RNA–Protein interactions for RNA: ENST00000262901.4

SIM1-201, Transcript of SIM bHLH transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIM1, Length 3,999 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIM1-201ENST00000262901 NISCHQ9Y2I1 1504 aa20.04■□□□□ 0.8
SIM1-201ENST00000262901 CCDC180Q9P1Z9 1646 aa17.4■□□□□ 0.38
SIM1-201ENST00000262901 DCAF8L2P0C7V8 631 aa17.27■□□□□ 0.35
SIM1-201ENST00000262901 ABCC9O60706 1549 aa16.91■□□□□ 0.3
SIM1-201ENST00000262901 ZCCHC6Q5VYS8 1495 aaKnown RBP16.75■□□□□ 0.27
SIM1-201ENST00000262901 SHROOM4Q9ULL8 1493 aa16.62■□□□□ 0.25
SIM1-201ENST00000262901 DCAF1Q9Y4B6 1507 aa16.47■□□□□ 0.23
SIM1-201ENST00000262901 NACADO15069 1562 aa16.4■□□□□ 0.22
SIM1-201ENST00000262901 RB1CC1Q8TDY2 1594 aa16.35■□□□□ 0.21
SIM1-201ENST00000262901 MYO15BQ96JP2 1530 aa16.32■□□□□ 0.2
SIM1-201ENST00000262901 SCRIBQ14160 1630 aa16.17■□□□□ 0.18
SIM1-201ENST00000262901 PELP1Q8IZL8 1130 aaKnown RBP16.17■□□□□ 0.18
SIM1-201ENST00000262901 SUPT5HO00267 1087 aaKnown RBP16.07■□□□□ 0.16
SIM1-201ENST00000262901 PABPN1Q86U42 306 aaKnown RBP eCLIP16.04■□□□□ 0.16
SIM1-201ENST00000262901 MYT1Q01538 1121 aa15.87■□□□□ 0.13
SIM1-201ENST00000262901 PRKCSHP14314 528 aaPredicted RBP15.65■□□□□ 0.1
SIM1-201ENST00000262901 CECR2Q9BXF3 1484 aa15.58■□□□□ 0.09
SIM1-201ENST00000262901 UNC13AQ9UPW8 1703 aa15.58■□□□□ 0.08
SIM1-201ENST00000262901 BICRAQ9NZM4 1560 aa15.57■□□□□ 0.08
SIM1-201ENST00000262901 BAZ1AQ9NRL2 1556 aaPredicted RBP15.56■□□□□ 0.08
SIM1-201ENST00000262901 RSF1Q96T23 1441 aaPredicted RBP15.54■□□□□ 0.08
SIM1-201ENST00000262901 MROH2BQ7Z745 1585 aa15.45■□□□□ 0.06
SIM1-201ENST00000262901 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
SIM1-201ENST00000262901 SMARCA4P51532 1647 aa15.38■□□□□ 0.05
SIM1-201ENST00000262901 TTBK1Q5TCY1 1321 aaPredicted RBP15.31■□□□□ 0.04
SIM1-201ENST00000262901 SMARCA2P51531 1590 aa15.3■□□□□ 0.04
SIM1-201ENST00000262901 BAZ1BQ9UIG0 1483 aaKnown RBP15.3■□□□□ 0.04
SIM1-201ENST00000262901 EIF4G1Q04637 1599 aaKnown RBP15.3■□□□□ 0.04
SIM1-201ENST00000262901 WIZO95785 1651 aa15.27■□□□□ 0.03
SIM1-201ENST00000262901 ATAD2BQ9ULI0 1458 aa15.26■□□□□ 0.03
SIM1-201ENST00000262901 SLC24A1O60721 1099 aa15.2■□□□□ 0.02
SIM1-201ENST00000262901 TOP2AP11388 1531 aaKnown RBP15.19■□□□□ 0.02
SIM1-201ENST00000262901 PCGF6Q9BYE7 350 aa15.17■□□□□ 0.02
SIM1-201ENST00000262901 NCAPD3P42695 1498 aa15.14■□□□□ 0.01
SIM1-201ENST00000262901 TRIM41Q8WV44 630 aa15.12■□□□□ 0.01
SIM1-201ENST00000262901 CC2D2AQ9P2K1 1620 aa15.1■□□□□ 0.01
SIM1-201ENST00000262901 FAM9AQ8IZU1 332 aaPredicted RBP15.08■□□□□ 0
SIM1-201ENST00000262901 PEG3Q9GZU2 1588 aa15.08■□□□□ 0
SIM1-201ENST00000262901 CHIC1Q5VXU3 224 aa15.08■□□□□ 0
SIM1-201ENST00000262901 CCDC88BA6NC98 1476 aa15.07■□□□□ 0
SIM1-201ENST00000262901 APLP2Q06481 763 aa15.05■□□□□ 0
SIM1-201ENST00000262901 HMGXB3Q12766 1538 aa15.04■□□□□ -0
SIM1-201ENST00000262901 BCL11AQ9H165 835 aa15.02■□□□□ -0
SIM1-201ENST00000262901 SCAF1Q9H7N4 1312 aaKnown RBP14.92□□□□□ -0.02
SIM1-201ENST00000262901 ERICH6Q7L0X2 663 aa14.9□□□□□ -0.02
SIM1-201ENST00000262901 DNAJC5BQ9UF47 199 aa14.9□□□□□ -0.02
SIM1-201ENST00000262901 CADPSQ9ULU8 1353 aa14.88□□□□□ -0.03
SIM1-201ENST00000262901 HRCP23327 699 aa14.81□□□□□ -0.04
SIM1-201ENST00000262901 WRNQ14191 1432 aaPredicted RBP eCLIP14.79□□□□□ -0.04
SIM1-201ENST00000262901 PDS5BQ9NTI5 1447 aa14.77□□□□□ -0.05
SIM1-201ENST00000262901 CFTRP13569 1480 aa14.76□□□□□ -0.05
SIM1-201ENST00000262901 ABCC8Q09428 1581 aa14.69□□□□□ -0.06
SIM1-201ENST00000262901 ERCC6Q03468 1493 aa14.69□□□□□ -0.06
SIM1-201ENST00000262901 FANCD2Q9BXW9 1451 aa14.68□□□□□ -0.06
SIM1-201ENST00000262901 PPARGC1BQ86YN6 1023 aaKnown RBP14.68□□□□□ -0.06
SIM1-201ENST00000262901 NESP48681 1621 aa14.66□□□□□ -0.06
SIM1-201ENST00000262901 CEP164Q9UPV0 1460 aa14.65□□□□□ -0.06
SIM1-201ENST00000262901 LAMC3Q9Y6N6 1575 aa14.64□□□□□ -0.07
SIM1-201ENST00000262901 LOC105371045A0A1W2PR82 267 aa14.63□□□□□ -0.07
SIM1-201ENST00000262901 UBTFP17480 764 aaKnown RBP14.6□□□□□ -0.07
SIM1-201ENST00000262901 CSRNP3Q8WYN3 585 aa14.58□□□□□ -0.08
SIM1-201ENST00000262901 RANGAP1P46060 587 aaPredicted RBP14.58□□□□□ -0.08
SIM1-201ENST00000262901 EEA1Q15075 1411 aa14.54□□□□□ -0.08
SIM1-201ENST00000262901 CCER1Q8TC90 406 aaPredicted RBP14.53□□□□□ -0.08
SIM1-201ENST00000262901 KIF27Q86VH2 1401 aa14.5□□□□□ -0.09
SIM1-201ENST00000262901 SYNJ1O43426 1573 aa14.47□□□□□ -0.09
SIM1-201ENST00000262901 SOGA1O94964 1423 aa14.47□□□□□ -0.09
SIM1-201ENST00000262901 CUX1P39880 1505 aa14.46□□□□□ -0.1
SIM1-201ENST00000262901 MRC2Q9UBG0 1479 aa14.46□□□□□ -0.1
SIM1-201ENST00000262901 CUX2O14529 1486 aa14.45□□□□□ -0.1
SIM1-201ENST00000262901 TOP2BQ02880 1626 aa14.45□□□□□ -0.1
SIM1-201ENST00000262901 FGD5Q6ZNL6 1462 aa14.45□□□□□ -0.1
SIM1-201ENST00000262901 ZEB1P37275 1124 aaPredicted RBP14.44□□□□□ -0.1
SIM1-201ENST00000262901 TOPBP1Q92547 1522 aa14.43□□□□□ -0.1
SIM1-201ENST00000262901 DNMBPQ6XZF7 1577 aa14.42□□□□□ -0.1
SIM1-201ENST00000262901 TRIM26Q12899 539 aaPredicted RBP14.41□□□□□ -0.1
SIM1-201ENST00000262901 PRDM2Q13029 1718 aa14.41□□□□□ -0.1
SIM1-201ENST00000262901 DAXXQ9UER7 740 aaPredicted RBP14.41□□□□□ -0.1
SIM1-201ENST00000262901 URB2Q14146 1524 aaKnown RBP14.36□□□□□ -0.11
SIM1-201ENST00000262901 TDRD9Q8NDG6 1382 aaKnown RBP14.36□□□□□ -0.11
SIM1-201ENST00000262901 POLA1P09884 1462 aaPredicted RBP14.35□□□□□ -0.11
SIM1-201ENST00000262901 RAD54L2Q9Y4B4 1467 aa14.35□□□□□ -0.11
SIM1-201ENST00000262901 BIVM-ERCC5R4GMW8 1640 aa14.35□□□□□ -0.11
SIM1-201ENST00000262901 FBLN2P98095 1184 aa14.34□□□□□ -0.11
SIM1-201ENST00000262901 GOLGA3Q08378 1498 aa14.33□□□□□ -0.12
SIM1-201ENST00000262901 RUSC2Q8N2Y8 1516 aa14.32□□□□□ -0.12
SIM1-201ENST00000262901 KIF21AQ7Z4S6 1674 aa14.32□□□□□ -0.12
SIM1-201ENST00000262901 CENPBP07199 599 aaPredicted RBP14.31□□□□□ -0.12
SIM1-201ENST00000262901 CARMIL1Q5VZK9 1371 aa14.3□□□□□ -0.12
SIM1-201ENST00000262901 YTHDC1Q96MU7 727 aaKnown RBP14.3□□□□□ -0.12
SIM1-201ENST00000262901 IFT140Q96RY7 1462 aa14.28□□□□□ -0.12
SIM1-201ENST00000262901 PLEKHG5O94827 1062 aa14.26□□□□□ -0.13
SIM1-201ENST00000262901 CHMP7Q8WUX9 453 aaPredicted RBP14.26□□□□□ -0.13
SIM1-201ENST00000262901 GAPVD1Q14C86 1478 aa14.25□□□□□ -0.13
SIM1-201ENST00000262901 ABCA10Q8WWZ4 1543 aa14.25□□□□□ -0.13
SIM1-201ENST00000262901 EIF5BO60841 1220 aaKnown RBP14.25□□□□□ -0.13
SIM1-201ENST00000262901 IGF1RP08069 1367 aa14.24□□□□□ -0.13
SIM1-201ENST00000262901 TNIKQ9UKE5 1360 aa14.23□□□□□ -0.13
SIM1-201ENST00000262901 WDR62O43379 1518 aa14.21□□□□□ -0.13
SIM1-201ENST00000262901 AQRO60306 1485 aaKnown RBP eCLIP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms