RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 NISCHQ9Y2I1 1504 aa20■□□□□ 0.79
PRDM9-201ENST00000296682 CCDC180Q9P1Z9 1646 aa17.52■□□□□ 0.4
PRDM9-201ENST00000296682 ZCCHC6Q5VYS8 1495 aaKnown RBP16.98■□□□□ 0.31
PRDM9-201ENST00000296682 DCAF8L2P0C7V8 631 aa16.95■□□□□ 0.3
PRDM9-201ENST00000296682 DCAF1Q9Y4B6 1507 aa16.84■□□□□ 0.29
PRDM9-201ENST00000296682 SHROOM4Q9ULL8 1493 aa16.81■□□□□ 0.28
PRDM9-201ENST00000296682 SUPT5HO00267 1087 aaKnown RBP16.51■□□□□ 0.23
PRDM9-201ENST00000296682 MYO15BQ96JP2 1530 aa16.51■□□□□ 0.23
PRDM9-201ENST00000296682 ABCC9O60706 1549 aa16.02■□□□□ 0.16
PRDM9-201ENST00000296682 NACADO15069 1562 aa16■□□□□ 0.15
PRDM9-201ENST00000296682 SCRIBQ14160 1630 aa15.69■□□□□ 0.1
PRDM9-201ENST00000296682 UNC13AQ9UPW8 1703 aa15.66■□□□□ 0.1
PRDM9-201ENST00000296682 RB1CC1Q8TDY2 1594 aa15.65■□□□□ 0.1
PRDM9-201ENST00000296682 EHMT2Q96KQ7 1210 aa15.6■□□□□ 0.09
PRDM9-201ENST00000296682 RSF1Q96T23 1441 aaPredicted RBP15.58■□□□□ 0.08
PRDM9-201ENST00000296682 CHIC1Q5VXU3 224 aa15.49■□□□□ 0.07
PRDM9-201ENST00000296682 EIF4G1Q04637 1599 aaKnown RBP15.48■□□□□ 0.07
PRDM9-201ENST00000296682 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
PRDM9-201ENST00000296682 FAM9AQ8IZU1 332 aaPredicted RBP15.42■□□□□ 0.06
PRDM9-201ENST00000296682 MROH2BQ7Z745 1585 aa15.38■□□□□ 0.05
PRDM9-201ENST00000296682 PEG3Q9GZU2 1588 aa15.36■□□□□ 0.05
PRDM9-201ENST00000296682 LOC105371045A0A1W2PR82 267 aa15.35■□□□□ 0.05
PRDM9-201ENST00000296682 BICRAQ9NZM4 1560 aa15.34■□□□□ 0.05
PRDM9-201ENST00000296682 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
PRDM9-201ENST00000296682 CECR2Q9BXF3 1484 aa15.32■□□□□ 0.04
PRDM9-201ENST00000296682 WIZO95785 1651 aa15.31■□□□□ 0.04
PRDM9-201ENST00000296682 TOP2AP11388 1531 aaKnown RBP15.25■□□□□ 0.03
PRDM9-201ENST00000296682 PCGF6Q9BYE7 350 aa15.22■□□□□ 0.03
PRDM9-201ENST00000296682 TRIM41Q8WV44 630 aa15.2■□□□□ 0.02
PRDM9-201ENST00000296682 PABPN1Q86U42 306 aaKnown RBP eCLIP15.16■□□□□ 0.02
PRDM9-201ENST00000296682 SMARCA2P51531 1590 aa15.13■□□□□ 0.01
PRDM9-201ENST00000296682 PPARGC1BQ86YN6 1023 aaKnown RBP14.99□□□□□ -0.01
PRDM9-201ENST00000296682 TTBK1Q5TCY1 1321 aaPredicted RBP14.97□□□□□ -0.01
PRDM9-201ENST00000296682 CCDC88BA6NC98 1476 aa14.95□□□□□ -0.02
PRDM9-201ENST00000296682 HMGXB3Q12766 1538 aa14.84□□□□□ -0.03
PRDM9-201ENST00000296682 PRDM2Q13029 1718 aa14.82□□□□□ -0.04
PRDM9-201ENST00000296682 ATAD2BQ9ULI0 1458 aa14.82□□□□□ -0.04
PRDM9-201ENST00000296682 RANGAP1P46060 587 aaPredicted RBP14.81□□□□□ -0.04
PRDM9-201ENST00000296682 BIVM-ERCC5R4GMW8 1640 aa14.75□□□□□ -0.05
PRDM9-201ENST00000296682 EEA1Q15075 1411 aa14.72□□□□□ -0.05
PRDM9-201ENST00000296682 NCAPD3P42695 1498 aa14.71□□□□□ -0.06
PRDM9-201ENST00000296682 ABCC8Q09428 1581 aa14.69□□□□□ -0.06
PRDM9-201ENST00000296682 HRCP23327 699 aa14.68□□□□□ -0.06
PRDM9-201ENST00000296682 UBTFP17480 764 aaKnown RBP14.67□□□□□ -0.06
PRDM9-201ENST00000296682 KIF21BO75037 1637 aa14.67□□□□□ -0.06
PRDM9-201ENST00000296682 TOP2BQ02880 1626 aa14.65□□□□□ -0.06
PRDM9-201ENST00000296682 WRNQ14191 1432 aaPredicted RBP eCLIP14.65□□□□□ -0.06
PRDM9-201ENST00000296682 SYNJ1O43426 1573 aa14.64□□□□□ -0.07
PRDM9-201ENST00000296682 TRIM26Q12899 539 aaPredicted RBP14.63□□□□□ -0.07
PRDM9-201ENST00000296682 BAZ1BQ9UIG0 1483 aaKnown RBP14.63□□□□□ -0.07
PRDM9-201ENST00000296682 TNIKQ9UKE5 1360 aa14.5□□□□□ -0.09
PRDM9-201ENST00000296682 CFTRP13569 1480 aa14.49□□□□□ -0.09
PRDM9-201ENST00000296682 ERICH3Q5RHP9 1530 aa14.46□□□□□ -0.09
PRDM9-201ENST00000296682 SOGA1O94964 1423 aa14.45□□□□□ -0.1
PRDM9-201ENST00000296682 RUSC2Q8N2Y8 1516 aa14.41□□□□□ -0.1
PRDM9-201ENST00000296682 GOLGA3Q08378 1498 aa14.41□□□□□ -0.1
PRDM9-201ENST00000296682 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.4□□□□□ -0.1
PRDM9-201ENST00000296682 CEP164Q9UPV0 1460 aa14.39□□□□□ -0.11
PRDM9-201ENST00000296682 CUX1P39880 1505 aa14.38□□□□□ -0.11
PRDM9-201ENST00000296682 CCER1Q8TC90 406 aaPredicted RBP14.38□□□□□ -0.11
PRDM9-201ENST00000296682 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
PRDM9-201ENST00000296682 PRXQ9BXM0 1461 aa14.35□□□□□ -0.11
PRDM9-201ENST00000296682 CEP162Q5TB80 1403 aa14.34□□□□□ -0.11
PRDM9-201ENST00000296682 APLP2Q06481 763 aa14.33□□□□□ -0.12
PRDM9-201ENST00000296682 CC2D2AQ9P2K1 1620 aa14.3□□□□□ -0.12
PRDM9-201ENST00000296682 WDR97A6NE52 1622 aa14.28□□□□□ -0.12
PRDM9-201ENST00000296682 HNRNPUL2Q1KMD3 747 aaKnown RBP14.28□□□□□ -0.12
PRDM9-201ENST00000296682 ATP1B4Q9UN42 357 aaPredicted RBP14.25□□□□□ -0.13
PRDM9-201ENST00000296682 RAPGEF2Q9Y4G8 1499 aa14.19□□□□□ -0.14
PRDM9-201ENST00000296682 LAMC3Q9Y6N6 1575 aa14.17□□□□□ -0.14
PRDM9-201ENST00000296682 ZEB1P37275 1124 aaPredicted RBP14.17□□□□□ -0.14
PRDM9-201ENST00000296682 CADPSQ9ULU8 1353 aa14.16□□□□□ -0.14
PRDM9-201ENST00000296682 DNMBPQ6XZF7 1577 aa14.16□□□□□ -0.14
PRDM9-201ENST00000296682 VPS8Q8N3P4 1428 aa14.16□□□□□ -0.14
PRDM9-201ENST00000296682 ITGAEP38570 1179 aa14.15□□□□□ -0.14
PRDM9-201ENST00000296682 MAP3K1Q13233 1512 aa14.14□□□□□ -0.15
PRDM9-201ENST00000296682 ARAP1Q96P48 1450 aa14.11□□□□□ -0.15
PRDM9-201ENST00000296682 CUL7Q14999 1698 aa14.1□□□□□ -0.15
PRDM9-201ENST00000296682 CLIP1P30622 1438 aa14.09□□□□□ -0.15
PRDM9-201ENST00000296682 KIF27Q86VH2 1401 aa14.09□□□□□ -0.15
PRDM9-201ENST00000296682 ABCA10Q8WWZ4 1543 aa14.08□□□□□ -0.16
PRDM9-201ENST00000296682 P3H3Q8IVL6 736 aa14.08□□□□□ -0.16
PRDM9-201ENST00000296682 ABCA5Q8WWZ7 1642 aa14.07□□□□□ -0.16
PRDM9-201ENST00000296682 CTTNBP2Q8WZ74 1663 aa14.05□□□□□ -0.16
PRDM9-201ENST00000296682 CFAP43Q8NDM7 1665 aa14.04□□□□□ -0.16
PRDM9-201ENST00000296682 CUX2O14529 1486 aa14.03□□□□□ -0.16
PRDM9-201ENST00000296682 FGD5Q6ZNL6 1462 aa14.02□□□□□ -0.17
PRDM9-201ENST00000296682 FANCD2Q9BXW9 1451 aa14□□□□□ -0.17
PRDM9-201ENST00000296682 TOPBP1Q92547 1522 aa14□□□□□ -0.17
PRDM9-201ENST00000296682 IGF1RP08069 1367 aa13.98□□□□□ -0.17
PRDM9-201ENST00000296682 ARHGAP35Q9NRY4 1499 aa13.98□□□□□ -0.17
PRDM9-201ENST00000296682 KIF21AQ7Z4S6 1674 aa13.98□□□□□ -0.17
PRDM9-201ENST00000296682 TARBP1Q13395 1621 aaKnown RBP13.97□□□□□ -0.17
PRDM9-201ENST00000296682 EFCAB5A4FU69 1503 aa13.95□□□□□ -0.18
PRDM9-201ENST00000296682 SAMD9Q5K651 1589 aa13.94□□□□□ -0.18
PRDM9-201ENST00000296682 RRBP1Q9P2E9 1410 aaKnown RBP13.94□□□□□ -0.18
PRDM9-201ENST00000296682 POLA1P09884 1462 aaPredicted RBP13.94□□□□□ -0.18
PRDM9-201ENST00000296682 AQRO60306 1485 aaKnown RBP eCLIP13.93□□□□□ -0.18
PRDM9-201ENST00000296682 URB2Q14146 1524 aaKnown RBP13.91□□□□□ -0.18
PRDM9-201ENST00000296682 TIAM1Q13009 1591 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms