RNA–Protein interactions for RNA: YDL053C

PBP4, Transcript of Pbp1p binding protein, yeast

Gene PBP4, Length 558 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PBP4	YDL053C	NFS1	P25374	497 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	SMY2	P32909	740 aa	Known RBP	4.85	□□□□□ -1.63
PBP4	YDL053C	NNK1	P36003	928 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	KAE1	P36132	386 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	HXT13	P39924	564 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	ALT1	P52893	592 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	HXT17	P53631	564 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	HXT15	P54854	567 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	ROD1	Q02805	837 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	SVF1	Q05515	481 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	LAP2	Q10740	671 aa		4.85	□□□□□ -1.63
PBP4	YDL053C	RPS4A	P0CX35	261 aa	Known RBP	4.84	□□□□□ -1.63
PBP4	YDL053C	RPS4B	P0CX36	261 aa	Known RBP	4.84	□□□□□ -1.63
PBP4	YDL053C	CHS2	P14180	963 aa		4.84	□□□□□ -1.63
PBP4	YDL053C	AFG2	P32794	780 aa		4.84	□□□□□ -1.63
PBP4	YDL053C	DUT1	P33317	147 aa		4.84	□□□□□ -1.63
PBP4	YDL053C	MNR2	P35724	969 aa		4.84	□□□□□ -1.63
PBP4	YDL053C	HSE1	P38753	452 aa		4.84	□□□□□ -1.63
PBP4	YDL053C	MMM1	P41800	426 aa		4.84	□□□□□ -1.63
PBP4	YDL053C	RSA3	Q05942	220 aa	Known RBP	4.84	□□□□□ -1.63
PBP4	YDL053C	JIP5	Q06214	492 aa	Predicted RBP	4.84	□□□□□ -1.63
PBP4	YDL053C	RTT10	Q08924	1013 aa		4.84	□□□□□ -1.63
PBP4	YDL053C	CDC34	P14682	295 aa		4.83	□□□□□ -1.64
PBP4	YDL053C	WHI3	P34761	661 aa	Known RBP	4.83	□□□□□ -1.64
PBP4	YDL053C	ENT3	P47160	408 aa		4.83	□□□□□ -1.64
PBP4	YDL053C	EAR1	Q03212	550 aa		4.83	□□□□□ -1.64
PBP4	YDL053C	YLR257W	Q06146	321 aa	Known RBP	4.83	□□□□□ -1.64
PBP4	YDL053C	RET1	P22276	1149 aa	Known RBP	4.82	□□□□□ -1.64
PBP4	YDL053C	NAP1	P25293	417 aa	Known RBP	4.82	□□□□□ -1.64
PBP4	YDL053C	MKK2	P32491	506 aa		4.82	□□□□□ -1.64
PBP4	YDL053C	CIT3	P43635	486 aa		4.82	□□□□□ -1.64
PBP4	YDL053C	YGR130C	P53278	816 aa		4.82	□□□□□ -1.64
PBP4	YDL053C	RAT1	Q02792	1006 aa	Known RBP	4.82	□□□□□ -1.64
PBP4	YDL053C	GLT1	Q12680	2145 aa	Known RBP	4.82	□□□□□ -1.64
PBP4	YDL053C	TRP3	P00937	484 aa		4.81	□□□□□ -1.64
PBP4	YDL053C	SBP1	P10080	294 aa	Known RBP	4.81	□□□□□ -1.64
PBP4	YDL053C	MSB1	P21339	1137 aa	Known RBP	4.81	□□□□□ -1.64
PBP4	YDL053C	RAD27	P26793	382 aa		4.81	□□□□□ -1.64
PBP4	YDL053C	YKR073C	P36153	106 aa		4.81	□□□□□ -1.64
PBP4	YDL053C	ALG3	P38179	458 aa		4.81	□□□□□ -1.64
PBP4	YDL053C	QNS1	P38795	714 aa	Known RBP	4.81	□□□□□ -1.64
PBP4	YDL053C	NMD3	P38861	518 aa	Known RBP	4.81	□□□□□ -1.64
PBP4	YDL053C	MAD1	P40957	749 aa		4.81	□□□□□ -1.64
PBP4	YDL053C	VPS53	P47061	822 aa		4.81	□□□□□ -1.64
PBP4	YDL053C	VPS16	Q03308	798 aa		4.81	□□□□□ -1.64
PBP4	YDL053C	PUS7	Q08647	676 aa	Known RBP	4.81	□□□□□ -1.64
PBP4	YDL053C	PTC5	Q12511	572 aa		4.81	□□□□□ -1.64
PBP4	YDL053C	CLN2	P20438	545 aa		4.8	□□□□□ -1.64
PBP4	YDL053C	SYP1	P25623	870 aa	Known RBP	4.8	□□□□□ -1.64
PBP4	YDL053C	RER2	P35196	286 aa		4.8	□□□□□ -1.64
PBP4	YDL053C	MET10	P39692	1035 aa		4.8	□□□□□ -1.64
PBP4	YDL053C	NOP7	P53261	605 aa	Known RBP	4.8	□□□□□ -1.64
PBP4	YDL053C	RCM1	P53972	490 aa		4.8	□□□□□ -1.64
PBP4	YDL053C	EEB1	Q02891	456 aa		4.8	□□□□□ -1.64
PBP4	YDL053C	TPP1	Q03796	238 aa		4.8	□□□□□ -1.64
PBP4	YDL053C	TMA46	Q12000	345 aa	Known RBP	4.8	□□□□□ -1.64
PBP4	YDL053C	PIN2	Q12057	282 aa		4.8	□□□□□ -1.64
PBP4	YDL053C	YJL045W	P47052	634 aa		4.79	□□□□□ -1.64
PBP4	YDL053C	ALO1	P54783	526 aa	Known RBP	4.79	□□□□□ -1.64
PBP4	YDL053C	MED7	Q08278	222 aa		4.79	□□□□□ -1.64
PBP4	YDL053C	YOR059C	Q08448	450 aa	Known RBP	4.79	□□□□□ -1.64
PBP4	YDL053C	HRK1	Q08732	759 aa	Known RBP	4.79	□□□□□ -1.64
PBP4	YDL053C	YVC1	Q12324	675 aa		4.79	□□□□□ -1.64
PBP4	YDL053C	CYC7	P00045	113 aa		4.78	□□□□□ -1.64
PBP4	YDL053C	DBP5	P20449	482 aa	Known RBP	4.78	□□□□□ -1.64
PBP4	YDL053C	FAA4	P47912	694 aa	Known RBP	4.78	□□□□□ -1.64
PBP4	YDL053C	MAG2	Q06436	670 aa	Known RBP	4.78	□□□□□ -1.64
PBP4	YDL053C	TRP2	P00899	507 aa	Known RBP	4.77	□□□□□ -1.65
PBP4	YDL053C	GCD1	P09032	578 aa	Predicted RBP	4.77	□□□□□ -1.65
PBP4	YDL053C	KIP1	P28742	1111 aa		4.77	□□□□□ -1.65
PBP4	YDL053C	LYP1	P32487	611 aa		4.77	□□□□□ -1.65
PBP4	YDL053C	TOS1	P38288	455 aa		4.77	□□□□□ -1.65
PBP4	YDL053C	OYE3	P41816	400 aa	Predicted RBP	4.77	□□□□□ -1.65
PBP4	YDL053C	CNN1	P43618	361 aa		4.77	□□□□□ -1.65
PBP4	YDL053C	CWC24	P53769	259 aa		4.77	□□□□□ -1.65
PBP4	YDL053C	GDE1	Q02979	1223 aa		4.77	□□□□□ -1.65
PBP4	YDL053C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.77	□□□□□ -1.65	not detected
PBP4	YDL053C	AOS1	Q06624	347 aa		4.77	□□□□□ -1.65
PBP4	YDL053C	RGD1	P38339	666 aa		4.76	□□□□□ -1.65
PBP4	YDL053C	GPB2	P39717	880 aa		4.76	□□□□□ -1.65
PBP4	YDL053C	YGR053C	P53234	283 aa		4.76	□□□□□ -1.65
PBP4	YDL053C	ALD6	P54115	500 aa	Known RBP	4.76	□□□□□ -1.65
PBP4	YDL053C	TIF35	Q04067	274 aa	Known RBP	4.76	□□□□□ -1.65
PBP4	YDL053C	NSI1	Q12457	570 aa		4.76	□□□□□ -1.65
PBP4	YDL053C	MLS1	P30952	554 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	OMA1	P36163	345 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	MCM7	P38132	845 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	PEX7	P39108	375 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	VAC8	P39968	578 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	MPH1	P40562	993 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	TYW3	P53177	273 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	SDH1	Q00711	640 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	TRE1	Q08919	783 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	YPL260W	Q08977	551 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	SPO21	Q12411	609 aa		4.75	□□□□□ -1.65
PBP4	YDL053C	SAM35	P14693	329 aa		4.74	□□□□□ -1.65
PBP4	YDL053C	YSC84	P32793	468 aa		4.74	□□□□□ -1.65
PBP4	YDL053C	MOT2	P34909	587 aa	Known RBP	4.74	□□□□□ -1.65
PBP4	YDL053C	YHL012W	P38709	493 aa		4.74	□□□□□ -1.65
PBP4	YDL053C	HNT2	P49775	206 aa		4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 33.3 ms