RNA–Protein interactions for RNA: YGR134W

CAF130, Transcript of Subunit of the CCR4-NOT transcriptional regulatory complex, yeast

Gene CAF130, Length 3,369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF130	YGR134W	PEX14	P53112	341 aa		4.12	□□□□□ -1.75
CAF130	YGR134W	CTF4	Q01454	927 aa		4.12	□□□□□ -1.75
CAF130	YGR134W	DAL4	Q04895	635 aa		4.12	□□□□□ -1.75
CAF130	YGR134W	ISR1	Q06098	443 aa	Known RBP	4.12	□□□□□ -1.75
CAF130	YGR134W	INP54	Q08227	384 aa	Known RBP	4.12	□□□□□ -1.75
CAF130	YGR134W	STU1	P38198	1513 aa		4.12	□□□□□ -1.75
CAF130	YGR134W	RPS6A	P0CX37	236 aa	Known RBP	4.12	□□□□□ -1.75
CAF130	YGR134W	RPS6B	P0CX38	236 aa	Predicted RBP	4.12	□□□□□ -1.75
CAF130	YGR134W	TFC4	P33339	1025 aa		4.12	□□□□□ -1.75
CAF130	YGR134W	NPL4	P33755	580 aa		4.12	□□□□□ -1.75
CAF130	YGR134W	YBR238C	P38330	731 aa	Known RBP	4.12	□□□□□ -1.75
CAF130	YGR134W	PBP1	P53297	722 aa	Known RBP	4.12	□□□□□ -1.75
CAF130	YGR134W	KRE33	P53914	1056 aa	Known RBP	4.12	□□□□□ -1.75
CAF130	YGR134W	MSH6	Q03834	1242 aa		4.12	□□□□□ -1.75
CAF130	YGR134W	NOC3	Q07896	663 aa	Predicted RBP	4.12	□□□□□ -1.75
CAF130	YGR134W	REC8	Q12188	680 aa		4.12	□□□□□ -1.75
CAF130	YGR134W	SPT2	P06843	333 aa	Predicted RBP	4.11	□□□□□ -1.75
CAF130	YGR134W	TOP3	P13099	656 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	KTR4	P38131	464 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	DAS1	P47005	663 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
CAF130	YGR134W	GRC3	Q07845	632 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	MPC54	Q08550	464 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	TIF6	Q12522	245 aa	Known RBP	4.11	□□□□□ -1.75
CAF130	YGR134W	TRP2	P00899	507 aa	Known RBP	4.11	□□□□□ -1.75
CAF130	YGR134W	RER2	P35196	286 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	RRF1	P38771	230 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	NTA1	P40354	457 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	YCS4	Q06156	1176 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	ILS1	P09436	1072 aa	Known RBP	4.11	□□□□□ -1.75
CAF130	YGR134W	AFR1	P33304	620 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	VPS8	P39702	1274 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	PAC1	P39946	494 aa	Known RBP	4.11	□□□□□ -1.75
CAF130	YGR134W	YEL023C	P39992	682 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	HOS2	P53096	452 aa	Predicted RBP	4.11	□□□□□ -1.75
CAF130	YGR134W	ALO1	P54783	526 aa	Known RBP	4.11	□□□□□ -1.75
CAF130	YGR134W	SSL2	Q00578	843 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	YKU80	Q04437	629 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	HDA2	Q06629	674 aa		4.11	□□□□□ -1.75
CAF130	YGR134W	ECM5	Q03214	1411 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	HSP60	P19882	572 aa	Known RBP	4.1	□□□□□ -1.75
CAF130	YGR134W	DCW1	P36091	449 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	YAP1801	P38856	637 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	MEP1	P40260	492 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	ATG3	P40344	310 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	MRPS18	P42847	217 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	MEP3	P53390	489 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	TAF11	Q04226	346 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	VMS1	Q04311	632 aa	Known RBP	4.1	□□□□□ -1.75
CAF130	YGR134W	SEC23	P15303	768 aa	Known RBP	4.1	□□□□□ -1.75
CAF130	YGR134W	VMA3	P25515	160 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	NUD1	P32336	851 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	SWI3	P32591	825 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	ERR3	P42222	437 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	ISM1	P48526	1002 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	YNL165W	P53891	406 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	SSH4	P32343	579 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	MTR4	P47047	1073 aa	Known RBP	4.1	□□□□□ -1.75
CAF130	YGR134W	HSV2	P50079	448 aa	Predicted RBP	4.1	□□□□□ -1.75
CAF130	YGR134W	ALR1	Q08269	859 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	HBN1	Q96VH4	193 aa		4.1	□□□□□ -1.75
CAF130	YGR134W	UFD4	P33202	1483 aa		4.09	□□□□□ -1.75
CAF130	YGR134W	SPO16	P17122	198 aa		4.09	□□□□□ -1.75
CAF130	YGR134W	MIH1	P23748	554 aa		4.09	□□□□□ -1.75
CAF130	YGR134W	MNT3	P40549	630 aa		4.09	□□□□□ -1.75
CAF130	YGR134W	HXT8	P40886	569 aa		4.09	□□□□□ -1.75
CAF130	YGR134W	CEG1	Q01159	459 aa	Predicted RBP	4.09	□□□□□ -1.75
CAF130	YGR134W	NOG1	Q02892	647 aa	Known RBP	4.09	□□□□□ -1.75
CAF130	YGR134W	HOT1	Q03213	719 aa		4.09	□□□□□ -1.75
CAF130	YGR134W	DPL1	Q05567	589 aa		4.09	□□□□□ -1.75
CAF130	YGR134W	MYO4	P32492	1471 aa		4.09	□□□□□ -1.75
CAF130	YGR134W	YPK9	Q12697	1472 aa		4.09	□□□□□ -1.75
CAF130	YGR134W	PRP5	P21372	849 aa	Predicted RBP	4.09	□□□□□ -1.76
CAF130	YGR134W	KRR1	P25586	316 aa	Predicted RBP	4.09	□□□□□ -1.76
CAF130	YGR134W	PTP2	P29461	750 aa		4.09	□□□□□ -1.76
CAF130	YGR134W	ABD1	P32783	436 aa	Predicted RBP	4.09	□□□□□ -1.76
CAF130	YGR134W	ACA1	P39970	489 aa		4.09	□□□□□ -1.76
CAF130	YGR134W	TPA1	P40032	644 aa	Known RBP	4.09	□□□□□ -1.76
CAF130	YGR134W	DUG1	P43616	481 aa	Known RBP	4.09	□□□□□ -1.76
CAF130	YGR134W	SGM1	P47166	707 aa		4.09	□□□□□ -1.76
CAF130	YGR134W	CWC24	P53769	259 aa		4.09	□□□□□ -1.76
CAF130	YGR134W	SNP1	Q00916	300 aa	Predicted RBP	4.09	□□□□□ -1.76
CAF130	YGR134W	ARA2	Q04212	335 aa		4.09	□□□□□ -1.76
CAF130	YGR134W	CLF1	Q12309	687 aa	Predicted RBP	4.09	□□□□□ -1.76
CAF130	YGR134W	MET8	P15807	274 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	SBA1	P28707	216 aa	Known RBP	4.08	□□□□□ -1.76
CAF130	YGR134W	SCT1	P32784	759 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	NUP120	P35729	1037 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	YHL008C	P38750	627 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	CIC1	P38779	376 aa	Known RBP	4.08	□□□□□ -1.76
CAF130	YGR134W	PSR2	Q07949	397 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	RPC31	P17890	251 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	MSN1	P22148	382 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	RAD53	P22216	821 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	HEM12	P32347	362 aa	Predicted RBP	4.08	□□□□□ -1.76
CAF130	YGR134W	DHR2	P36009	735 aa	Predicted RBP	4.08	□□□□□ -1.76
CAF130	YGR134W	BCD1	P38772	366 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	XDJ1	P39102	459 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	TAF1	P46677	1066 aa		4.08	□□□□□ -1.76
CAF130	YGR134W	MET13	P53128	600 aa		4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 31.9 ms