RNA–Protein interactions for RNA: ENST00000261007.9

CHRNA1-201, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 2 BASIC

Gene CHRNA1, Length 1,980 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-201ENST00000261007 NISCHQ9Y2I1 1504 aa22.92■■□□□ 1.26
CHRNA1-201ENST00000261007 CCDC180Q9P1Z9 1646 aa19.85■□□□□ 0.77
CHRNA1-201ENST00000261007 ZCCHC6Q5VYS8 1495 aaKnown RBP19.35■□□□□ 0.69
CHRNA1-201ENST00000261007 DCAF1Q9Y4B6 1507 aa19.02■□□□□ 0.64
CHRNA1-201ENST00000261007 SHROOM4Q9ULL8 1493 aa18.88■□□□□ 0.61
CHRNA1-201ENST00000261007 DCAF8L2P0C7V8 631 aa18.7■□□□□ 0.58
CHRNA1-201ENST00000261007 MYO15BQ96JP2 1530 aa18.66■□□□□ 0.58
CHRNA1-201ENST00000261007 SUPT5HO00267 1087 aaKnown RBP18.41■□□□□ 0.54
CHRNA1-201ENST00000261007 NACADO15069 1562 aa18.38■□□□□ 0.53
CHRNA1-201ENST00000261007 ABCC9O60706 1549 aa18.27■□□□□ 0.52
CHRNA1-201ENST00000261007 SCRIBQ14160 1630 aa18.22■□□□□ 0.51
CHRNA1-201ENST00000261007 RB1CC1Q8TDY2 1594 aa18.11■□□□□ 0.49
CHRNA1-201ENST00000261007 HRCP23327 699 aa17.99■□□□□ 0.47
CHRNA1-201ENST00000261007 RSF1Q96T23 1441 aaPredicted RBP17.92■□□□□ 0.46
CHRNA1-201ENST00000261007 CHIC1Q5VXU3 224 aa17.88■□□□□ 0.45
CHRNA1-201ENST00000261007 AEBP2Q6ZN18 517 aaPredicted RBP17.82■□□□□ 0.44
CHRNA1-201ENST00000261007 CECR2Q9BXF3 1484 aa17.71■□□□□ 0.43
CHRNA1-201ENST00000261007 BAZ1AQ9NRL2 1556 aaPredicted RBP17.7■□□□□ 0.42
CHRNA1-201ENST00000261007 UNC13AQ9UPW8 1703 aa17.69■□□□□ 0.42
CHRNA1-201ENST00000261007 MROH2BQ7Z745 1585 aa17.68■□□□□ 0.42
CHRNA1-201ENST00000261007 WIZO95785 1651 aa17.56■□□□□ 0.4
CHRNA1-201ENST00000261007 SMARCA4P51532 1647 aa17.53■□□□□ 0.4
CHRNA1-201ENST00000261007 PCGF6Q9BYE7 350 aa17.52■□□□□ 0.4
CHRNA1-201ENST00000261007 BICRAQ9NZM4 1560 aa17.48■□□□□ 0.39
CHRNA1-201ENST00000261007 TOP2AP11388 1531 aaKnown RBP17.45■□□□□ 0.38
CHRNA1-201ENST00000261007 PPARGC1BQ86YN6 1023 aaKnown RBP17.37■□□□□ 0.37
CHRNA1-201ENST00000261007 PEG3Q9GZU2 1588 aa17.33■□□□□ 0.37
CHRNA1-201ENST00000261007 TRIM41Q8WV44 630 aa17.33■□□□□ 0.37
CHRNA1-201ENST00000261007 PELP1Q8IZL8 1130 aaKnown RBP17.31■□□□□ 0.36
CHRNA1-201ENST00000261007 EIF4G1Q04637 1599 aaKnown RBP17.29■□□□□ 0.36
CHRNA1-201ENST00000261007 PABPN1Q86U42 306 aaKnown RBP eCLIP17.28■□□□□ 0.36
CHRNA1-201ENST00000261007 SMARCA2P51531 1590 aa17.27■□□□□ 0.35
CHRNA1-201ENST00000261007 CCDC88BA6NC98 1476 aa17.23■□□□□ 0.35
CHRNA1-201ENST00000261007 TRIM26Q12899 539 aaPredicted RBP17.19■□□□□ 0.34
CHRNA1-201ENST00000261007 LOC105371045A0A1W2PR82 267 aa17.14■□□□□ 0.33
CHRNA1-201ENST00000261007 ZEB1P37275 1124 aaPredicted RBP17.13■□□□□ 0.33
CHRNA1-201ENST00000261007 ATAD2BQ9ULI0 1458 aa17.13■□□□□ 0.33
CHRNA1-201ENST00000261007 BAZ1BQ9UIG0 1483 aaKnown RBP17.08■□□□□ 0.32
CHRNA1-201ENST00000261007 HMGXB3Q12766 1538 aa16.97■□□□□ 0.31
CHRNA1-201ENST00000261007 ABCC8Q09428 1581 aa16.97■□□□□ 0.31
CHRNA1-201ENST00000261007 EEA1Q15075 1411 aa16.95■□□□□ 0.3
CHRNA1-201ENST00000261007 FAM9AQ8IZU1 332 aaPredicted RBP16.95■□□□□ 0.3
CHRNA1-201ENST00000261007 NCAPD3P42695 1498 aa16.93■□□□□ 0.3
CHRNA1-201ENST00000261007 WRNQ14191 1432 aaPredicted RBP eCLIP16.88■□□□□ 0.29
CHRNA1-201ENST00000261007 SCAF1Q9H7N4 1312 aaKnown RBP16.82■□□□□ 0.28
CHRNA1-201ENST00000261007 SYNJ1O43426 1573 aa16.75■□□□□ 0.27
CHRNA1-201ENST00000261007 SOGA1O94964 1423 aa16.74■□□□□ 0.27
CHRNA1-201ENST00000261007 CSRNP3Q8WYN3 585 aa16.73■□□□□ 0.27
CHRNA1-201ENST00000261007 TOP2BQ02880 1626 aa16.71■□□□□ 0.26
CHRNA1-201ENST00000261007 TNIKQ9UKE5 1360 aa16.7■□□□□ 0.26
CHRNA1-201ENST00000261007 BIVM-ERCC5R4GMW8 1640 aa16.69■□□□□ 0.26
CHRNA1-201ENST00000261007 MYT1Q01538 1121 aa16.68■□□□□ 0.26
CHRNA1-201ENST00000261007 GOLGA3Q08378 1498 aa16.68■□□□□ 0.26
CHRNA1-201ENST00000261007 CFTRP13569 1480 aa16.66■□□□□ 0.26
CHRNA1-201ENST00000261007 KIF21BO75037 1637 aa16.65■□□□□ 0.26
CHRNA1-201ENST00000261007 PRDM2Q13029 1718 aa16.65■□□□□ 0.26
CHRNA1-201ENST00000261007 CEP164Q9UPV0 1460 aa16.64■□□□□ 0.25
CHRNA1-201ENST00000261007 EHMT2Q96KQ7 1210 aa16.63■□□□□ 0.25
CHRNA1-201ENST00000261007 RUSC2Q8N2Y8 1516 aa16.62■□□□□ 0.25
CHRNA1-201ENST00000261007 CEP162Q5TB80 1403 aa16.61■□□□□ 0.25
CHRNA1-201ENST00000261007 CC2D2AQ9P2K1 1620 aa16.58■□□□□ 0.24
CHRNA1-201ENST00000261007 ACIN1Q9UKV3 1341 aaKnown RBP16.56■□□□□ 0.24
CHRNA1-201ENST00000261007 UBTFP17480 764 aaKnown RBP16.53■□□□□ 0.24
CHRNA1-201ENST00000261007 CUX1P39880 1505 aa16.52■□□□□ 0.23
CHRNA1-201ENST00000261007 CADPSQ9ULU8 1353 aa16.52■□□□□ 0.23
CHRNA1-201ENST00000261007 ERICH3Q5RHP9 1530 aa16.48■□□□□ 0.23
