RNA–Protein interactions for RNA: ENST00000281142.9

SCLT1-201, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SCLT1, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-201ENST00000281142 NISCHQ9Y2I1 1504 aa24.24■■□□□ 1.47
SCLT1-201ENST00000281142 CCDC180Q9P1Z9 1646 aa21.34■■□□□ 1.01
SCLT1-201ENST00000281142 ABCC9O60706 1549 aa20.52■□□□□ 0.87
SCLT1-201ENST00000281142 ZCCHC6Q5VYS8 1495 aaKnown RBP20.28■□□□□ 0.84
SCLT1-201ENST00000281142 DCAF8L2P0C7V8 631 aa20.1■□□□□ 0.81
SCLT1-201ENST00000281142 DCAF1Q9Y4B6 1507 aa20.03■□□□□ 0.8
SCLT1-201ENST00000281142 NACADO15069 1562 aa19.94■□□□□ 0.78
SCLT1-201ENST00000281142 MYO15BQ96JP2 1530 aa19.94■□□□□ 0.78
SCLT1-201ENST00000281142 RB1CC1Q8TDY2 1594 aa19.87■□□□□ 0.77
SCLT1-201ENST00000281142 SCRIBQ14160 1630 aa19.58■□□□□ 0.72
SCLT1-201ENST00000281142 UNC13AQ9UPW8 1703 aa19.55■□□□□ 0.72
SCLT1-201ENST00000281142 SHROOM4Q9ULL8 1493 aa19.5■□□□□ 0.71
SCLT1-201ENST00000281142 BICRAQ9NZM4 1560 aa19.32■□□□□ 0.68
SCLT1-201ENST00000281142 SUPT5HO00267 1087 aaKnown RBP19.29■□□□□ 0.68
SCLT1-201ENST00000281142 PABPN1Q86U42 306 aaKnown RBP eCLIP19.25■□□□□ 0.67
SCLT1-201ENST00000281142 HRCP23327 699 aa19.04■□□□□ 0.64
SCLT1-201ENST00000281142 CECR2Q9BXF3 1484 aa18.88■□□□□ 0.61
SCLT1-201ENST00000281142 PCGF6Q9BYE7 350 aa18.85■□□□□ 0.61
SCLT1-201ENST00000281142 CHIC1Q5VXU3 224 aa18.85■□□□□ 0.61
SCLT1-201ENST00000281142 PPARGC1BQ86YN6 1023 aaKnown RBP18.82■□□□□ 0.6
SCLT1-201ENST00000281142 EIF4G1Q04637 1599 aaKnown RBP18.75■□□□□ 0.59
SCLT1-201ENST00000281142 BAZ1AQ9NRL2 1556 aaPredicted RBP18.74■□□□□ 0.59
SCLT1-201ENST00000281142 SMARCA4P51532 1647 aa18.74■□□□□ 0.59
SCLT1-201ENST00000281142 MROH2BQ7Z745 1585 aa18.72■□□□□ 0.59
SCLT1-201ENST00000281142 RSF1Q96T23 1441 aaPredicted RBP18.64■□□□□ 0.57
SCLT1-201ENST00000281142 CC2D2AQ9P2K1 1620 aa18.58■□□□□ 0.57
SCLT1-201ENST00000281142 WIZO95785 1651 aa18.57■□□□□ 0.56
SCLT1-201ENST00000281142 PEG3Q9GZU2 1588 aa18.52■□□□□ 0.56
SCLT1-201ENST00000281142 ATAD2BQ9ULI0 1458 aa18.5■□□□□ 0.55
SCLT1-201ENST00000281142 SMARCA2P51531 1590 aa18.47■□□□□ 0.55
SCLT1-201ENST00000281142 LOC105371045A0A1W2PR82 267 aa18.47■□□□□ 0.55
SCLT1-201ENST00000281142 DNAJC5BQ9UF47 199 aa18.47■□□□□ 0.55
SCLT1-201ENST00000281142 NCAPD3P42695 1498 aa18.4■□□□□ 0.54
SCLT1-201ENST00000281142 BAZ1BQ9UIG0 1483 aaKnown RBP18.37■□□□□ 0.53
SCLT1-201ENST00000281142 HMGXB3Q12766 1538 aa18.36■□□□□ 0.53
SCLT1-201ENST00000281142 PELP1Q8IZL8 1130 aaKnown RBP18.34■□□□□ 0.53
SCLT1-201ENST00000281142 TOP2AP11388 1531 aaKnown RBP18.33■□□□□ 0.53
SCLT1-201ENST00000281142 TRIM26Q12899 539 aaPredicted RBP18.19■□□□□ 0.5
SCLT1-201ENST00000281142 CCDC88BA6NC98 1476 aa18.14■□□□□ 0.49
SCLT1-201ENST00000281142 SCAF1Q9H7N4 1312 aaKnown RBP17.95■□□□□ 0.46
SCLT1-201ENST00000281142 NESP48681 1621 aa17.91■□□□□ 0.46
SCLT1-201ENST00000281142 CADPSQ9ULU8 1353 aa17.89■□□□□ 0.45
SCLT1-201ENST00000281142 CFTRP13569 1480 aa17.89■□□□□ 0.45
SCLT1-201ENST00000281142 FAM9AQ8IZU1 332 aaPredicted RBP17.87■□□□□ 0.45
SCLT1-201ENST00000281142 EHMT2Q96KQ7 1210 aa17.87■□□□□ 0.45
SCLT1-201ENST00000281142 ZEB1P37275 1124 aaPredicted RBP17.87■□□□□ 0.45
SCLT1-201ENST00000281142 LAMC3Q9Y6N6 1575 aa17.86■□□□□ 0.45
SCLT1-201ENST00000281142 PRDM2Q13029 1718 aa17.84■□□□□ 0.45
SCLT1-201ENST00000281142 TRIM41Q8WV44 630 aa17.78■□□□□ 0.44
SCLT1-201ENST00000281142 KIF21AQ7Z4S6 1674 aa17.73■□□□□ 0.43
SCLT1-201ENST00000281142 FANCD2Q9BXW9 1451 aa17.71■□□□□ 0.42
SCLT1-201ENST00000281142 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
SCLT1-201ENST00000281142 ABCC8Q09428 1581 aa17.66■□□□□ 0.42
SCLT1-201ENST00000281142 MYT1Q01538 1121 aa17.65■□□□□ 0.42
SCLT1-201ENST00000281142 CEP164Q9UPV0 1460 aa17.63■□□□□ 0.41
SCLT1-201ENST00000281142 ERCC6Q03468 1493 aa17.61■□□□□ 0.41
SCLT1-201ENST00000281142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.57■□□□□ 0.4
SCLT1-201ENST00000281142 NEUROD1Q13562 356 aa17.55■□□□□ 0.4
SCLT1-201ENST00000281142 WRNQ14191 1432 aaPredicted RBP eCLIP17.54■□□□□ 0.4
SCLT1-201ENST00000281142 SYNJ1O43426 1573 aa17.53■□□□□ 0.4
SCLT1-201ENST00000281142 CUX1P39880 1505 aa17.53■□□□□ 0.4
SCLT1-201ENST00000281142 URB2Q14146 1524 aaKnown RBP17.53■□□□□ 0.4
SCLT1-201ENST00000281142 THOC2Q8NI27 1593 aaKnown RBP17.52■□□□□ 0.4
SCLT1-201ENST00000281142 ACIN1Q9UKV3 1341 aaKnown RBP17.52■□□□□ 0.39
SCLT1-201ENST00000281142 MRC2Q9UBG0 1479 aa17.51■□□□□ 0.39
SCLT1-201ENST00000281142 DNMBPQ6XZF7 1577 aa17.49■□□□□ 0.39
