RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Rhox8Q6VSS7 320 aa18.32■□□□□ 0.52
Ccdc40-201ENSMUST00000035935 NischQ80TM9 1593 aa17.16■□□□□ 0.34
Ccdc40-201ENSMUST00000035935 Rpgrip1Q9EPQ2 1331 aa16.91■□□□□ 0.3
Ccdc40-201ENSMUST00000035935 Ccdc136Q3TVA9 1136 aa16.39■□□□□ 0.21
Ccdc40-201ENSMUST00000035935 Trim41Q5NCC3 630 aa16.31■□□□□ 0.2
Ccdc40-201ENSMUST00000035935 Abcc9P70170 1546 aa16.19■□□□□ 0.18
Ccdc40-201ENSMUST00000035935 Esf1Q3V1V3 845 aaKnown RBP16.17■□□□□ 0.18
Ccdc40-201ENSMUST00000035935 Cngb1E1AZ71 1325 aa16.17■□□□□ 0.18
Ccdc40-201ENSMUST00000035935 Ehmt2Q9Z148 1263 aaKnown RBP16.15■□□□□ 0.18
Ccdc40-201ENSMUST00000035935 Rtl1Q7M732 1744 aa16.13■□□□□ 0.17
Ccdc40-201ENSMUST00000035935 Ccdc180J3QNE4 1664 aa16.12■□□□□ 0.17
Ccdc40-201ENSMUST00000035935 HrcG5E8J6 738 aa15.88■□□□□ 0.13
Ccdc40-201ENSMUST00000035935 Gab3Q8BSM5 595 aa15.88■□□□□ 0.13
Ccdc40-201ENSMUST00000035935 Las1lA2BE28 776 aaKnown RBP15.86■□□□□ 0.13
Ccdc40-201ENSMUST00000035935 Abcc8B2RUS7 1588 aa15.82■□□□□ 0.12
Ccdc40-201ENSMUST00000035935 Acin1Q9JIX8 1338 aaKnown RBP15.78■□□□□ 0.12
Ccdc40-201ENSMUST00000035935 Npm2Q80W85 207 aa15.76■□□□□ 0.11
Ccdc40-201ENSMUST00000035935 Wdr66E9Q743 1299 aa15.67■□□□□ 0.1
Ccdc40-201ENSMUST00000035935 Zeb1Q64318 1117 aa15.65■□□□□ 0.1
Ccdc40-201ENSMUST00000035935 NefmP08553 848 aa15.6■□□□□ 0.09
Ccdc40-201ENSMUST00000035935 Myt1lP97500 1187 aa15.58■□□□□ 0.08
Ccdc40-201ENSMUST00000035935 Zcchc6Q5BLK4 1491 aaKnown RBP15.55■□□□□ 0.08
Ccdc40-201ENSMUST00000035935 Gm35339A0A140LHH9 1649 aa15.55■□□□□ 0.08
Ccdc40-201ENSMUST00000035935 Ube2uB1AUC4 352 aa15.48■□□□□ 0.07
Ccdc40-201ENSMUST00000035935 UbtfP25976 765 aaKnown RBP15.33■□□□□ 0.05
Ccdc40-201ENSMUST00000035935 Pelp1Q9DBD5 1123 aaKnown RBP15.25■□□□□ 0.03
Ccdc40-201ENSMUST00000035935 Stra8P70278 393 aa15.15■□□□□ 0.02
Ccdc40-201ENSMUST00000035935 Il27Q8K3I6 234 aa15.13■□□□□ 0.01
Ccdc40-201ENSMUST00000035935 Rb1cc1Q9ESK9 1588 aa15.08■□□□□ 0
Ccdc40-201ENSMUST00000035935 Brd4Q9ESU6 1400 aaKnown RBP15.05■□□□□ 0
Ccdc40-201ENSMUST00000035935 Pcgf6Q99NA9 353 aa15.04■□□□□ -0
Ccdc40-201ENSMUST00000035935 CenpbP27790 599 aa15.01□□□□□ -0.01
Ccdc40-201ENSMUST00000035935 Dcaf1Q80TR8 1506 aa14.96□□□□□ -0.01
Ccdc40-201ENSMUST00000035935 Cep164Q5DU05 1446 aa14.94□□□□□ -0.02
Ccdc40-201ENSMUST00000035935 Cdk11bP24788 784 aaKnown RBP14.93□□□□□ -0.02
Ccdc40-201ENSMUST00000035935 NacadQ5SWP3 1504 aa14.91□□□□□ -0.02
Ccdc40-201ENSMUST00000035935 Mier1Q5UAK0 511 aa14.86□□□□□ -0.03
Ccdc40-201ENSMUST00000035935 Ap3b1Q9Z1T1 1105 aa14.86□□□□□ -0.03
Ccdc40-201ENSMUST00000035935 Fam50aQ9WV03 339 aaKnown RBP14.84□□□□□ -0.03
Ccdc40-201ENSMUST00000035935 TonslQ6NZL6 1363 aa14.84□□□□□ -0.03
Ccdc40-201ENSMUST00000035935 Baz1aO88379 1555 aa14.82□□□□□ -0.04
Ccdc40-201ENSMUST00000035935 Tnnt3Q9QZ47 272 aa14.8□□□□□ -0.04
Ccdc40-201ENSMUST00000035935 Nop58Q6DFW4 536 aaKnown RBP14.78□□□□□ -0.04
Ccdc40-201ENSMUST00000035935 Npm1Q61937 292 aaKnown RBP14.77□□□□□ -0.05
Ccdc40-201ENSMUST00000035935 NclP09405 707 aaKnown RBP14.76□□□□□ -0.05
Ccdc40-201ENSMUST00000035935 Supt5hO55201 1082 aaKnown RBP14.76□□□□□ -0.05
Ccdc40-201ENSMUST00000035935 Slc24a1Q91WD8 1130 aa14.68□□□□□ -0.06
Ccdc40-201ENSMUST00000035935 Chic1Q8CBW7 227 aa14.68□□□□□ -0.06
Ccdc40-201ENSMUST00000035935 Anp32bQ9EST5 272 aaKnown RBP14.68□□□□□ -0.06
Ccdc40-201ENSMUST00000035935 NrdcQ8BHG1 1161 aa14.66□□□□□ -0.06
Ccdc40-201ENSMUST00000035935 Plekhg3Q4VAC9 1341 aa14.61□□□□□ -0.07
Ccdc40-201ENSMUST00000035935 ClspnQ80YR7 1315 aa14.61□□□□□ -0.07
Ccdc40-201ENSMUST00000035935 Clip1Q922J3 1391 aa14.6□□□□□ -0.07
Ccdc40-201ENSMUST00000035935 Myt1Q8CFC2 1127 aa14.57□□□□□ -0.08
Ccdc40-201ENSMUST00000035935 Kdm5dQ62240 1548 aa14.57□□□□□ -0.08
Ccdc40-201ENSMUST00000035935 Golga3P55937 1487 aa14.55□□□□□ -0.08
Ccdc40-201ENSMUST00000035935 Neurod1Q60867 357 aa14.55□□□□□ -0.08
Ccdc40-201ENSMUST00000035935 Lmod2Q3UHZ5 550 aa14.51□□□□□ -0.09
Ccdc40-201ENSMUST00000035935 Ccer2J3QPU5 274 aa14.49□□□□□ -0.09
Ccdc40-201ENSMUST00000035935 Ppargc1bQ8VHJ7 1014 aa14.45□□□□□ -0.1
Ccdc40-201ENSMUST00000035935 NeflP08551 543 aa14.43□□□□□ -0.1
Ccdc40-201ENSMUST00000035935 Os9Q8K2C7 672 aa14.39□□□□□ -0.11
Ccdc40-201ENSMUST00000035935 Ubl4bQ9CQ84 188 aa14.37□□□□□ -0.11
Ccdc40-201ENSMUST00000035935 Crybg2B7ZCC2 1516 aa14.37□□□□□ -0.11
Ccdc40-201ENSMUST00000035935 Eif5bQ05D44 1216 aaKnown RBP14.34□□□□□ -0.11
Ccdc40-201ENSMUST00000035935 Hdac5Q9Z2V6 1113 aa14.34□□□□□ -0.11
Ccdc40-201ENSMUST00000035935 Rsf1E9PWW9 1441 aaKnown RBP14.33□□□□□ -0.11
Ccdc40-201ENSMUST00000035935 Rtl5Q5DTT4 599 aa14.32□□□□□ -0.12
Ccdc40-201ENSMUST00000035935 Sall2Q9QX96 1004 aa14.31□□□□□ -0.12
Ccdc40-201ENSMUST00000035935 Setd5Q5XJV7 1441 aa14.26□□□□□ -0.13
Ccdc40-201ENSMUST00000035935 Anks4bQ8K3X6 423 aa14.26□□□□□ -0.13
Ccdc40-201ENSMUST00000035935 BlmO88700 1416 aa14.25□□□□□ -0.13
Ccdc40-201ENSMUST00000035935 Eid3Q3V124 375 aa14.25□□□□□ -0.13
Ccdc40-201ENSMUST00000035935 Ercc6F8VPZ5 1481 aa14.25□□□□□ -0.13
Ccdc40-201ENSMUST00000035935 Sycp2Q9CUU3 1500 aa14.24□□□□□ -0.13
Ccdc40-201ENSMUST00000035935 Kif15Q6P9L6 1387 aa14.23□□□□□ -0.13
Ccdc40-201ENSMUST00000035935 Ccdc18Q640L5 1455 aa14.21□□□□□ -0.13
Ccdc40-201ENSMUST00000035935 Eea1Q8BL66 1411 aa14.19□□□□□ -0.14
Ccdc40-201ENSMUST00000035935 Hnrnpul2Q00PI9 745 aaKnown RBP14.18□□□□□ -0.14
Ccdc40-201ENSMUST00000035935 Anp32aO35381 247 aa14.17□□□□□ -0.14
Ccdc40-201ENSMUST00000035935 Amer1Q7TS75 1132 aa14.17□□□□□ -0.14
Ccdc40-201ENSMUST00000035935 Zbtb7cQ8VCZ7 619 aa14.14□□□□□ -0.15
Ccdc40-201ENSMUST00000035935 Fmn1Q05860 1466 aa14.14□□□□□ -0.15
Ccdc40-201ENSMUST00000035935 Pds5bQ4VA53 1446 aaKnown RBP14.13□□□□□ -0.15
Ccdc40-201ENSMUST00000035935 Smarca2Q6DIC0 1577 aa14.11□□□□□ -0.15
Ccdc40-201ENSMUST00000035935 Clstn2Q9ER65 966 aa14.09□□□□□ -0.15
Ccdc40-201ENSMUST00000035935 Ccdc88bQ4QRL3 1481 aa14.07□□□□□ -0.16
Ccdc40-201ENSMUST00000035935 Aplp2Q06335 707 aa14.06□□□□□ -0.16
Ccdc40-201ENSMUST00000035935 ScribQ80U72 1612 aa14.06□□□□□ -0.16
Ccdc40-201ENSMUST00000035935 4933416C03RikQ3V063 378 aa14.05□□□□□ -0.16
Ccdc40-201ENSMUST00000035935 Chic2Q9D9G3 165 aa14.05□□□□□ -0.16
Ccdc40-201ENSMUST00000035935 Mapk8ip2Q9ERE9 830 aa14.03□□□□□ -0.16
Ccdc40-201ENSMUST00000035935 CftrP26361 1476 aa14.03□□□□□ -0.16
Ccdc40-201ENSMUST00000035935 Fkbp15Q6P9Q6 1216 aaKnown RBP14.02□□□□□ -0.16
Ccdc40-201ENSMUST00000035935 Erich6D3Z6S9 713 aa14.02□□□□□ -0.16
Ccdc40-201ENSMUST00000035935 Cep162Q6ZQ06 1403 aa14.02□□□□□ -0.17
Ccdc40-201ENSMUST00000035935 Nlrp6Q91WS2 869 aa14.01□□□□□ -0.17
Ccdc40-201ENSMUST00000035935 Upf2A2AT37 1269 aaKnown RBP13.98□□□□□ -0.17
Ccdc40-201ENSMUST00000035935 Mia2Q91ZV0 1396 aa13.98□□□□□ -0.17
Ccdc40-201ENSMUST00000035935 Ifnlr1Q8CGK5 535 aa13.97□□□□□ -0.17
Retrieved 100 of 22,080 RNA–protein pairs in 13.6 ms