RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	NUT1	P53114	1132 aa		5.8	□□□□□ -1.48
RSM28	YDR494W	UTP22	P53254	1237 aa	Predicted RBP	5.8	□□□□□ -1.48
RSM28	YDR494W	FRT1	Q99332	602 aa		5.8	□□□□□ -1.48
RSM28	YDR494W	CIT3	P43635	486 aa		5.79	□□□□□ -1.48
RSM28	YDR494W	GPI13	Q07830	1017 aa		5.79	□□□□□ -1.48
RSM28	YDR494W	REI1	P38344	393 aa	Predicted RBP	5.78	□□□□□ -1.48
RSM28	YDR494W	YAF9	P53930	226 aa		5.78	□□□□□ -1.48
RSM28	YDR494W	NUT2	Q06213	157 aa		5.78	□□□□□ -1.48
RSM28	YDR494W	AOS1	Q06624	347 aa		5.78	□□□□□ -1.48
RSM28	YDR494W	PMT7	Q06644	662 aa		5.78	□□□□□ -1.48
RSM28	YDR494W	INP54	Q08227	384 aa	Known RBP	5.78	□□□□□ -1.48
RSM28	YDR494W	HAT1	Q12341	374 aa		5.78	□□□□□ -1.48
RSM28	YDR494W	ELM1	P32801	640 aa		5.77	□□□□□ -1.49
RSM28	YDR494W	ALG6	Q12001	544 aa	Known RBP	5.77	□□□□□ -1.49
RSM28	YDR494W	RCM1	P53972	490 aa		5.76	□□□□□ -1.49
RSM28	YDR494W	YOR059C	Q08448	450 aa	Known RBP	5.76	□□□□□ -1.49
RSM28	YDR494W	TY1A-LR4	P0C2I8	440 aa	Known RBP	5.75	□□□□□ -1.49
RSM28	YDR494W	RPS4A	P0CX35	261 aa	Known RBP	5.75	□□□□□ -1.49
RSM28	YDR494W	RPS4B	P0CX36	261 aa	Known RBP	5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-DR6	P0CX70	440 aa		5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-ER1	P0CX71	440 aa		5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-LR2	P0CX72	440 aa		5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-PL	P0CX73	440 aa		5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-JR1	P0CX74	440 aa		5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-LR3	P0CX75	440 aa		5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-ML2	P0CX76	440 aa		5.75	□□□□□ -1.49
RSM28	YDR494W	MCM5	P29496	775 aa	Known RBP	5.75	□□□□□ -1.49
RSM28	YDR494W	MSH4	P40965	878 aa	Predicted RBP	5.75	□□□□□ -1.49
RSM28	YDR494W	NOC3	Q07896	663 aa	Predicted RBP	5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-GR1	Q12085	440 aa		5.75	□□□□□ -1.49
RSM28	YDR494W	NSI1	Q12457	570 aa		5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	5.75	□□□□□ -1.49
RSM28	YDR494W	TY1A-OL	Q92392	440 aa	Known RBP	5.75	□□□□□ -1.49
RSM28	YDR494W	RVS167	P39743	482 aa	Known RBP	5.74	□□□□□ -1.49
RSM28	YDR494W	MON1	P53129	644 aa		5.74	□□□□□ -1.49
RSM28	YDR494W	LRG1	P35688	1017 aa		5.73	□□□□□ -1.49
RSM28	YDR494W	ARL1	P38116	183 aa	Known RBP	5.73	□□□□□ -1.49
RSM28	YDR494W	OYE3	P41816	400 aa	Predicted RBP	5.73	□□□□□ -1.49
RSM28	YDR494W	SAM37	P50110	327 aa		5.73	□□□□□ -1.49
RSM28	YDR494W	ALT1	P52893	592 aa		5.73	□□□□□ -1.49
RSM28	YDR494W	POL12	P38121	705 aa	Predicted RBP	5.72	□□□□□ -1.49
RSM28	YDR494W	YGR045C	P53229	120 aa		5.72	□□□□□ -1.49
RSM28	YDR494W	EAR1	Q03212	550 aa		5.72	□□□□□ -1.49
RSM28	YDR494W	SEG2	P34250	1132 aa		5.71	□□□□□ -1.5
RSM28	YDR494W	EXO5	P38289	585 aa		5.71	□□□□□ -1.5
RSM28	YDR494W	ELA1	P53861	379 aa	Predicted RBP	5.71	□□□□□ -1.5
RSM28	YDR494W	DFG16	Q99234	619 aa		5.71	□□□□□ -1.5
RSM28	YDR494W	NFS1	P25374	497 aa		5.7	□□□□□ -1.5
RSM28	YDR494W	SMY2	P32909	740 aa	Known RBP	5.7	□□□□□ -1.5
RSM28	YDR494W	YKL077W	P36081	392 aa		5.7	□□□□□ -1.5
RSM28	YDR494W	ECL1	P48235	211 aa		5.7	□□□□□ -1.5
RSM28	YDR494W	YCS4	Q06156	1176 aa		5.7	□□□□□ -1.5
RSM28	YDR494W	AVO1	Q08236	1176 aa		5.7	□□□□□ -1.5
RSM28	YDR494W	RNQ1	P25367	405 aa		5.69	□□□□□ -1.5
RSM28	YDR494W	CIC1	P38779	376 aa	Known RBP	5.69	□□□□□ -1.5
RSM28	YDR494W	SLS1	P42900	643 aa		5.69	□□□□□ -1.5
RSM28	YDR494W	YVC1	Q12324	675 aa		5.69	□□□□□ -1.5
RSM28	YDR494W	HSP78	P33416	811 aa		5.68	□□□□□ -1.5
RSM28	YDR494W	NNK1	P36003	928 aa		5.68	□□□□□ -1.5
RSM28	YDR494W	YHL050C	P38721	697 aa		5.68	□□□□□ -1.5
RSM28	YDR494W	YHR219W	P38900	624 aa		5.68	□□□□□ -1.5
RSM28	YDR494W	SHU2	P38957	223 aa		5.68	□□□□□ -1.5
RSM28	YDR494W	TRE1	Q08919	783 aa		5.68	□□□□□ -1.5
RSM28	YDR494W	ADP1	P25371	1049 aa		5.67	□□□□□ -1.5
RSM28	YDR494W	NEM1	P38757	446 aa		5.67	□□□□□ -1.5
RSM28	YDR494W	PEX7	P39108	375 aa		5.67	□□□□□ -1.5
RSM28	YDR494W	NOG1	Q02892	647 aa	Known RBP	5.67	□□□□□ -1.5
RSM28	YDR494W	UBP5	P39944	805 aa		5.66	□□□□□ -1.5
RSM28	YDR494W	NIT1	P40447	199 aa		5.66	□□□□□ -1.5
RSM28	YDR494W	SSY1	Q03770	852 aa		5.66	□□□□□ -1.5
RSM28	YDR494W	ORC3	P54790	616 aa		5.65	□□□□□ -1.5
RSM28	YDR494W	PHO4	P07270	312 aa	Known RBP	5.64	□□□□□ -1.51
RSM28	YDR494W	VPS35	P34110	944 aa		5.64	□□□□□ -1.51
RSM28	YDR494W	SSF1	P38789	453 aa	Predicted RBP	5.64	□□□□□ -1.51
RSM28	YDR494W	MTR4	P47047	1073 aa	Known RBP	5.64	□□□□□ -1.51
RSM28	YDR494W	UTP5	Q04177	643 aa	Known RBP	5.64	□□□□□ -1.51
RSM28	YDR494W	MSH3	P25336	1018 aa		5.63	□□□□□ -1.51
RSM28	YDR494W	PRO1	P32264	428 aa		5.63	□□□□□ -1.51
RSM28	YDR494W	GCD6	P32501	712 aa	Known RBP	5.63	□□□□□ -1.51
RSM28	YDR494W	PRP40	P33203	583 aa	Known RBP	5.63	□□□□□ -1.51
RSM28	YDR494W	YAR028W	P39548	234 aa		5.63	□□□□□ -1.51
RSM28	YDR494W	PUS7	Q08647	676 aa	Known RBP	5.63	□□□□□ -1.51
RSM28	YDR494W	LPX1	Q12405	387 aa	Known RBP	5.63	□□□□□ -1.51
RSM28	YDR494W	GAS1	P22146	559 aa	Known RBP	5.62	□□□□□ -1.51
RSM28	YDR494W	MET4	P32389	672 aa		5.62	□□□□□ -1.51
RSM28	YDR494W	UGA4	P32837	571 aa		5.62	□□□□□ -1.51
RSM28	YDR494W	KAR2	P16474	682 aa	Known RBP	5.61	□□□□□ -1.51
RSM28	YDR494W	PPX1	P38698	397 aa		5.61	□□□□□ -1.51
RSM28	YDR494W	PTC7	P38797	343 aa		5.61	□□□□□ -1.51
RSM28	YDR494W	PRP43	P53131	767 aa	Known RBP	5.61	□□□□□ -1.51
RSM28	YDR494W	PEX13	P80667	386 aa		5.61	□□□□□ -1.51
RSM28	YDR494W	ULP1	Q02724	621 aa		5.61	□□□□□ -1.51
RSM28	YDR494W	TPP1	Q03796	238 aa		5.61	□□□□□ -1.51
RSM28	YDR494W	DAL4	Q04895	635 aa		5.61	□□□□□ -1.51
RSM28	YDR494W	YLR257W	Q06146	321 aa	Known RBP	5.61	□□□□□ -1.51
RSM28	YDR494W	CDA2	Q06703	312 aa		5.61	□□□□□ -1.51
RSM28	YDR494W	RET1	P22276	1149 aa	Known RBP	5.6	□□□□□ -1.51
RSM28	YDR494W	TSA1	P34760	196 aa	Known RBP	5.6	□□□□□ -1.51
RSM28	YDR494W	MSC6	Q08818	692 aa	Known RBP	5.6	□□□□□ -1.51
RSM28	YDR494W	VMA4	P22203	233 aa	Known RBP	5.59	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 56.8 ms