RNA–Protein interactions for RNA: ENSMUST00000093490.8

Clcn3-203, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 5,518 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-203ENSMUST00000093490 Rhox8Q6VSS7 320 aa28.03■■■□□ 2.08
Clcn3-203ENSMUST00000093490 Rpgrip1Q9EPQ2 1331 aa25.92■■□□□ 1.74
Clcn3-203ENSMUST00000093490 NischQ80TM9 1593 aa25.45■■□□□ 1.67
Clcn3-203ENSMUST00000093490 Esf1Q3V1V3 845 aaKnown RBP25.04■■□□□ 1.6
Clcn3-203ENSMUST00000093490 Ccdc136Q3TVA9 1136 aa24.84■■□□□ 1.57
Clcn3-203ENSMUST00000093490 Trim41Q5NCC3 630 aa24.81■■□□□ 1.56
Clcn3-203ENSMUST00000093490 Cngb1E1AZ71 1325 aa24.78■■□□□ 1.56
Clcn3-203ENSMUST00000093490 Las1lA2BE28 776 aaKnown RBP24.76■■□□□ 1.55
Clcn3-203ENSMUST00000093490 Ehmt2Q9Z148 1263 aaKnown RBP24.61■■□□□ 1.53
Clcn3-203ENSMUST00000093490 Zeb1Q64318 1117 aa24.43■■□□□ 1.5
Clcn3-203ENSMUST00000093490 Npm2Q80W85 207 aa24.33■■□□□ 1.49
Clcn3-203ENSMUST00000093490 Wdr66E9Q743 1299 aa24.19■■□□□ 1.46
Clcn3-203ENSMUST00000093490 Pelp1Q9DBD5 1123 aaKnown RBP24.18■■□□□ 1.46
Clcn3-203ENSMUST00000093490 Gab3Q8BSM5 595 aa24.11■■□□□ 1.45
Clcn3-203ENSMUST00000093490 Ube2uB1AUC4 352 aa24.08■■□□□ 1.45
Clcn3-203ENSMUST00000093490 Myt1lP97500 1187 aa23.88■■□□□ 1.41
Clcn3-203ENSMUST00000093490 Abcc9P70170 1546 aa23.81■■□□□ 1.4
Clcn3-203ENSMUST00000093490 Acin1Q9JIX8 1338 aaKnown RBP23.78■■□□□ 1.4
Clcn3-203ENSMUST00000093490 Ccdc180J3QNE4 1664 aa23.6■■□□□ 1.37
Clcn3-203ENSMUST00000093490 Rtl1Q7M732 1744 aa23.58■■□□□ 1.37
Clcn3-203ENSMUST00000093490 Zcchc6Q5BLK4 1491 aaKnown RBP23.55■■□□□ 1.36
Clcn3-203ENSMUST00000093490 NefmP08553 848 aa23.55■■□□□ 1.36
Clcn3-203ENSMUST00000093490 CenpbP27790 599 aa23.51■■□□□ 1.35
Clcn3-203ENSMUST00000093490 HrcG5E8J6 738 aa23.41■■□□□ 1.34
Clcn3-203ENSMUST00000093490 Il27Q8K3I6 234 aa23.41■■□□□ 1.34
Clcn3-203ENSMUST00000093490 Gm35339A0A140LHH9 1649 aa23.34■■□□□ 1.33
Clcn3-203ENSMUST00000093490 Stra8P70278 393 aa23.3■■□□□ 1.32
Clcn3-203ENSMUST00000093490 Abcc8B2RUS7 1588 aa23.3■■□□□ 1.32
Clcn3-203ENSMUST00000093490 UbtfP25976 765 aaKnown RBP23.13■■□□□ 1.29
Clcn3-203ENSMUST00000093490 Myt1Q8CFC2 1127 aa22.93■■□□□ 1.26
Clcn3-203ENSMUST00000093490 Amer1Q7TS75 1132 aa22.9■■□□□ 1.26
Clcn3-203ENSMUST00000093490 Npm1Q61937 292 aaKnown RBP22.89■■□□□ 1.26
Clcn3-203ENSMUST00000093490 Cdk11bP24788 784 aaKnown RBP22.87■■□□□ 1.25
Clcn3-203ENSMUST00000093490 Pcgf6Q99NA9 353 aa22.85■■□□□ 1.25
Clcn3-203ENSMUST00000093490 Tnnt3Q9QZ47 272 aa22.75■■□□□ 1.23
Clcn3-203ENSMUST00000093490 Ap3b1Q9Z1T1 1105 aa22.68■■□□□ 1.22
Clcn3-203ENSMUST00000093490 Slc24a1Q91WD8 1130 aa22.67■■□□□ 1.22
Clcn3-203ENSMUST00000093490 Fam50aQ9WV03 339 aaKnown RBP22.65■■□□□ 1.22
Clcn3-203ENSMUST00000093490 Brd4Q9ESU6 1400 aaKnown RBP22.64■■□□□ 1.21
Clcn3-203ENSMUST00000093490 Anp32bQ9EST5 272 aaKnown RBP22.61■■□□□ 1.21
Clcn3-203ENSMUST00000093490 Nop58Q6DFW4 536 aaKnown RBP22.56■■□□□ 1.2
Clcn3-203ENSMUST00000093490 NclP09405 707 aaKnown RBP22.52■■□□□ 1.2
Clcn3-203ENSMUST00000093490 Os9Q8K2C7 672 aa22.47■■□□□ 1.19
Clcn3-203ENSMUST00000093490 NrdcQ8BHG1 1161 aa22.45■■□□□ 1.18
Clcn3-203ENSMUST00000093490 Rb1cc1Q9ESK9 1588 aa22.41■■□□□ 1.18
Clcn3-203ENSMUST00000093490 NacadQ5SWP3 1504 aa22.38■■□□□ 1.17
Clcn3-203ENSMUST00000093490 Supt5hO55201 1082 aaKnown RBP22.34■■□□□ 1.17
Clcn3-203ENSMUST00000093490 TonslQ6NZL6 1363 aa22.34■■□□□ 1.17
Clcn3-203ENSMUST00000093490 Rtl5Q5DTT4 599 aa22.32■■□□□ 1.16
Clcn3-203ENSMUST00000093490 NeflP08551 543 aa22.31■■□□□ 1.16
Clcn3-203ENSMUST00000093490 Neurod1Q60867 357 aa22.27■■□□□ 1.16
Clcn3-203ENSMUST00000093490 4933416C03RikQ3V063 378 aa22.26■■□□□ 1.15
Clcn3-203ENSMUST00000093490 Ubl4bQ9CQ84 188 aa22.25■■□□□ 1.15
Clcn3-203ENSMUST00000093490 Hdac5Q9Z2V6 1113 aa22.22■■□□□ 1.15
Clcn3-203ENSMUST00000093490 4930567H17RikQ3V0K5 233 aa22.19■■□□□ 1.14
Clcn3-203ENSMUST00000093490 Ttbk1Q6PCN3 1308 aa22.18■■□□□ 1.14
Clcn3-203ENSMUST00000093490 Mier1Q5UAK0 511 aa22.14■■□□□ 1.14
Clcn3-203ENSMUST00000093490 Gm13697A2AK42 830 aa22.13■■□□□ 1.13
Clcn3-203ENSMUST00000093490 Lmod2Q3UHZ5 550 aa22.12■■□□□ 1.13
Clcn3-203ENSMUST00000093490 Eif5bQ05D44 1216 aaKnown RBP22.11■■□□□ 1.13
Clcn3-203ENSMUST00000093490 Hnrnpul2Q00PI9 745 aaKnown RBP22.02■■□□□ 1.12
Clcn3-203ENSMUST00000093490 ClspnQ80YR7 1315 aa22.01■■□□□ 1.11
Clcn3-203ENSMUST00000093490 Ifnlr1Q8CGK5 535 aa21.99■■□□□ 1.11
Clcn3-203ENSMUST00000093490 Dcaf1Q80TR8 1506 aa21.99■■□□□ 1.11
Clcn3-203ENSMUST00000093490 Cep164Q5DU05 1446 aa21.98■■□□□ 1.11
Clcn3-203ENSMUST00000093490 Ppargc1bQ8VHJ7 1014 aa21.97■■□□□ 1.11
Clcn3-203ENSMUST00000093490 Ercc6F8VPZ5 1481 aa21.96■■□□□ 1.11
Clcn3-203ENSMUST00000093490 Plekhg3Q4VAC9 1341 aa21.96■■□□□ 1.11
Clcn3-203ENSMUST00000093490 Baz1aO88379 1555 aa21.94■■□□□ 1.1
Clcn3-203ENSMUST00000093490 Clip1Q922J3 1391 aa21.91■■□□□ 1.1
Clcn3-203ENSMUST00000093490 Zbtb7cQ8VCZ7 619 aa21.9■■□□□ 1.1
Clcn3-203ENSMUST00000093490 Anp32aO35381 247 aa21.87■■□□□ 1.09
Clcn3-203ENSMUST00000093490 Ccer2J3QPU5 274 aa21.84■■□□□ 1.09
Clcn3-203ENSMUST00000093490 Rsf1E9PWW9 1441 aaKnown RBP21.84■■□□□ 1.09
Clcn3-203ENSMUST00000093490 Fkbp15Q6P9Q6 1216 aaKnown RBP21.8■■□□□ 1.08
Clcn3-203ENSMUST00000093490 Erich6D3Z6S9 713 aa21.75■■□□□ 1.07
Clcn3-203ENSMUST00000093490 Atp1b4Q99ME6 356 aa21.72■■□□□ 1.07
Clcn3-203ENSMUST00000093490 Chic1Q8CBW7 227 aa21.71■■□□□ 1.07
Clcn3-203ENSMUST00000093490 Gm13695A2AK44 830 aa21.71■■□□□ 1.07
Clcn3-203ENSMUST00000093490 Kif15Q6P9L6 1387 aa21.69■■□□□ 1.06
Clcn3-203ENSMUST00000093490 Ccdc18Q640L5 1455 aa21.68■■□□□ 1.06
Clcn3-203ENSMUST00000093490 Clstn2Q9ER65 966 aa21.66■■□□□ 1.06
Clcn3-203ENSMUST00000093490 Kdm5dQ62240 1548 aa21.64■■□□□ 1.05
Clcn3-203ENSMUST00000093490 Anks4bQ8K3X6 423 aa21.63■■□□□ 1.05
Clcn3-203ENSMUST00000093490 Golga3P55937 1487 aa21.62■■□□□ 1.05
Clcn3-203ENSMUST00000093490 Pds5bQ4VA53 1446 aaKnown RBP21.57■■□□□ 1.04
Clcn3-203ENSMUST00000093490 DiexfQ8BTT6 772 aaKnown RBP21.57■■□□□ 1.04
Clcn3-203ENSMUST00000093490 Nlrp6Q91WS2 869 aa21.53■■□□□ 1.04
Clcn3-203ENSMUST00000093490 Aplp2Q06335 707 aa21.49■■□□□ 1.03
Clcn3-203ENSMUST00000093490 BlmO88700 1416 aa21.47■■□□□ 1.03
Clcn3-203ENSMUST00000093490 Sall2Q9QX96 1004 aa21.45■■□□□ 1.02
Clcn3-203ENSMUST00000093490 Setd5Q5XJV7 1441 aa21.45■■□□□ 1.02
Clcn3-203ENSMUST00000093490 DaxxO35613 739 aa21.43■■□□□ 1.02
Clcn3-203ENSMUST00000093490 Safb2Q80YR5 991 aaKnown RBP21.43■■□□□ 1.02
Clcn3-203ENSMUST00000093490 Plppr3Q7TPB0 716 aa21.36■■□□□ 1.01
Clcn3-203ENSMUST00000093490 Csrnp3P59055 597 aa21.35■■□□□ 1.01
Clcn3-203ENSMUST00000093490 Zbtb4Q5F293 982 aa21.32■■□□□ 1
Clcn3-203ENSMUST00000093490 Chic2Q9D9G3 165 aa21.28■■□□□ 1
Clcn3-203ENSMUST00000093490 Eid3Q3V124 375 aa21.26■□□□□ 0.99
Clcn3-203ENSMUST00000093490 Eea1Q8BL66 1411 aa21.25■□□□□ 0.99
Retrieved 100 of 22,080 RNA–protein pairs in 50.6 ms