RNA–Protein interactions for RNA: YJL176C

SWI3, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SWI3, Length 2,478 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI3	YJL176C	RGT1	P32862	1170 aa		5.31	□□□□□ -1.56
SWI3	YJL176C	MCR1	P36060	302 aa	Known RBP	5.31	□□□□□ -1.56
SWI3	YJL176C	NDT80	P38830	627 aa		5.31	□□□□□ -1.56
SWI3	YJL176C	CCT3	P39077	534 aa	Known RBP	5.31	□□□□□ -1.56
SWI3	YJL176C	BUD6	P41697	788 aa		5.31	□□□□□ -1.56
SWI3	YJL176C	DUS3	Q06053	668 aa	Known RBP	5.31	□□□□□ -1.56
SWI3	YJL176C	YLR407W	Q06070	228 aa		5.31	□□□□□ -1.56
SWI3	YJL176C	PAH1	P32567	862 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	SHP1	P34223	423 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	PCI8	P40512	444 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	CTF18	P49956	741 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	ASE1	P50275	885 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	LIF1	P53150	421 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	SLD5	Q03406	294 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	BUL2	Q03758	920 aa	Known RBP	5.3	□□□□□ -1.56
SWI3	YJL176C	MYO1	P08964	1928 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	TY1B-A	O13527	1196 aa	Known RBP	5.3	□□□□□ -1.56
SWI3	YJL176C	RPL19A	P0CX82	189 aa	Known RBP	5.3	□□□□□ -1.56
SWI3	YJL176C	RPL19B	P0CX83	189 aa	Predicted RBP	5.3	□□□□□ -1.56
SWI3	YJL176C	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.3	□□□□□ -1.56	not detected
SWI3	YJL176C	CBP3	P21560	335 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	SAS3	P34218	831 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	PAN5	P38787	379 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	ULP1	Q02724	621 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	ERP3	Q12403	225 aa		5.3	□□□□□ -1.56
SWI3	YJL176C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	5.29	□□□□□ -1.56	not detected
SWI3	YJL176C	UGA4	P32837	571 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	VPS29	P38759	282 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	ENT3	P47160	408 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	YGL138C	P53122	345 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	NAF1	P53919	492 aa	Known RBP	5.29	□□□□□ -1.56
SWI3	YJL176C	CEX1	Q12453	761 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	ASF1	P32447	279 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	SEC8	P32855	1065 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	TTI1	P36097	1038 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	VPS53	P47061	822 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	GIS4	Q04233	774 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	VPS20	Q04272	221 aa		5.29	□□□□□ -1.56
SWI3	YJL176C	SMD2	Q06217	110 aa	Known RBP	5.29	□□□□□ -1.56
SWI3	YJL176C	ISA1	Q07821	250 aa	Predicted RBP	5.29	□□□□□ -1.56
SWI3	YJL176C	MSC6	Q08818	692 aa	Known RBP	5.29	□□□□□ -1.56
SWI3	YJL176C	SES1	P07284	462 aa	Known RBP	5.28	□□□□□ -1.56
SWI3	YJL176C	TKL1	P23254	680 aa	Known RBP	5.28	□□□□□ -1.56
SWI3	YJL176C	MCM4	P30665	933 aa	Known RBP	5.28	□□□□□ -1.56
SWI3	YJL176C	SUL1	P38359	859 aa		5.28	□□□□□ -1.56
SWI3	YJL176C	BNI5	P53890	448 aa	Known RBP	5.28	□□□□□ -1.56
SWI3	YJL176C	ELG1	Q12050	791 aa		5.28	□□□□□ -1.56
SWI3	YJL176C	TFC4	P33339	1025 aa		5.28	□□□□□ -1.56
SWI3	YJL176C	REG2	P38232	338 aa		5.28	□□□□□ -1.56
SWI3	YJL176C	OXR1	Q08952	273 aa		5.28	□□□□□ -1.56
SWI3	YJL176C	YOR131C	Q12486	218 aa		5.28	□□□□□ -1.56
SWI3	YJL176C	HSP82	P02829	709 aa	Known RBP	5.27	□□□□□ -1.57
SWI3	YJL176C	SRO9	P25567	434 aa	Known RBP	5.27	□□□□□ -1.57
SWI3	YJL176C	YJR107W	P47145	328 aa		5.27	□□□□□ -1.57
SWI3	YJL176C	HUL5	P53119	910 aa		5.27	□□□□□ -1.57
SWI3	YJL176C	VPS62	P53285	467 aa		5.27	□□□□□ -1.57
SWI3	YJL176C	BRE5	P53741	515 aa	Known RBP	5.27	□□□□□ -1.57
SWI3	YJL176C	PTA1	Q01329	785 aa	Predicted RBP	5.27	□□□□□ -1.57
SWI3	YJL176C	OYE2	Q03558	400 aa	Known RBP	5.27	□□□□□ -1.57
SWI3	YJL176C	CSM3	Q04659	317 aa		5.27	□□□□□ -1.57
SWI3	YJL176C	CPA2	P03965	1118 aa	Known RBP	5.26	□□□□□ -1.57
SWI3	YJL176C	CDC6	P09119	513 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	PAM1	P37304	830 aa	Known RBP	5.26	□□□□□ -1.57
SWI3	YJL176C	NPA3	P47122	385 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	RET3	P53600	189 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	DSE4	P53753	1117 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	YLR326W	Q06170	240 aa	Known RBP	5.26	□□□□□ -1.57
SWI3	YJL176C	YPL150W	Q12152	901 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	GET3	Q12154	354 aa	Known RBP	5.26	□□□□□ -1.57
SWI3	YJL176C	SUT2	Q12286	268 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	TRM11	Q12463	433 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	VPS1	P21576	704 aa	Known RBP	5.26	□□□□□ -1.57
SWI3	YJL176C	YUR1	P26725	428 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	TIM23	P32897	222 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	DBP7	P36120	742 aa	Known RBP	5.26	□□□□□ -1.57
SWI3	YJL176C	LDH1	P38139	375 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	RFC5	P38251	354 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	PEX14	P53112	341 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	YGL039W	P53183	348 aa	Known RBP	5.26	□□□□□ -1.57
SWI3	YJL176C	TIP41	Q12199	356 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	ARP6	Q12509	438 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	NBL1	Q3E7Y6	73 aa		5.26	□□□□□ -1.57
SWI3	YJL176C	PCT1	P13259	424 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	THR4	P16120	514 aa	Known RBP	5.25	□□□□□ -1.57
SWI3	YJL176C	CLB5	P30283	435 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	AIM21	P40563	679 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	YGR273C	P53329	174 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	YMR321C	Q04898	105 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	PIB1	Q06651	286 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	PDC1	P06169	563 aa	Known RBP	5.25	□□□□□ -1.57
SWI3	YJL176C	BIK1	P11709	440 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	DBP1	P24784	617 aa	Known RBP	5.25	□□□□□ -1.57
SWI3	YJL176C	BCS1	P32839	456 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	PRX1	P34227	261 aa	Known RBP	5.25	□□□□□ -1.57
SWI3	YJL176C	GPT2	P36148	743 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	ISW1	P38144	1129 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	CIT3	P43635	486 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	PIL1	P53252	339 aa	Known RBP	5.25	□□□□□ -1.57
SWI3	YJL176C	FAR11	P53917	953 aa		5.25	□□□□□ -1.57
SWI3	YJL176C	ORC4	P54791	529 aa		5.25	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms