RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C SLX4Q12098 748 aa7.27□□□□□ -1.25
DEF1YKL054C AMS1P22855 1083 aa7.26□□□□□ -1.25
DEF1YKL054C YBR197CP38306 217 aa7.26□□□□□ -1.25
DEF1YKL054C FAA3P39002 694 aa7.26□□□□□ -1.25
DEF1YKL054C RSP5P39940 809 aaKnown RBP7.26□□□□□ -1.25
DEF1YKL054C TIM54P47045 478 aa7.26□□□□□ -1.25
DEF1YKL054C FLC1Q08967 793 aa7.26□□□□□ -1.25
DEF1YKL054C TEC1P18412 486 aa7.25□□□□□ -1.25
DEF1YKL054C THI4P32318 326 aa7.25□□□□□ -1.25
DEF1YKL054C ESF2P53743 316 aaKnown RBP7.25□□□□□ -1.25
DEF1YKL054C NAN1Q02931 896 aaKnown RBP7.25□□□□□ -1.25
DEF1YKL054C SPO20Q04359 397 aa7.25□□□□□ -1.25
DEF1YKL054C PUS5Q06244 254 aa7.25□□□□□ -1.25
DEF1YKL054C OPI10Q08202 246 aa7.25□□□□□ -1.25
DEF1YKL054C CBC2Q08920 208 aaKnown RBP RIP-Chip data7.25□□□□□ -1.25not detected
DEF1YKL054C CDC34P14682 295 aa7.25□□□□□ -1.25
DEF1YKL054C VAC17P25591 423 aa7.25□□□□□ -1.25
DEF1YKL054C GUT2P32191 649 aa7.25□□□□□ -1.25
DEF1YKL054C UFD2P54860 961 aa7.25□□□□□ -1.25
DEF1YKL054C FRK1Q03002 865 aaPredicted RBP7.25□□□□□ -1.25
DEF1YKL054C ATG16Q03818 150 aa7.25□□□□□ -1.25
DEF1YKL054C ENT2Q05785 613 aa7.25□□□□□ -1.25
DEF1YKL054C PRI2P20457 528 aa7.24□□□□□ -1.25
DEF1YKL054C CDC55Q00362 526 aa7.24□□□□□ -1.25
DEF1YKL054C ADR1P07248 1323 aa7.24□□□□□ -1.25
DEF1YKL054C RPS0BP46654 252 aaKnown RBP7.24□□□□□ -1.25
DEF1YKL054C YJR120WP47157 116 aa7.24□□□□□ -1.25
DEF1YKL054C TGL2P54857 326 aa7.24□□□□□ -1.25
DEF1YKL054C FOX2Q02207 900 aaKnown RBP7.24□□□□□ -1.25
DEF1YKL054C TDA5Q06417 326 aaKnown RBP7.24□□□□□ -1.25
DEF1YKL054C RPN12P32496 274 aa7.23□□□□□ -1.25
DEF1YKL054C HOS4P40480 1083 aa7.23□□□□□ -1.25
DEF1YKL054C TMA17Q12513 150 aa7.23□□□□□ -1.25
DEF1YKL054C NGR1P32831 672 aaKnown RBP7.23□□□□□ -1.25
DEF1YKL054C STE5P32917 917 aa7.22□□□□□ -1.25
DEF1YKL054C CLA4P48562 842 aa7.22□□□□□ -1.25
DEF1YKL054C YNL011CP53980 444 aa7.22□□□□□ -1.25
DEF1YKL054C CAB1Q04430 367 aa7.22□□□□□ -1.25
DEF1YKL054C ERP4Q12450 207 aa7.22□□□□□ -1.25
DEF1YKL054C DPB3P27344 201 aa7.21□□□□□ -1.25
DEF1YKL054C NTG2Q08214 380 aa7.21□□□□□ -1.25
DEF1YKL054C CIT1P00890 479 aa7.21□□□□□ -1.26
DEF1YKL054C ATP4P05626 244 aa7.21□□□□□ -1.26
DEF1YKL054C AIM9P40053 627 aaKnown RBP7.21□□□□□ -1.26
DEF1YKL054C MTC5Q03897 1148 aa7.21□□□□□ -1.26
DEF1YKL054C ISC10P32645 267 aa7.2□□□□□ -1.26
DEF1YKL054C RPS0AP32905 252 aaKnown RBP7.2□□□□□ -1.26
DEF1YKL054C VID27P40157 782 aa7.2□□□□□ -1.26
DEF1YKL054C CWC22P53333 577 aaKnown RBP7.2□□□□□ -1.26
DEF1YKL054C ATG13Q06628 738 aa7.2□□□□□ -1.26
DEF1YKL054C CCP1P00431 361 aa7.19□□□□□ -1.26
DEF1YKL054C CAN1P04817 590 aa7.19□□□□□ -1.26
DEF1YKL054C MSH2P25847 964 aa7.19□□□□□ -1.26
DEF1YKL054C SAM37P50110 327 aa7.19□□□□□ -1.26
DEF1YKL054C SND1Q04007 877 aa7.19□□□□□ -1.26
DEF1YKL054C BDS1Q08347 646 aa7.19□□□□□ -1.26
DEF1YKL054C VMS1Q04311 632 aaKnown RBP7.19□□□□□ -1.26
DEF1YKL054C ESC2Q06340 456 aa7.19□□□□□ -1.26
DEF1YKL054C MPH2P0CD99 609 aa7.18□□□□□ -1.26
DEF1YKL054C PRE9P23638 258 aaKnown RBP7.18□□□□□ -1.26
DEF1YKL054C HIR1P32479 840 aa7.18□□□□□ -1.26
DEF1YKL054C NTH2P35172 780 aa7.18□□□□□ -1.26
DEF1YKL054C GPG1P53130 126 aa7.18□□□□□ -1.26
DEF1YKL054C HDA3Q06623 655 aa7.18□□□□□ -1.26
DEF1YKL054C TMA7Q3E764 64 aaKnown RBP7.18□□□□□ -1.26
DEF1YKL054C IES1P43579 692 aa7.17□□□□□ -1.26
DEF1YKL054C OXR1Q08952 273 aa7.17□□□□□ -1.26
DEF1YKL054C IXR1P33417 597 aa7.17□□□□□ -1.26
DEF1YKL054C RSC4Q02206 625 aa7.17□□□□□ -1.26
DEF1YKL054C SNU66Q12420 587 aaPredicted RBP7.17□□□□□ -1.26
DEF1YKL054C DAL5P15365 543 aa7.16□□□□□ -1.26
DEF1YKL054C GPP1P41277 250 aaKnown RBP7.16□□□□□ -1.26
DEF1YKL054C YFL034WP43564 1073 aa7.16□□□□□ -1.26
DEF1YKL054C DAS1P47005 663 aa7.16□□□□□ -1.26
DEF1YKL054C RLP24Q07915 199 aaKnown RBP7.16□□□□□ -1.26
DEF1YKL054C SRF1Q12516 437 aa7.16□□□□□ -1.26
DEF1YKL054C YBR184WP38299 523 aa7.15□□□□□ -1.26
DEF1YKL054C YHL008CP38750 627 aa7.15□□□□□ -1.26
DEF1YKL054C AIR1P40507 360 aaKnown RBP7.15□□□□□ -1.26
DEF1YKL054C YGR237CP50089 785 aa7.15□□□□□ -1.26
DEF1YKL054C YGR125WP53273 1036 aa7.15□□□□□ -1.26
DEF1YKL054C HED1Q03937 162 aa7.15□□□□□ -1.26
DEF1YKL054C RRI2Q12348 645 aa7.15□□□□□ -1.26
DEF1YKL054C RPL8BP29453 256 aaKnown RBP7.15□□□□□ -1.27
DEF1YKL054C MTC2P34246 357 aa7.15□□□□□ -1.27
DEF1YKL054C NIT1P40447 199 aa7.15□□□□□ -1.27
DEF1YKL054C MAL11P53048 616 aa7.15□□□□□ -1.27
DEF1YKL054C SYH1Q02875 849 aaKnown RBP7.15□□□□□ -1.27
DEF1YKL054C NOC3Q07896 663 aaPredicted RBP7.15□□□□□ -1.27
DEF1YKL054C YKL222CP35995 705 aa7.14□□□□□ -1.27
DEF1YKL054C MAL31P38156 614 aa7.14□□□□□ -1.27
DEF1YKL054C COG6P53959 839 aa7.14□□□□□ -1.27
DEF1YKL054C EEB1Q02891 456 aa7.14□□□□□ -1.27
DEF1YKL054C ISR1Q06098 443 aaKnown RBP7.14□□□□□ -1.27
DEF1YKL054C CYT1P07143 309 aa7.13□□□□□ -1.27
DEF1YKL054C KIP2P28743 706 aa7.13□□□□□ -1.27
DEF1YKL054C MRPS18P42847 217 aa7.13□□□□□ -1.27
DEF1YKL054C PFD1P46988 109 aa7.13□□□□□ -1.27
DEF1YKL054C CWH41P53008 833 aa7.13□□□□□ -1.27
DEF1YKL054C MCD1Q12158 566 aa7.13□□□□□ -1.27
Retrieved 100 of 5,963 RNA–protein pairs in 168.6 ms