297350 PEG3Q9GZU2 1588 aa16.2■□□□□ 0.18
TNFRSF11B-201ENST00000297350 TOP2AP11388 1531 aaKnown RBP16.19■□□□□ 0.18
TNFRSF11B-201ENST00000297350 TRIM41Q8WV44 630 aa16.18■□□□□ 0.18
TNFRSF11B-201ENST00000297350 EIF4G1Q04637 1599 aaKnown RBP16.13■□□□□ 0.17
TNFRSF11B-201ENST00000297350 LOC105371045A0A1W2PR82 267 aa16.11■□□□□ 0.17
TNFRSF11B-201ENST00000297350 PABPN1Q86U42 306 aaKnown RBP eCLIP16.1■□□□□ 0.17
TNFRSF11B-201ENST00000297350 PCGF6Q9BYE7 350 aa16.08■□□□□ 0.17
TNFRSF11B-201ENST00000297350 TRIM26Q12899 539 aaPredicted RBP16.03■□□□□ 0.16
TNFRSF11B-201ENST00000297350 SMARCA2P51531 1590 aa16.02■□□□□ 0.16
TNFRSF11B-201ENST00000297350 ATAD2BQ9ULI0 1458 aa15.97■□□□□ 0.15
TNFRSF11B-201ENST00000297350 CCDC88BA6NC98 1476 aa15.92■□□□□ 0.14
TNFRSF11B-201ENST00000297350 HMGXB3Q12766 1538 aa15.9■□□□□ 0.14
TNFRSF11B-201ENST00000297350 BAZ1BQ9UIG0 1483 aaKnown RBP15.88■□□□□ 0.13
TNFRSF11B-201ENST00000297350 EEA1Q15075 1411 aa15.83■□□□□ 0.13
TNFRSF11B-201ENST00000297350 NCAPD3P42695 1498 aa15.82■□□□□ 0.12
TNFRSF11B-201ENST00000297350 ZEB1P37275 1124 aaPredicted RBP15.8■□□□□ 0.12
TNFRSF11B-201ENST00000297350 FAM9AQ8IZU1 332 aaPredicted RBP15.79■□□□□ 0.12
TNFRSF11B-201ENST00000297350 ABCC8Q09428 1581 aa15.75■□□□□ 0.11
TNFRSF11B-201ENST00000297350 WRNQ14191 1432 aaPredicted RBP eCLIP15.69■□□□□ 0.1
TNFRSF11B-201ENST00000297350 TNIKQ9UKE5 1360 aa15.65■□□□□ 0.1
TNFRSF11B-201ENST00000297350 CC2D2AQ9P2K1 1620 aa15.64■□□□□ 0.09
TNFRSF11B-201ENST00000297350 PRDM2Q13029 1718 aa15.62■□□□□ 0.09
TNFRSF11B-201ENST00000297350 GOLGA3Q08378 1498 aa15.58■□□□□ 0.09
TNFRSF11B-201ENST00000297350 KIF21BO75037 1637 aa15.58■□□□□ 0.08
TNFRSF11B-201ENST00000297350 CEP162Q5TB80 1403 aa15.58■□□□□ 0.08
TNFRSF11B-201ENST00000297350 PPARGC1BQ86YN6 1023 aaKnown RBP15.57■□□□□ 0.08
TNFRSF11B-201ENST00000297350 SOGA1O94964 1423 aa15.57■□□□□ 0.08
TNFRSF11B-201ENST00000297350 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
TNFRSF11B-201ENST00000297350 SYNJ1O43426 1573 aa15.54■□□□□ 0.08
TNFRSF11B-201ENST00000297350 CEP164Q9UPV0 1460 aa15.53■□□□□ 0.08
TNFRSF11B-201ENST00000297350 CFTRP13569 1480 aa15.52■□□□□ 0.07
TNFRSF11B-201ENST00000297350 BIVM-ERCC5R4GMW8 1640 aa15.5■□□□□ 0.07
TNFRSF11B-201ENST00000297350 TOP2BQ02880 1626 aa15.48■□□□□ 0.07
TNFRSF11B-201ENST00000297350 EHMT2Q96KQ7 1210 aa15.46■□□□□ 0.07
TNFRSF11B-201ENST00000297350 RUSC2Q8N2Y8 1516 aa15.44■□□□□ 0.06
TNFRSF11B-201ENST00000297350 UBTFP17480 764 aaKnown RBP15.37■□□□□ 0.05
TNFRSF11B-201ENST00000297350 ERICH3Q5RHP9 1530 aa15.37■□□□□ 0.05
TNFRSF11B-201ENST00000297350 CADPSQ9ULU8 1353 aa15.37■□□□□ 0.05
TNFRSF11B-201ENST00000297350 CUX1P39880 1505 aa15.34■□□□□ 0.05
TNFRSF11B-201ENST00000297350 CLIP1P30622 1438 aa15.32■□□□□ 0.04
TNFRSF11B-201ENST00000297350 VPS8Q8N3P4 1428 aa15.3■□□□□ 0.04
TNFRSF11B-201ENST00000297350 LAMC3Q9Y6N6 1575 aa15.3■□□□□ 0.04
TNFRSF11B-201ENST00000297350 PRXQ9BXM0 1461 aa15.26■□□□□ 0.03
TNFRSF11B-201ENST00000297350 CCER1Q8TC90 406 aaPredicted RBP15.25■□□□□ 0.03
TNFRSF11B-201ENST00000297350 RAPGEF2Q9Y4G8 1499 aa15.25■□□□□ 0.03
TNFRSF11B-201ENST00000297350 FANCD2Q9BXW9 1451 aa15.22■□□□□ 0.03
TNFRSF11B-201ENST00000297350 KIF27Q86VH2 1401 aa15.2■□□□□ 0.02
TNFRSF11B-201ENST00000297350 DNMBPQ6XZF7 1577 aa15.19■□□□□ 0.02
TNFRSF11B-201ENST00000297350 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.17■□□□□ 0.02
TNFRSF11B-201ENST00000297350 APLP2Q06481 763 aa15.14■□□□□ 0.01
TNFRSF11B-201ENST00000297350 NESP48681 1621 aa15.14■□□□□ 0.01
TNFRSF11B-201ENST00000297350 FGD5Q6ZNL6 1462 aa15.12■□□□□ 0.01
TNFRSF11B-201ENST00000297350 TOPBP1Q92547 1522 aa15.1■□□□□ 0.01
TNFRSF11B-201ENST00000297350 PDS5BQ9NTI5 1447 aa15.08■□□□□ 0
TNFRSF11B-201ENST00000297350 KIF21AQ7Z4S6 1674 aa15.08■□□□□ 0
TNFRSF11B-201ENST00000297350 ARAP1Q96P48 1450 aa15.08■□□□□ 0
TNFRSF11B-201ENST00000297350 WDR97A6NE52 1622 aa15.08■□□□□ 0
TNFRSF11B-201ENST00000297350 ABCA10Q8WWZ4 1543 aa15.04■□□□□ -0
TNFRSF11B-201ENST00000297350 URB2Q14146 1524 aaKnown RBP15.03■□□□□ -0
TNFRSF11B-201ENST00000297350 POLA1P09884 1462 aaPredicted RBP15.03■□□□□ -0
TNFRSF11B-201ENST00000297350 CUX2O14529 1486 aa15.02□□□□□ -0.01
TNFRSF11B-201ENST00000297350 MAP3K1Q13233 1512 aa15.01□□□□□ -0.01
TNFRSF11B-201ENST00000297350 TTBK1Q5TCY1 1321 aaPredicted RBP15.01□□□□□ -0.01
TNFRSF11B-201ENST00000297350 CLSPNQ9HAW4 1339 aa15□□□□□ -0.01
TNFRSF11B-201ENST00000297350 CUL7Q14999 1698 aa14.96□□□□□ -0.01
TNFRSF11B-201ENST00000297350 ARHGAP35Q9NRY4 1499 aa14.96□□□□□ -0.01
TNFRSF11B-201ENST00000297350 RRBP1Q9P2E9 1410 aaKnown RBP14.96□□□□□ -0.01
TNFRSF11B-201ENST00000297350 DNAJC5BQ9UF47 199 aa14.96□□□□□ -0.01
TNFRSF11B-201ENST00000297350 ABCA5Q8WWZ7 1642 aa14.95□□□□□ -0.02
TNFRSF11B-201ENST00000297350 IGF1RP08069 1367 aa14.95□□□□□ -0.02
TNFRSF11B-201ENST00000297350 MRC2Q9UBG0 1479 aa14.93□□□□□ -0.02
TNFRSF11B-201ENST00000297350 DIEXFQ68CQ4 756 aaKnown RBP14.92□□□□□ -0.02
TNFRSF11B-201ENST00000297350 TARBP1Q13395 1621 aaKnown RBP14.91□□□□□ -0.02
TNFRSF11B-201ENST00000297350 RAD54L2Q9Y4B4 1467 aa14.91□□□□□ -0.02
TNFRSF11B-201ENST00000297350 ZNF316A6NFI3 1004 aaPredicted RBP14.9□□□□□ -0.02
TNFRSF11B-201ENST00000297350 CARMIL1Q5VZK9 1371 aa14.9□□□□□ -0.02
TNFRSF11B-201ENST00000297350 WDR62O43379 1518 aa14.89□□□□□ -0.03
TNFRSF11B-201ENST00000297350 HNRNPUL2Q1KMD3 747 aaKnown RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms