RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeast

Gene SHH4, Length 507 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHH4	YLR164W	RRI2	Q12348	645 aa		11.94	□□□□□ -0.5
SHH4	YLR164W	RPT3	P33298	428 aa	Known RBP	11.93	□□□□□ -0.5
SHH4	YLR164W	AAP1	P37898	856 aa	Known RBP	11.93	□□□□□ -0.5
SHH4	YLR164W	YER156C	P40093	338 aa	Known RBP	11.93	□□□□□ -0.5
SHH4	YLR164W	GAS5	Q08193	484 aa		11.93	□□□□□ -0.5
SHH4	YLR164W	FAS2	P19097	1887 aa	Known RBP	11.93	□□□□□ -0.5
SHH4	YLR164W	KTR1	P27810	393 aa	Known RBP	11.92	□□□□□ -0.5
SHH4	YLR164W	INM2	Q05533	292 aa		11.92	□□□□□ -0.5
SHH4	YLR164W	YMR147W	P40218	223 aa	Known RBP	11.91	□□□□□ -0.5
SHH4	YLR164W	PBY1	P38254	753 aa		11.9	□□□□□ -0.5
SHH4	YLR164W	NUG1	P40010	520 aa	Known RBP	11.9	□□□□□ -0.5
SHH4	YLR164W	GRX7	P38068	203 aa		11.89	□□□□□ -0.51
SHH4	YLR164W	YIR014W	P40570	242 aa		11.89	□□□□□ -0.51
SHH4	YLR164W	GRX6	Q12438	231 aa		11.89	□□□□□ -0.51
SHH4	YLR164W	LAM4	P38800	1345 aa		11.88	□□□□□ -0.51
SHH4	YLR164W	HKR1	P41809	1802 aa		11.88	□□□□□ -0.51
SHH4	YLR164W	YKU70	P32807	602 aa		11.88	□□□□□ -0.51
SHH4	YLR164W	GSM1	P42950	618 aa		11.88	□□□□□ -0.51
SHH4	YLR164W	TOP1	P04786	769 aa		11.87	□□□□□ -0.51
SHH4	YLR164W	PIF1	P07271	859 aa		11.87	□□□□□ -0.51
SHH4	YLR164W	OPY1	P38271	328 aa		11.87	□□□□□ -0.51
SHH4	YLR164W	PKH3	Q03306	898 aa	Predicted RBP	11.87	□□□□□ -0.51
SHH4	YLR164W	FLO11	P08640	1367 aa		11.87	□□□□□ -0.51
SHH4	YLR164W	BBC1	P47068	1157 aa		11.86	□□□□□ -0.51
SHH4	YLR164W	KAR5	Q04746	504 aa		11.86	□□□□□ -0.51
SHH4	YLR164W	DPL1	Q05567	589 aa		11.86	□□□□□ -0.51
SHH4	YLR164W	FPR4	Q06205	392 aa	Predicted RBP	11.86	□□□□□ -0.51
SHH4	YLR164W	DIP2	Q12220	943 aa	Predicted RBP	11.86	□□□□□ -0.51
SHH4	YLR164W	TRL1	P09880	827 aa	Known RBP	11.85	□□□□□ -0.51
SHH4	YLR164W	PTK1	P36002	662 aa	Predicted RBP	11.85	□□□□□ -0.51
SHH4	YLR164W	STM1	P39015	273 aa	Known RBP	11.85	□□□□□ -0.51
SHH4	YLR164W	YFH7	P43591	353 aa		11.85	□□□□□ -0.51
SHH4	YLR164W	UBX2	Q04228	584 aa		11.84	□□□□□ -0.51
SHH4	YLR164W	NSG2	P53898	299 aa		11.83	□□□□□ -0.52
SHH4	YLR164W	WRS1	Q12109	432 aa	Known RBP	11.83	□□□□□ -0.52
SHH4	YLR164W	RLF2	Q12495	606 aa		11.83	□□□□□ -0.52
SHH4	YLR164W	ARG82	P07250	355 aa		11.82	□□□□□ -0.52
SHH4	YLR164W	SNF3	P10870	884 aa		11.82	□□□□□ -0.52
SHH4	YLR164W	OSH3	P38713	996 aa	Known RBP	11.82	□□□□□ -0.52
SHH4	YLR164W	PGA3	Q12746	312 aa	Known RBP	11.82	□□□□□ -0.52
SHH4	YLR164W	SHC1	P39000	512 aa		11.81	□□□□□ -0.52
SHH4	YLR164W	JJJ2	P46997	583 aa		11.81	□□□□□ -0.52
SHH4	YLR164W	PRP42	Q03776	544 aa	Known RBP	11.81	□□□□□ -0.52
SHH4	YLR164W	GAP1	P19145	602 aa	Predicted RBP	11.8	□□□□□ -0.52
SHH4	YLR164W	OPI1	P21957	404 aa		11.8	□□□□□ -0.52
SHH4	YLR164W	AIM9	P40053	627 aa	Known RBP	11.8	□□□□□ -0.52
SHH4	YLR164W	SQS1	P53866	767 aa	Known RBP	11.8	□□□□□ -0.52
SHH4	YLR164W	PPM2	Q08282	695 aa		11.8	□□□□□ -0.52
SHH4	YLR164W	FLO1	P32768	1537 aa		11.8	□□□□□ -0.52
SHH4	YLR164W	COQ1	P18900	473 aa		11.79	□□□□□ -0.52
SHH4	YLR164W	RPS7A	P26786	190 aa	Known RBP	11.79	□□□□□ -0.52
SHH4	YLR164W	AFG2	P32794	780 aa		11.79	□□□□□ -0.52
SHH4	YLR164W	TAH18	Q12181	623 aa		11.79	□□□□□ -0.52
SHH4	YLR164W	CYB2	P00175	591 aa		11.78	□□□□□ -0.52
SHH4	YLR164W	CHO2	P05374	869 aa	Known RBP	11.78	□□□□□ -0.52
SHH4	YLR164W	PCT1	P13259	424 aa		11.78	□□□□□ -0.52
SHH4	YLR164W	BOI1	P38041	980 aa	Known RBP	11.78	□□□□□ -0.52
SHH4	YLR164W	CIC1	P38779	376 aa	Known RBP	11.78	□□□□□ -0.52
SHH4	YLR164W	IRC8	P47046	822 aa		11.78	□□□□□ -0.52
SHH4	YLR164W	ATG20	Q07528	640 aa		11.78	□□□□□ -0.52
SHH4	YLR164W	RRG1	Q12167	365 aa	Predicted RBP	11.78	□□□□□ -0.52
SHH4	YLR164W	MDL2	P33311	773 aa		11.77	□□□□□ -0.53
SHH4	YLR164W	STV1	P37296	890 aa		11.77	□□□□□ -0.53
SHH4	YLR164W	SSA1	P10591	642 aa	Known RBP	11.75	□□□□□ -0.53
SHH4	YLR164W	TIF4632	P39936	914 aa	Known RBP	11.75	□□□□□ -0.53
SHH4	YLR164W	IOC3	P43596	787 aa		11.75	□□□□□ -0.53
SHH4	YLR164W	PSF3	Q12146	194 aa		11.75	□□□□□ -0.53
SHH4	YLR164W	MET1	P36150	593 aa		11.74	□□□□□ -0.53
SHH4	YLR164W	YHL050C	P38721	697 aa		11.74	□□□□□ -0.53
SHH4	YLR164W	NPL4	P33755	580 aa		11.73	□□□□□ -0.53
SHH4	YLR164W	VPS4	P52917	437 aa		11.73	□□□□□ -0.53
SHH4	YLR164W	PUS6	P53294	404 aa		11.73	□□□□□ -0.53
SHH4	YLR164W	HDA1	P53973	706 aa		11.73	□□□□□ -0.53
SHH4	YLR164W	IME2	P32581	645 aa		11.72	□□□□□ -0.53
SHH4	YLR164W	UTP7	P40055	554 aa	Known RBP	11.72	□□□□□ -0.53
SHH4	YLR164W	KRI1	P42846	591 aa	Known RBP	11.72	□□□□□ -0.53
SHH4	YLR164W	APL6	P46682	809 aa		11.72	□□□□□ -0.53
SHH4	YLR164W	TRM44	Q02648	567 aa	Known RBP	11.72	□□□□□ -0.53
SHH4	YLR164W	RNR2	P09938	399 aa	Known RBP	11.71	□□□□□ -0.53
SHH4	YLR164W	SRS2	P12954	1174 aa		11.71	□□□□□ -0.53
SHH4	YLR164W	IMP2'	P32351	346 aa		11.71	□□□□□ -0.53
SHH4	YLR164W	YJL171C	P46992	396 aa		11.71	□□□□□ -0.53
SHH4	YLR164W	NPA3	P47122	385 aa		11.71	□□□□□ -0.53
SHH4	YLR164W	MTC3	P53077	123 aa		11.71	□□□□□ -0.53
SHH4	YLR164W	FPK1	P53739	893 aa		11.71	□□□□□ -0.53
SHH4	YLR164W	ECM23	Q02710	187 aa		11.71	□□□□□ -0.53
SHH4	YLR164W	TSR3	Q12094	313 aa	Known RBP	11.71	□□□□□ -0.53
SHH4	YLR164W	GEF1	P37020	779 aa		11.7	□□□□□ -0.54
SHH4	YLR164W	SLI15	P38283	698 aa		11.7	□□□□□ -0.54
SHH4	YLR164W	VID28	P40547	921 aa		11.7	□□□□□ -0.54
SHH4	YLR164W	PTK2	P47116	818 aa	Known RBP	11.7	□□□□□ -0.54
SHH4	YLR164W	PIP2	P52960	996 aa		11.7	□□□□□ -0.54
SHH4	YLR164W	VPS20	Q04272	221 aa		11.7	□□□□□ -0.54
SHH4	YLR164W	MSM1	P22438	575 aa		11.69	□□□□□ -0.54
SHH4	YLR164W	PEP3	P27801	918 aa		11.69	□□□□□ -0.54
SHH4	YLR164W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	11.69	□□□□□ -0.54	not detected
SHH4	YLR164W	ENP2	P48234	707 aa	Known RBP	11.69	□□□□□ -0.54
SHH4	YLR164W	ACK1	Q07622	623 aa	Predicted RBP	11.69	□□□□□ -0.54
SHH4	YLR164W	SSF2	Q12153	453 aa	Predicted RBP	11.69	□□□□□ -0.54
SHH4	YLR164W	FET4	P40988	552 aa		11.68	□□□□□ -0.54

Retrieved 100 of 5,963 RNA–protein pairs in 43 ms