CHRNA1-201ENST00000261007 KIF27Q86VH2 1401 aa16.44■□□□□ 0.22
CHRNA1-201ENST00000261007 CENPBP07199 599 aaPredicted RBP16.42■□□□□ 0.22
CHRNA1-201ENST00000261007 PRXQ9BXM0 1461 aa16.41■□□□□ 0.22
CHRNA1-201ENST00000261007 NEUROD1Q13562 356 aa16.41■□□□□ 0.22
CHRNA1-201ENST00000261007 RAPGEF2Q9Y4G8 1499 aa16.41■□□□□ 0.22
CHRNA1-201ENST00000261007 CLIP1P30622 1438 aa16.4■□□□□ 0.22
CHRNA1-201ENST00000261007 VPS8Q8N3P4 1428 aa16.33■□□□□ 0.21
CHRNA1-201ENST00000261007 FANCD2Q9BXW9 1451 aa16.33■□□□□ 0.2
CHRNA1-201ENST00000261007 CCER1Q8TC90 406 aaPredicted RBP16.32■□□□□ 0.2
CHRNA1-201ENST00000261007 GTF3C3Q9Y5Q9 886 aa16.32■□□□□ 0.2
CHRNA1-201ENST00000261007 DIEXFQ68CQ4 756 aaKnown RBP16.31■□□□□ 0.2
CHRNA1-201ENST00000261007 LAMC3Q9Y6N6 1575 aa16.31■□□□□ 0.2
CHRNA1-201ENST00000261007 DNMBPQ6XZF7 1577 aa16.29■□□□□ 0.2
CHRNA1-201ENST00000261007 FGD5Q6ZNL6 1462 aa16.28■□□□□ 0.2
CHRNA1-201ENST00000261007 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.27■□□□□ 0.19
CHRNA1-201ENST00000261007 CUX2O14529 1486 aa16.26■□□□□ 0.19
CHRNA1-201ENST00000261007 APLP2Q06481 763 aa16.22■□□□□ 0.19
CHRNA1-201ENST00000261007 TOPBP1Q92547 1522 aa16.2■□□□□ 0.18
CHRNA1-201ENST00000261007 IGF1RP08069 1367 aa16.2■□□□□ 0.18
CHRNA1-201ENST00000261007 ABCA10Q8WWZ4 1543 aa16.19■□□□□ 0.18
CHRNA1-201ENST00000261007 PDS5BQ9NTI5 1447 aa16.17■□□□□ 0.18
CHRNA1-201ENST00000261007 ARAP1Q96P48 1450 aa16.16■□□□□ 0.18
CHRNA1-201ENST00000261007 NESP48681 1621 aa16.15■□□□□ 0.18
CHRNA1-201ENST00000261007 CARMIL1Q5VZK9 1371 aa16.15■□□□□ 0.18
CHRNA1-201ENST00000261007 POLA1P09884 1462 aaPredicted RBP16.14■□□□□ 0.17
CHRNA1-201ENST00000261007 CUL7Q14999 1698 aa16.12■□□□□ 0.17
CHRNA1-201ENST00000261007 ZNF316A6NFI3 1004 aaPredicted RBP16.1■□□□□ 0.17
CHRNA1-201ENST00000261007 ARHGAP35Q9NRY4 1499 aa16.08■□□□□ 0.17
CHRNA1-201ENST00000261007 WDR97A6NE52 1622 aa16.08■□□□□ 0.16
CHRNA1-201ENST00000261007 URB2Q14146 1524 aaKnown RBP16.07■□□□□ 0.16
CHRNA1-201ENST00000261007 TTBK1Q5TCY1 1321 aaPredicted RBP16.06■□□□□ 0.16
CHRNA1-201ENST00000261007 RAD54L2Q9Y4B4 1467 aa16.05■□□□□ 0.16
CHRNA1-201ENST00000261007 RANGAP1P46060 587 aaPredicted RBP16.04■□□□□ 0.16
CHRNA1-201ENST00000261007 MAP3K1Q13233 1512 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms