RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	YML002W	P0CF17	737 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	BEM3	P32873	1128 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	XRS2	P33301	854 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	TRM2	P33753	639 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	MET1	P36150	593 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	PES4	P39684	611 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	YGR237C	P50089	785 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	ARI1	P53111	347 aa	Known RBP	3.99	□□□□□ -1.77
SSM4	YIL030C	NOP8	Q08287	484 aa	Predicted RBP	3.99	□□□□□ -1.77
SSM4	YIL030C	NOB1	Q08444	459 aa	Known RBP	3.99	□□□□□ -1.77
SSM4	YIL030C	CEX1	Q12453	761 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	TCB1	Q12466	1186 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	NOT5	Q12514	560 aa	Predicted RBP	3.99	□□□□□ -1.77
SSM4	YIL030C	MIP1	P15801	1254 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	VPS1	P21576	704 aa	Known RBP	3.99	□□□□□ -1.77
SSM4	YIL030C	SPB4	P25808	606 aa	Predicted RBP	3.99	□□□□□ -1.77
SSM4	YIL030C	CDC11	P32458	415 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	MRD1	Q06106	887 aa	Known RBP	3.99	□□□□□ -1.77
SSM4	YIL030C	GAL11	P19659	1081 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	RER2	P35196	286 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	RXT2	P38255	430 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	YJL171C	P46992	396 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	SEC5	P89102	971 aa		3.99	□□□□□ -1.77
SSM4	YIL030C	SNX3	Q08826	162 aa	Known RBP	3.99	□□□□□ -1.77
SSM4	YIL030C	ERG11	P10614	530 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	UGA2	P38067	497 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	ARP5	P53946	755 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	FPR4	Q06205	392 aa	Predicted RBP	3.98	□□□□□ -1.77
SSM4	YIL030C	MMR1	Q06324	491 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	COQ1	P18900	473 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	RFC5	P38251	354 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	TDA9	Q04545	1251 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	ALE1	Q08548	619 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	NYV1	Q12255	253 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	HEM15	P16622	393 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	SFL1	P20134	766 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	GRX1	P25373	110 aa	Known RBP	3.98	□□□□□ -1.77
SSM4	YIL030C	CTM1	P38818	585 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	SMF1	P38925	575 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	PCI8	P40512	444 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	ERV41	Q04651	352 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	CMS1	Q07897	291 aa	Known RBP	3.98	□□□□□ -1.77
SSM4	YIL030C	TLG2	Q08144	397 aa		3.98	□□□□□ -1.77
SSM4	YIL030C	RAD51	P25454	400 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	SEC9	P40357	651 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	YIL001W	P40560	513 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	VPS70	P47161	811 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	YIG1	Q08956	461 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	TFC8	Q12308	588 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	SUP45	P12385	437 aa	Known RBP	3.97	□□□□□ -1.77
SSM4	YIL030C	PMC1	P38929	1173 aa	Predicted RBP	3.97	□□□□□ -1.77
SSM4	YIL030C	NUP82	P40368	713 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	NOP15	P53927	220 aa	Predicted RBP	3.97	□□□□□ -1.77
SSM4	YIL030C	ADE12	P80210	433 aa	Known RBP	3.97	□□□□□ -1.77
SSM4	YIL030C	RMT2	Q03305	412 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	UTP13	Q05946	817 aa	Known RBP	3.97	□□□□□ -1.77
SSM4	YIL030C	YOR111W	Q99210	232 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	STF2	P16965	84 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	STO1	P34160	861 aa	Known RBP	3.97	□□□□□ -1.77
SSM4	YIL030C	BEM4	P39011	633 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	PXR1	P53335	271 aa	Predicted RBP	3.97	□□□□□ -1.77
SSM4	YIL030C	ESBP6	P53918	673 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	YNL040W	P53960	456 aa	Predicted RBP	3.97	□□□□□ -1.77
SSM4	YIL030C	YMR187C	Q03236	431 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	TAF9	Q05027	157 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	NCB2	Q92317	146 aa		3.97	□□□□□ -1.77
SSM4	YIL030C	SEC65	P29478	273 aa		3.96	□□□□□ -1.77
SSM4	YIL030C	RAM2	P29703	316 aa		3.96	□□□□□ -1.77
SSM4	YIL030C	DEP1	P31385	405 aa		3.96	□□□□□ -1.77
SSM4	YIL030C	CCT3	P39077	534 aa	Known RBP	3.96	□□□□□ -1.77
SSM4	YIL030C	TMA22	P47089	198 aa	Predicted RBP	3.96	□□□□□ -1.77
SSM4	YIL030C	ATG23	Q06671	453 aa		3.96	□□□□□ -1.77
SSM4	YIL030C	NCA2	Q12374	616 aa		3.96	□□□□□ -1.77
SSM4	YIL030C	TOM70	P07213	617 aa	Known RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	LIN1	P38852	340 aa	Predicted RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	REV7	P38927	245 aa		3.96	□□□□□ -1.78
SSM4	YIL030C	TIF4632	P39936	914 aa	Known RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	BIR1	P47134	954 aa		3.96	□□□□□ -1.78
SSM4	YIL030C	RPS15	Q01855	142 aa	Known RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	EBS1	Q03466	884 aa	Known RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	ECI1	Q05871	280 aa		3.96	□□□□□ -1.78
SSM4	YIL030C	RRP15	Q06511	250 aa	Predicted RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	TAF10	Q12030	206 aa		3.96	□□□□□ -1.78
SSM4	YIL030C	YAH1	Q12184	172 aa	Known RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	ILV2	P07342	687 aa	Known RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	LCB1	P25045	558 aa	Known RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	ECM32	P32644	1121 aa	Known RBP	3.96	□□□□□ -1.78
SSM4	YIL030C	YET1	P35723	206 aa		3.96	□□□□□ -1.78
SSM4	YIL030C	CDC27	P38042	758 aa		3.96	□□□□□ -1.78
SSM4	YIL030C	NUT1	P53114	1132 aa		3.96	□□□□□ -1.78
SSM4	YIL030C	YDR338C	Q05497	695 aa		3.96	□□□□□ -1.78
SSM4	YIL030C	MRP8	P35719	219 aa		3.95	□□□□□ -1.78
SSM4	YIL030C	THI12	P42883	340 aa		3.95	□□□□□ -1.78
SSM4	YIL030C	THI5	P43534	340 aa		3.95	□□□□□ -1.78
SSM4	YIL030C	THI11	P47183	340 aa		3.95	□□□□□ -1.78
SSM4	YIL030C	THI13	Q07748	340 aa		3.95	□□□□□ -1.78
SSM4	YIL030C	SNA3	P14359	133 aa		3.95	□□□□□ -1.78
SSM4	YIL030C	PAP1	P29468	568 aa	Known RBP	3.95	□□□□□ -1.78
SSM4	YIL030C	AFG2	P32794	780 aa		3.95	□□□□□ -1.78
SSM4	YIL030C	RPN10	P38886	268 aa	Known RBP	3.95	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms