RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W IQG1Q12280 1495 aa3.6□□□□□ -1.83
USE1YGL098W HAP1P0CE41 1502 aa3.6□□□□□ -1.83
USE1YGL098W MCM1P11746 286 aa3.6□□□□□ -1.83
USE1YGL098W ATE1P16639 503 aa3.6□□□□□ -1.83
USE1YGL098W CDC48P25694 835 aaKnown RBP3.6□□□□□ -1.83
USE1YGL098W DPB3P27344 201 aa3.6□□□□□ -1.83
USE1YGL098W BUD14P27637 709 aa3.6□□□□□ -1.83
USE1YGL098W RAD16P31244 790 aa3.6□□□□□ -1.83
USE1YGL098W YEL043WP32618 956 aa3.6□□□□□ -1.83
USE1YGL098W RAD5P32849 1169 aaPredicted RBP3.6□□□□□ -1.83
USE1YGL098W LAM1P38851 1228 aa3.6□□□□□ -1.83
USE1YGL098W CCT4P39078 528 aaKnown RBP3.6□□□□□ -1.83
USE1YGL098W CAJ1P39101 391 aa3.6□□□□□ -1.83
USE1YGL098W CEM1P39525 442 aa3.6□□□□□ -1.83
USE1YGL098W LSB6P42951 607 aa3.6□□□□□ -1.83
USE1YGL098W MRX12P47084 519 aa3.6□□□□□ -1.83
USE1YGL098W ALD2P47771 506 aa3.6□□□□□ -1.83
USE1YGL098W CCM1P48237 864 aaPredicted RBP3.6□□□□□ -1.83
USE1YGL098W BTN2P53286 410 aa3.6□□□□□ -1.83
USE1YGL098W MAL13P53338 473 aa3.6□□□□□ -1.83
USE1YGL098W DSL1P53847 754 aa3.6□□□□□ -1.83
USE1YGL098W RIA1P53893 1110 aa3.6□□□□□ -1.83
USE1YGL098W RCF1Q03713 159 aa3.6□□□□□ -1.83
USE1YGL098W YDR338CQ05497 695 aa3.6□□□□□ -1.83
USE1YGL098W SGD1Q06132 899 aa3.6□□□□□ -1.83
USE1YGL098W ABP140Q08641 628 aaKnown RBP3.6□□□□□ -1.83
USE1YGL098W CHS5Q12114 671 aaKnown RBP3.6□□□□□ -1.83
USE1YGL098W SAC3P46674 1301 aa3.6□□□□□ -1.83
USE1YGL098W PSK1P31374 1356 aa3.6□□□□□ -1.83
USE1YGL098W YSP2Q06681 1438 aa3.6□□□□□ -1.83
USE1YGL098W JIP3O13555 125 aa3.59□□□□□ -1.83
USE1YGL098W YMR085WP0CF18 432 aa3.59□□□□□ -1.83
USE1YGL098W GCD2P12754 651 aaPredicted RBP3.59□□□□□ -1.83
USE1YGL098W KRS1P15180 591 aaKnown RBP3.59□□□□□ -1.83
USE1YGL098W RPO26P20435 155 aa3.59□□□□□ -1.83
USE1YGL098W SPE2P21182 396 aa3.59□□□□□ -1.83
USE1YGL098W RPL5P26321 297 aaKnown RBP3.59□□□□□ -1.83
USE1YGL098W MET4P32389 672 aa3.59□□□□□ -1.83
USE1YGL098W KAR9P32526 644 aa3.59□□□□□ -1.83
USE1YGL098W NFU1P32860 256 aa3.59□□□□□ -1.83
USE1YGL098W MKS1P34072 584 aa3.59□□□□□ -1.83
USE1YGL098W LHS1P36016 881 aa3.59□□□□□ -1.83
USE1YGL098W MUD2P36084 527 aaKnown RBP3.59□□□□□ -1.83
USE1YGL098W BRN1P38170 754 aa3.59□□□□□ -1.83
USE1YGL098W YSW1P38280 609 aa3.59□□□□□ -1.83
USE1YGL098W LIN1P38852 340 aaPredicted RBP3.59□□□□□ -1.83
USE1YGL098W BEM4P39011 633 aa3.59□□□□□ -1.83
USE1YGL098W VPS8P39702 1274 aa3.59□□□□□ -1.83
USE1YGL098W FIG4P42837 879 aa3.59□□□□□ -1.83
USE1YGL098W OSW7P43611 510 aa3.59□□□□□ -1.83
USE1YGL098W SUM1P46676 1062 aa3.59□□□□□ -1.83
USE1YGL098W YJL007CP47080 104 aa3.59□□□□□ -1.83
USE1YGL098W APT1P49435 187 aaKnown RBP3.59□□□□□ -1.83
USE1YGL098W LSG1P53145 640 aaKnown RBP3.59□□□□□ -1.83
USE1YGL098W YNL247WP53852 767 aaKnown RBP3.59□□□□□ -1.83
USE1YGL098W YNL108CP53929 270 aa3.59□□□□□ -1.83
USE1YGL098W SSL2Q00578 843 aa3.59□□□□□ -1.83
USE1YGL098W SLX4Q12098 748 aa3.59□□□□□ -1.83
USE1YGL098W CFT2Q12102 859 aaPredicted RBP3.59□□□□□ -1.83
USE1YGL098W YDR215CQ12240 137 aa3.59□□□□□ -1.83
USE1YGL098W LSO1Q3E827 93 aa3.59□□□□□ -1.83
USE1YGL098W VPS5Q92331 675 aa3.59□□□□□ -1.83
USE1YGL098W PDR11P40550 1411 aa3.59□□□□□ -1.84
USE1YGL098W SUI3P09064 285 aaKnown RBP3.58□□□□□ -1.84
USE1YGL098W TRL1P09880 827 aaKnown RBP3.58□□□□□ -1.84
USE1YGL098W RPL19AP0CX82 189 aaKnown RBP3.58□□□□□ -1.84
USE1YGL098W RPL19BP0CX83 189 aaPredicted RBP3.58□□□□□ -1.84
USE1YGL098W NAT1P12945 854 aaKnown RBP3.58□□□□□ -1.84
USE1YGL098W PMR1P13586 950 aa3.58□□□□□ -1.84
USE1YGL098W TAL1P15019 335 aaKnown RBP3.58□□□□□ -1.84
USE1YGL098W PRP16P15938 1071 aaPredicted RBP3.58□□□□□ -1.84
USE1YGL098W YEF3P16521 1044 aaKnown RBP3.58□□□□□ -1.84
USE1YGL098W TPM1P17536 199 aaKnown RBP3.58□□□□□ -1.84
USE1YGL098W GAL11P19659 1081 aa3.58□□□□□ -1.84
USE1YGL098W UBP1P25037 809 aa3.58□□□□□ -1.84
USE1YGL098W BIO2P32451 375 aa3.58□□□□□ -1.84
USE1YGL098W SEC66P33754 206 aa3.58□□□□□ -1.84
USE1YGL098W PIM1P36775 1133 aa3.58□□□□□ -1.84
USE1YGL098W YBL036CP38197 257 aa3.58□□□□□ -1.84
USE1YGL098W REI1P38344 393 aaPredicted RBP3.58□□□□□ -1.84
USE1YGL098W RRM3P38766 723 aa3.58□□□□□ -1.84
USE1YGL098W SHC1P39000 512 aa3.58□□□□□ -1.84
USE1YGL098W MET10P39692 1035 aa3.58□□□□□ -1.84
USE1YGL098W YIL001WP40560 513 aa3.58□□□□□ -1.84
USE1YGL098W PXA1P41909 870 aa3.58□□□□□ -1.84
USE1YGL098W APL6P46682 809 aa3.58□□□□□ -1.84
USE1YGL098W YJR142WP47173 342 aa3.58□□□□□ -1.84
USE1YGL098W HOT1Q03213 719 aa3.58□□□□□ -1.84
USE1YGL098W KRE28Q04431 385 aa3.58□□□□□ -1.84
USE1YGL098W FAR8Q05040 523 aa3.58□□□□□ -1.84
USE1YGL098W AOS1Q06624 347 aa3.58□□□□□ -1.84
USE1YGL098W SLK19Q08581 821 aaKnown RBP3.58□□□□□ -1.84
USE1YGL098W MCA1Q08601 432 aa3.58□□□□□ -1.84
USE1YGL098W IES3Q12345 250 aa3.58□□□□□ -1.84
USE1YGL098W TRS33Q99394 268 aa3.58□□□□□ -1.84
USE1YGL098W DRS2P39524 1355 aa3.58□□□□□ -1.84
USE1YGL098W RAV1P47104 1357 aa3.58□□□□□ -1.84
USE1YGL098W PRE10P21242 288 aaKnown RBP RIP-Chip data3.57□□□□□ -1.84not detected
USE1YGL098W UBC1P21734 215 aaKnown RBP3.57□□□□□ -1.84
USE1YGL098W PRD1P25375 712 aa3.57□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 122.9 ms