SCLT1-201ENST00000281142 TOP2BQ02880 1626 aa17.48■□□□□ 0.39
SCLT1-201ENST00000281142 BIVM-ERCC5R4GMW8 1640 aa17.48■□□□□ 0.39
SCLT1-201ENST00000281142 TOPBP1Q92547 1522 aa17.48■□□□□ 0.39
SCLT1-201ENST00000281142 WDR62O43379 1518 aa17.46■□□□□ 0.39
SCLT1-201ENST00000281142 CCER1Q8TC90 406 aaPredicted RBP17.46■□□□□ 0.38
SCLT1-201ENST00000281142 GTF3C3Q9Y5Q9 886 aa17.41■□□□□ 0.38
SCLT1-201ENST00000281142 FGD5Q6ZNL6 1462 aa17.39■□□□□ 0.37
SCLT1-201ENST00000281142 TTBK1Q5TCY1 1321 aaPredicted RBP17.39■□□□□ 0.37
SCLT1-201ENST00000281142 POLA1P09884 1462 aaPredicted RBP17.37■□□□□ 0.37
SCLT1-201ENST00000281142 DIEXFQ68CQ4 756 aaKnown RBP17.36■□□□□ 0.37
SCLT1-201ENST00000281142 CUX2O14529 1486 aa17.32■□□□□ 0.36
SCLT1-201ENST00000281142 RAD54L2Q9Y4B4 1467 aa17.31■□□□□ 0.36
SCLT1-201ENST00000281142 TARBP1Q13395 1621 aaKnown RBP17.28■□□□□ 0.36
SCLT1-201ENST00000281142 SOGA1O94964 1423 aa17.28■□□□□ 0.36
SCLT1-201ENST00000281142 WDR97A6NE52 1622 aa17.26■□□□□ 0.35
SCLT1-201ENST00000281142 CENPBP07199 599 aaPredicted RBP17.24■□□□□ 0.35
SCLT1-201ENST00000281142 IFT140Q96RY7 1462 aa17.23■□□□□ 0.35
SCLT1-201ENST00000281142 ABCA10Q8WWZ4 1543 aa17.22■□□□□ 0.35
SCLT1-201ENST00000281142 RUSC2Q8N2Y8 1516 aa17.19■□□□□ 0.34
SCLT1-201ENST00000281142 ZNF608Q9ULD9 1512 aaPredicted RBP17.18■□□□□ 0.34
SCLT1-201ENST00000281142 TDRD9Q8NDG6 1382 aaKnown RBP17.16■□□□□ 0.34
SCLT1-201ENST00000281142 YTHDC1Q96MU7 727 aaKnown RBP17.15■□□□□ 0.34
SCLT1-201ENST00000281142 ABCA5Q8WWZ7 1642 aa17.14■□□□□ 0.34
SCLT1-201ENST00000281142 EIF4G3O43432 1585 aaKnown RBP17.13■□□□□ 0.33
SCLT1-201ENST00000281142 AQRO60306 1485 aaKnown RBP eCLIP17.13■□□□□ 0.33
SCLT1-201ENST00000281142 KIF27Q86VH2 1401 aa17.12■□□□□ 0.33
SCLT1-201ENST00000281142 GAPVD1Q14C86 1478 aa17.09■□□□□ 0.33
SCLT1-201ENST00000281142 PBRM1Q86U86 1689 aa17.08■□□□□ 0.33
SCLT1-201ENST00000281142 ZNF316A6NFI3 1004 aaPredicted RBP17.05■□□□□ 0.32
SCLT1-201ENST00000281142 CEP162Q5TB80 1403 aa17.05■□□□□ 0.32
SCLT1-201ENST00000281142 EEA1Q15075 1411 aa17.04■□□□□ 0.32
SCLT1-201ENST00000281142 IGF1RP08069 1367 aa17.02■□□□□ 0.32
SCLT1-201ENST00000281142 ERICH3Q5RHP9 1530 aa17.01■□□□□ 0.31
SCLT1-201ENST00000281142 GRIN2BQ13224 1484 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms