RNA–Protein interactions for RNA: YLR132C

USB1, Transcript of Putative phosphodiesterase specific for U6 snRNA 3' end modification, yeastyeast

Gene USB1, Length 873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USB1YLR132C YOR223WQ12015 292 aa6.35□□□□□ -1.39
USB1YLR132C CYC7P00045 113 aa6.34□□□□□ -1.39
USB1YLR132C PUB1P32588 453 aaKnown RBP RIP-Chip data6.34□□□□□ -1.39not detected
USB1YLR132C THI12P42883 340 aa6.34□□□□□ -1.39
USB1YLR132C THI5P43534 340 aa6.34□□□□□ -1.39
USB1YLR132C THI11P47183 340 aa6.34□□□□□ -1.39
USB1YLR132C GIC2Q06648 383 aa6.34□□□□□ -1.39
USB1YLR132C THI13Q07748 340 aa6.34□□□□□ -1.39
USB1YLR132C MSB1P21339 1137 aaKnown RBP6.33□□□□□ -1.4
USB1YLR132C LIP5P32875 414 aa6.33□□□□□ -1.4
USB1YLR132C IPL1P38991 367 aa6.33□□□□□ -1.4
USB1YLR132C SAP155P43612 1002 aa6.33□□□□□ -1.4
USB1YLR132C GCV1P48015 400 aa6.33□□□□□ -1.4
USB1YLR132C GPT2P36148 743 aa6.32□□□□□ -1.4
USB1YLR132C PPX1P38698 397 aa6.32□□□□□ -1.4
USB1YLR132C NUT1P53114 1132 aa6.32□□□□□ -1.4
USB1YLR132C BRE4Q07660 1125 aa6.32□□□□□ -1.4
USB1YLR132C INP54Q08227 384 aaKnown RBP6.32□□□□□ -1.4
USB1YLR132C DOT1Q04089 582 aaKnown RBP6.31□□□□□ -1.4
USB1YLR132C MAG2Q06436 670 aaKnown RBP6.31□□□□□ -1.4
USB1YLR132C TY1B-DR4Q07793 1604 aa6.31□□□□□ -1.4
USB1YLR132C SNU71P53207 620 aaKnown RBP6.3□□□□□ -1.4
USB1YLR132C UTP22P53254 1237 aaPredicted RBP6.3□□□□□ -1.4
USB1YLR132C YAF9P53930 226 aa6.3□□□□□ -1.4
USB1YLR132C PMT7Q06644 662 aa6.3□□□□□ -1.4
USB1YLR132C YLL054CQ12244 843 aa6.3□□□□□ -1.4
USB1YLR132C MEC3Q02574 474 aa6.29□□□□□ -1.4
USB1YLR132C MON1P53129 644 aa6.28□□□□□ -1.4
USB1YLR132C NOC3Q07896 663 aaPredicted RBP6.28□□□□□ -1.4
USB1YLR132C GCD1P09032 578 aaPredicted RBP6.27□□□□□ -1.41
USB1YLR132C MCM5P29496 775 aaKnown RBP6.27□□□□□ -1.41
USB1YLR132C WHI3P34761 661 aaKnown RBP6.27□□□□□ -1.41
USB1YLR132C SEA4P38164 1038 aa6.27□□□□□ -1.41
USB1YLR132C MGE1P38523 228 aa6.27□□□□□ -1.41
USB1YLR132C MMM1P41800 426 aa6.27□□□□□ -1.41
USB1YLR132C SDH1Q00711 640 aa6.27□□□□□ -1.41
USB1YLR132C ALG6Q12001 544 aaKnown RBP6.27□□□□□ -1.41
USB1YLR132C TY1A-LR4P0C2I8 440 aaKnown RBP6.26□□□□□ -1.41
USB1YLR132C TY1A-DR6P0CX70 440 aa6.26□□□□□ -1.41
USB1YLR132C TY1A-ER1P0CX71 440 aa6.26□□□□□ -1.41
USB1YLR132C TY1A-LR2P0CX72 440 aa6.26□□□□□ -1.41
USB1YLR132C TY1A-PLP0CX73 440 aa6.26□□□□□ -1.41
USB1YLR132C TY1A-JR1P0CX74 440 aa6.26□□□□□ -1.41
USB1YLR132C TY1A-LR3P0CX75 440 aa6.26□□□□□ -1.41
USB1YLR132C TY1A-ML2P0CX76 440 aa6.26□□□□□ -1.41
USB1YLR132C REI1P38344 393 aaPredicted RBP6.26□□□□□ -1.41
USB1YLR132C POL32P47110 350 aa6.26□□□□□ -1.41
USB1YLR132C SAM37P50110 327 aa6.26□□□□□ -1.41
USB1YLR132C NOP7P53261 605 aaKnown RBP6.26□□□□□ -1.41
USB1YLR132C TY1A-GR1Q12085 440 aa6.26□□□□□ -1.41
USB1YLR132C TY1A-PR3Q6Q5H1 440 aaKnown RBP6.26□□□□□ -1.41
USB1YLR132C TY1A-OLQ92392 440 aaKnown RBP6.26□□□□□ -1.41
USB1YLR132C RVS167P39743 482 aaKnown RBP6.25□□□□□ -1.41
USB1YLR132C GCD6P32501 712 aaKnown RBP6.24□□□□□ -1.41
USB1YLR132C CIT3P43635 486 aa6.24□□□□□ -1.41
USB1YLR132C AVT1P47082 602 aa6.24□□□□□ -1.41
USB1YLR132C TCB3Q03640 1545 aaKnown RBP6.24□□□□□ -1.41
USB1YLR132C CIC1P38779 376 aaKnown RBP6.23□□□□□ -1.41
USB1YLR132C MSH4P40965 878 aaPredicted RBP6.23□□□□□ -1.41
USB1YLR132C EXO5P38289 585 aa6.22□□□□□ -1.41
USB1YLR132C ALT1P52893 592 aa6.22□□□□□ -1.41
USB1YLR132C YCS4Q06156 1176 aa6.22□□□□□ -1.41
USB1YLR132C WHI5Q12416 295 aa6.22□□□□□ -1.41
USB1YLR132C RPS4AP0CX35 261 aaKnown RBP6.21□□□□□ -1.42
USB1YLR132C RPS4BP0CX36 261 aaKnown RBP6.21□□□□□ -1.42
USB1YLR132C IRC24P40580 263 aa6.21□□□□□ -1.42
USB1YLR132C YGR045CP53229 120 aa6.21□□□□□ -1.42
USB1YLR132C RCM1P53972 490 aa6.21□□□□□ -1.42
USB1YLR132C EAR1Q03212 550 aa6.21□□□□□ -1.42
USB1YLR132C PHO4P07270 312 aaKnown RBP6.2□□□□□ -1.42
USB1YLR132C ARL1P38116 183 aaKnown RBP6.2□□□□□ -1.42
USB1YLR132C OYE3P41816 400 aaPredicted RBP6.2□□□□□ -1.42
USB1YLR132C ELA1P53861 379 aaPredicted RBP6.2□□□□□ -1.42
USB1YLR132C YOR059CQ08448 450 aaKnown RBP6.2□□□□□ -1.42
USB1YLR132C MET4P32389 672 aa6.19□□□□□ -1.42
USB1YLR132C YKL077WP36081 392 aa6.19□□□□□ -1.42
USB1YLR132C NEM1P38757 446 aa6.19□□□□□ -1.42
USB1YLR132C SLS1P42900 643 aa6.19□□□□□ -1.42
USB1YLR132C OXR1Q08952 273 aa6.19□□□□□ -1.42
USB1YLR132C UGA4P32837 571 aa6.18□□□□□ -1.42
USB1YLR132C NOG1Q02892 647 aaKnown RBP6.18□□□□□ -1.42
USB1YLR132C NSI1Q12457 570 aa6.18□□□□□ -1.42
USB1YLR132C NFS1P25374 497 aa6.17□□□□□ -1.42
USB1YLR132C SMY2P32909 740 aaKnown RBP6.17□□□□□ -1.42
USB1YLR132C PRP40P33203 583 aaKnown RBP6.17□□□□□ -1.42
USB1YLR132C VPS35P34110 944 aa6.17□□□□□ -1.42
USB1YLR132C LRG1P35688 1017 aa6.17□□□□□ -1.42
USB1YLR132C SHU2P38957 223 aa6.17□□□□□ -1.42
USB1YLR132C AVO1Q08236 1176 aa6.17□□□□□ -1.42
USB1YLR132C ELM1P32801 640 aa6.16□□□□□ -1.42
USB1YLR132C TOS4Q06266 489 aa6.16□□□□□ -1.42
USB1YLR132C AOS1Q06624 347 aa6.16□□□□□ -1.42
USB1YLR132C YVC1Q12324 675 aa6.16□□□□□ -1.42
USB1YLR132C NAP1P25293 417 aaKnown RBP6.15□□□□□ -1.42
USB1YLR132C MSH3P25336 1018 aa6.15□□□□□ -1.42
USB1YLR132C RPT1P33299 467 aaKnown RBP6.15□□□□□ -1.42
USB1YLR132C NNK1P36003 928 aa6.15□□□□□ -1.42
USB1YLR132C DAK2P43550 591 aa6.15□□□□□ -1.42
USB1YLR132C ATE1P16639 503 aa6.14□□□□□ -1.43
USB1YLR132C POL12P38121 705 aaPredicted RBP6.14□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms