RNA–Protein interactions for RNA: ENSMUST00000033012.8

Copb1-201, Transcript of Coatomer subunit beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Copb1, Length 3,346 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1-201ENSMUST00000033012 Rpgrip1Q9EPQ2 1331 aa17.62■□□□□ 0.41
Copb1-201ENSMUST00000033012 Rtl1Q7M732 1744 aa17■□□□□ 0.31
Copb1-201ENSMUST00000033012 Acin1Q9JIX8 1338 aaKnown RBP16.86■□□□□ 0.29
Copb1-201ENSMUST00000033012 Ccdc180J3QNE4 1664 aa16.82■□□□□ 0.28
Copb1-201ENSMUST00000033012 Pcgf6Q99NA9 353 aa16.68■□□□□ 0.26
Copb1-201ENSMUST00000033012 NischQ80TM9 1593 aa16.66■□□□□ 0.26
Copb1-201ENSMUST00000033012 Abcc9P70170 1546 aa16.28■□□□□ 0.2
Copb1-201ENSMUST00000033012 Dcaf1Q80TR8 1506 aa16.23■□□□□ 0.19
Copb1-201ENSMUST00000033012 Trim41Q5NCC3 630 aa16.2■□□□□ 0.18
Copb1-201ENSMUST00000033012 Las1lA2BE28 776 aaKnown RBP16.15■□□□□ 0.18
Copb1-201ENSMUST00000033012 Rhox8Q6VSS7 320 aa16.14■□□□□ 0.17
Copb1-201ENSMUST00000033012 Neurod1Q60867 357 aa16.14■□□□□ 0.17
Copb1-201ENSMUST00000033012 Zcchc6Q5BLK4 1491 aaKnown RBP16.09■□□□□ 0.17
Copb1-201ENSMUST00000033012 Supt5hO55201 1082 aaKnown RBP16.07■□□□□ 0.16
Copb1-201ENSMUST00000033012 Gm35339A0A140LHH9 1649 aa16.06■□□□□ 0.16
Copb1-201ENSMUST00000033012 Myt1Q8CFC2 1127 aa16.04■□□□□ 0.16
Copb1-201ENSMUST00000033012 Ehmt2Q9Z148 1263 aaKnown RBP16.04■□□□□ 0.16
Copb1-201ENSMUST00000033012 CenpbP27790 599 aa15.88■□□□□ 0.13
Copb1-201ENSMUST00000033012 1700123L14RikQ3V2K7 440 aa15.86■□□□□ 0.13
Copb1-201ENSMUST00000033012 HrcG5E8J6 738 aa15.8■□□□□ 0.12
Copb1-201ENSMUST00000033012 Anks4bQ8K3X6 423 aa15.68■□□□□ 0.1
Copb1-201ENSMUST00000033012 DiexfQ8BTT6 772 aaKnown RBP15.67■□□□□ 0.1
Copb1-201ENSMUST00000033012 Abcc8B2RUS7 1588 aa15.6■□□□□ 0.09
Copb1-201ENSMUST00000033012 Csrnp3P59055 597 aa15.59■□□□□ 0.09
Copb1-201ENSMUST00000033012 Aplp2Q06335 707 aa15.55■□□□□ 0.08
Copb1-201ENSMUST00000033012 Bcl11aQ9QYE3 773 aa15.45■□□□□ 0.06
Copb1-201ENSMUST00000033012 Cngb1E1AZ71 1325 aa15.41■□□□□ 0.06
Copb1-201ENSMUST00000033012 Sall2Q9QX96 1004 aa15.38■□□□□ 0.05
Copb1-201ENSMUST00000033012 Zeb1Q64318 1117 aa15.35■□□□□ 0.05
Copb1-201ENSMUST00000033012 NefmP08553 848 aa15.32■□□□□ 0.04
Copb1-201ENSMUST00000033012 Cdk11bP24788 784 aaKnown RBP15.13■□□□□ 0.01
Copb1-201ENSMUST00000033012 Cep164Q5DU05 1446 aa15.1■□□□□ 0.01
Copb1-201ENSMUST00000033012 Nop58Q6DFW4 536 aaKnown RBP15.05■□□□□ -0
Copb1-201ENSMUST00000033012 PrkcshO08795 521 aa15□□□□□ -0.01
Copb1-201ENSMUST00000033012 Mier1Q5UAK0 511 aa15□□□□□ -0.01
Copb1-201ENSMUST00000033012 Gm38655A0A286YDK6 273 aa15□□□□□ -0.01
Copb1-201ENSMUST00000033012 Fam71e1A1L3C1 212 aa14.94□□□□□ -0.02
Copb1-201ENSMUST00000033012 ClspnQ80YR7 1315 aa14.93□□□□□ -0.02
Copb1-201ENSMUST00000033012 Aebp2Q9Z248 504 aaKnown RBP14.88□□□□□ -0.03
Copb1-201ENSMUST00000033012 Ccdc136Q3TVA9 1136 aa14.87□□□□□ -0.03
Copb1-201ENSMUST00000033012 Wdr66E9Q743 1299 aa14.84□□□□□ -0.03
Copb1-201ENSMUST00000033012 Amer1Q7TS75 1132 aa14.8□□□□□ -0.04
Copb1-201ENSMUST00000033012 Ifnlr1Q8CGK5 535 aa14.8□□□□□ -0.04
Copb1-201ENSMUST00000033012 Tnnt3Q9QZ47 272 aa14.69□□□□□ -0.06
Copb1-201ENSMUST00000033012 Rb1cc1Q9ESK9 1588 aa14.68□□□□□ -0.06
Copb1-201ENSMUST00000033012 Rtl5Q5DTT4 599 aa14.68□□□□□ -0.06
Copb1-201ENSMUST00000033012 Mapk8ip2Q9ERE9 830 aa14.68□□□□□ -0.06
Copb1-201ENSMUST00000033012 SafbD3YXK2 937 aaKnown RBP14.65□□□□□ -0.06
Copb1-201ENSMUST00000033012 Hnrnpul2Q00PI9 745 aaKnown RBP14.64□□□□□ -0.07
Copb1-201ENSMUST00000033012 Anp32aO35381 247 aa14.57□□□□□ -0.08
Copb1-201ENSMUST00000033012 Baz1aO88379 1555 aa14.55□□□□□ -0.08
Copb1-201ENSMUST00000033012 Ppargc1bQ8VHJ7 1014 aa14.54□□□□□ -0.08
Copb1-201ENSMUST00000033012 Rsf1E9PWW9 1441 aaKnown RBP14.53□□□□□ -0.08
Copb1-201ENSMUST00000033012 Hdac5Q9Z2V6 1113 aa14.48□□□□□ -0.09
Copb1-201ENSMUST00000033012 TonslQ6NZL6 1363 aa14.46□□□□□ -0.09
Copb1-201ENSMUST00000033012 Pelp1Q9DBD5 1123 aaKnown RBP14.44□□□□□ -0.1
Copb1-201ENSMUST00000033012 Gab3Q8BSM5 595 aa14.42□□□□□ -0.1
Copb1-201ENSMUST00000033012 Chic1Q8CBW7 227 aa14.42□□□□□ -0.1
Copb1-201ENSMUST00000033012 Fgd1P52734 960 aa14.36□□□□□ -0.11
Copb1-201ENSMUST00000033012 Nolc1E9Q5C9 702 aaKnown RBP14.33□□□□□ -0.12
Copb1-201ENSMUST00000033012 Smarca2Q6DIC0 1577 aa14.33□□□□□ -0.12
Copb1-201ENSMUST00000033012 UbtfP25976 765 aaKnown RBP14.32□□□□□ -0.12
Copb1-201ENSMUST00000033012 Znf710Q3U288 666 aa14.31□□□□□ -0.12
Copb1-201ENSMUST00000033012 NrdcQ8BHG1 1161 aa14.3□□□□□ -0.12
Copb1-201ENSMUST00000033012 Ccdc88bQ4QRL3 1481 aa14.29□□□□□ -0.12
Copb1-201ENSMUST00000033012 Supt16hQ920B9 1047 aa14.28□□□□□ -0.12
Copb1-201ENSMUST00000033012 Ap3b1Q9Z1T1 1105 aa14.28□□□□□ -0.12
Copb1-201ENSMUST00000033012 Upf2A2AT37 1269 aaKnown RBP14.23□□□□□ -0.13
Copb1-201ENSMUST00000033012 Pknox2Q8BG99 474 aa14.23□□□□□ -0.13
Copb1-201ENSMUST00000033012 Gtf3c3Q3TMP1 882 aa14.22□□□□□ -0.13
Copb1-201ENSMUST00000033012 Stra8P70278 393 aa14.2□□□□□ -0.14
Copb1-201ENSMUST00000033012 Ccdc9Q8VC31 543 aaKnown RBP14.2□□□□□ -0.14
Copb1-201ENSMUST00000033012 Calr4Q3TQS0 420 aa14.19□□□□□ -0.14
Copb1-201ENSMUST00000033012 NacadQ5SWP3 1504 aa14.15□□□□□ -0.14
Copb1-201ENSMUST00000033012 ScribQ80U72 1612 aa14.13□□□□□ -0.15
Copb1-201ENSMUST00000033012 Ccdc27Q3V036 639 aa14.13□□□□□ -0.15
Copb1-201ENSMUST00000033012 Rpap1Q80TE0 1409 aa14.13□□□□□ -0.15
Copb1-201ENSMUST00000033012 Golga3P55937 1487 aa14.12□□□□□ -0.15
Copb1-201ENSMUST00000033012 Ncapd3Q6ZQK0 1506 aa14.11□□□□□ -0.15
Copb1-201ENSMUST00000033012 Plcd4Q8K3R3 807 aa14.11□□□□□ -0.15
Copb1-201ENSMUST00000033012 Crybg2B7ZCC2 1516 aa14.11□□□□□ -0.15
Copb1-201ENSMUST00000033012 Irx3P81067 507 aa14.1□□□□□ -0.15
Copb1-201ENSMUST00000033012 Il27Q8K3I6 234 aa14.1□□□□□ -0.15
Copb1-201ENSMUST00000033012 Washc2Q6PGL7 1334 aa14.07□□□□□ -0.16
Copb1-201ENSMUST00000033012 Ttbk1Q6PCN3 1308 aa14.06□□□□□ -0.16
Copb1-201ENSMUST00000033012 Kdm5dQ62240 1548 aa14.04□□□□□ -0.16
Copb1-201ENSMUST00000033012 Rapgef2Q8CHG7 1496 aa14.03□□□□□ -0.16
Copb1-201ENSMUST00000033012 Wdr43Q6ZQL4 677 aaKnown RBP14.01□□□□□ -0.17
Copb1-201ENSMUST00000033012 Ipo4Q8VI75 1082 aa14□□□□□ -0.17
Copb1-201ENSMUST00000033012 Kdm5bQ80Y84 1544 aa13.99□□□□□ -0.17
Copb1-201ENSMUST00000033012 Ppp4r2Q0VGB7 417 aa13.98□□□□□ -0.17
Copb1-201ENSMUST00000033012 Pak3Q61036 559 aa13.97□□□□□ -0.17
Copb1-201ENSMUST00000033012 Brd4Q9ESU6 1400 aaKnown RBP13.96□□□□□ -0.17
Copb1-201ENSMUST00000033012 Liat1Q810M6 228 aa13.96□□□□□ -0.18
Copb1-201ENSMUST00000033012 Egfem1Q8C088 590 aa13.95□□□□□ -0.18
Copb1-201ENSMUST00000033012 Hsp90aa1P07901 733 aaKnown RBP13.93□□□□□ -0.18
Copb1-201ENSMUST00000033012 Top2bQ64511 1612 aa13.91□□□□□ -0.18
Copb1-201ENSMUST00000033012 Ipo9Q91YE6 1041 aa13.87□□□□□ -0.19
Copb1-201ENSMUST00000033012 Cep162Q6ZQ06 1403 aa13.85□□□□□ -0.19
Copb1-201ENSMUST00000033012 Kcnn1Q9EQR3 537 aa13.82□□□□□ -0.2
Retrieved 100 of 22,080 RNA–protein pairs in 9.5 ms