RNA–Protein interactions for RNA: YGR002C

SWC4, Transcript of Component of the Swr1p complex that incorporates Htz1p into chromatin, yeast

Gene SWC4, Length 1,431 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWC4	YGR002C	YDR461C-A	Q2V2P7	80 aa		5	□□□□□ -1.61
SWC4	YGR002C	SSF1	P38789	453 aa	Predicted RBP	4.99	□□□□□ -1.61
SWC4	YGR002C	QDR2	P40474	542 aa		4.99	□□□□□ -1.61
SWC4	YGR002C	SPR3	P41901	512 aa		4.99	□□□□□ -1.61
SWC4	YGR002C	YBL113C	Q7M4S9	792 aa		4.99	□□□□□ -1.61
SWC4	YGR002C	GLO3	P38682	493 aa	Known RBP	4.98	□□□□□ -1.61
SWC4	YGR002C	ERP5	P38819	212 aa		4.98	□□□□□ -1.61
SWC4	YGR002C	MRPL33	P20084	86 aa		4.97	□□□□□ -1.61
SWC4	YGR002C	BOI1	P38041	980 aa	Known RBP	4.97	□□□□□ -1.61
SWC4	YGR002C	GRS1	P38088	690 aa	Known RBP	4.97	□□□□□ -1.61
SWC4	YGR002C	VMA3	P25515	160 aa		4.97	□□□□□ -1.61
SWC4	YGR002C	NCL1	P38205	684 aa	Known RBP	4.97	□□□□□ -1.61
SWC4	YGR002C	DYS1	P38791	387 aa		4.97	□□□□□ -1.61
SWC4	YGR002C	QDR1	P40475	563 aa		4.97	□□□□□ -1.61
SWC4	YGR002C	CUS1	Q02554	436 aa	Predicted RBP	4.97	□□□□□ -1.61
SWC4	YGR002C	RPB10	P22139	70 aa		4.96	□□□□□ -1.62
SWC4	YGR002C	LDH1	P38139	375 aa		4.96	□□□□□ -1.62
SWC4	YGR002C	SUT1	P53032	299 aa	Known RBP	4.95	□□□□□ -1.62
SWC4	YGR002C	ATG1	P53104	897 aa		4.95	□□□□□ -1.62
SWC4	YGR002C	LSO1	Q3E827	93 aa		4.95	□□□□□ -1.62
SWC4	YGR002C	AI1	P03875	834 aa		4.94	□□□□□ -1.62
SWC4	YGR002C	TY1A-DR2	Q03964	440 aa	Known RBP	4.94	□□□□□ -1.62
SWC4	YGR002C	TRL1	P09880	827 aa	Known RBP	4.93	□□□□□ -1.62
SWC4	YGR002C	RPC31	P17890	251 aa		4.93	□□□□□ -1.62
SWC4	YGR002C	APM2	P38700	605 aa		4.93	□□□□□ -1.62
SWC4	YGR002C	SKP1	P52286	194 aa		4.93	□□□□□ -1.62
SWC4	YGR002C	NSG2	P53898	299 aa		4.93	□□□□□ -1.62
SWC4	YGR002C	NOP8	Q08287	484 aa	Predicted RBP	4.93	□□□□□ -1.62
SWC4	YGR002C	THI72	Q08579	599 aa		4.93	□□□□□ -1.62
SWC4	YGR002C	GPM1	P00950	247 aa	Known RBP	4.92	□□□□□ -1.62
SWC4	YGR002C	MDJ2	P42834	146 aa		4.92	□□□□□ -1.62
SWC4	YGR002C	HEH2	Q03281	663 aa		4.92	□□□□□ -1.62
SWC4	YGR002C	GIP1	P38229	639 aa		4.91	□□□□□ -1.62
SWC4	YGR002C	BSD2	P38356	321 aa		4.91	□□□□□ -1.62
SWC4	YGR002C	MSC7	P38694	644 aa		4.91	□□□□□ -1.62
SWC4	YGR002C	FIR1	P40020	876 aa		4.91	□□□□□ -1.62
SWC4	YGR002C	YNR040W	P53736	256 aa		4.91	□□□□□ -1.62
SWC4	YGR002C	YOR296W	Q08748	1289 aa		4.91	□□□□□ -1.62
SWC4	YGR002C	APC11	Q12157	165 aa		4.91	□□□□□ -1.62
SWC4	YGR002C	PDC5	P16467	563 aa	Known RBP	4.9	□□□□□ -1.62
SWC4	YGR002C	KTR2	P33550	425 aa		4.9	□□□□□ -1.62
SWC4	YGR002C	SLD2	P34252	453 aa		4.9	□□□□□ -1.62
SWC4	YGR002C	MDJ1	P35191	511 aa		4.9	□□□□□ -1.62
SWC4	YGR002C	ISW1	P38144	1129 aa		4.9	□□□□□ -1.62
SWC4	YGR002C	YHL050C	P38721	697 aa		4.9	□□□□□ -1.62
SWC4	YGR002C	YHR219W	P38900	624 aa		4.9	□□□□□ -1.62
SWC4	YGR002C	YNR014W	P53719	212 aa		4.9	□□□□□ -1.62
SWC4	YGR002C	KNS1	P32350	737 aa	Predicted RBP	4.89	□□□□□ -1.63
SWC4	YGR002C	YBR287W	P38355	427 aa		4.89	□□□□□ -1.63
SWC4	YGR002C	STM1	P39015	273 aa	Known RBP	4.89	□□□□□ -1.63
SWC4	YGR002C	HXT8	P40886	569 aa		4.89	□□□□□ -1.63
SWC4	YGR002C	ACF4	P47129	309 aa		4.89	□□□□□ -1.63
SWC4	YGR002C	SEN54	Q02825	467 aa	Predicted RBP	4.89	□□□□□ -1.63
SWC4	YGR002C	FRT1	Q99332	602 aa		4.89	□□□□□ -1.63
SWC4	YGR002C	MSN1	P22148	382 aa		4.89	□□□□□ -1.63
SWC4	YGR002C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	RIP-Chip
SWC4	YGR002C	PRK1	P40494	810 aa		4.89	□□□□□ -1.63
SWC4	YGR002C	SBE2	P42223	864 aa	Known RBP	4.89	□□□□□ -1.63
SWC4	YGR002C	NUT2	Q06213	157 aa		4.89	□□□□□ -1.63
SWC4	YGR002C	MET1	P36150	593 aa		4.88	□□□□□ -1.63
SWC4	YGR002C	IPL1	P38991	367 aa		4.88	□□□□□ -1.63
SWC4	YGR002C	BOI2	P39969	1040 aa		4.88	□□□□□ -1.63
SWC4	YGR002C	ITC1	P53125	1264 aa		4.88	□□□□□ -1.63
SWC4	YGR002C	PUS1	Q12211	544 aa	Known RBP	4.88	□□□□□ -1.63
SWC4	YGR002C	PHM7	Q12252	991 aa		4.88	□□□□□ -1.63
SWC4	YGR002C	ICP55	P40051	511 aa		4.87	□□□□□ -1.63
SWC4	YGR002C	UFD2	P54860	961 aa		4.87	□□□□□ -1.63
SWC4	YGR002C	TRS120	Q04183	1289 aa		4.87	□□□□□ -1.63
SWC4	YGR002C	IDI1	P15496	288 aa		4.86	□□□□□ -1.63
SWC4	YGR002C	SMC1	P32908	1225 aa		4.86	□□□□□ -1.63
SWC4	YGR002C	RAD55	P38953	406 aa		4.86	□□□□□ -1.63
SWC4	YGR002C	THI12	P42883	340 aa		4.86	□□□□□ -1.63
SWC4	YGR002C	THI5	P43534	340 aa		4.86	□□□□□ -1.63
SWC4	YGR002C	THI11	P47183	340 aa		4.86	□□□□□ -1.63
SWC4	YGR002C	TDA6	Q06466	467 aa		4.86	□□□□□ -1.63
SWC4	YGR002C	THI13	Q07748	340 aa		4.86	□□□□□ -1.63
SWC4	YGR002C	MSC6	Q08818	692 aa	Known RBP	4.86	□□□□□ -1.63
SWC4	YGR002C	SEC20	P28791	383 aa		4.85	□□□□□ -1.63
SWC4	YGR002C	ALG14	P38242	237 aa		4.85	□□□□□ -1.63
SWC4	YGR002C	AIM46	P38885	310 aa		4.85	□□□□□ -1.63
SWC4	YGR002C	RGD2	P43556	714 aa		4.85	□□□□□ -1.63
SWC4	YGR002C	YJL181W	P46987	611 aa		4.85	□□□□□ -1.63
SWC4	YGR002C	PPX1	P38698	397 aa		4.84	□□□□□ -1.63
SWC4	YGR002C	YER156C	P40093	338 aa	Known RBP	4.84	□□□□□ -1.63
SWC4	YGR002C	YIL165C	P40446	119 aa		4.84	□□□□□ -1.63
SWC4	YGR002C	YFL066C	P43538	392 aa		4.84	□□□□□ -1.63
SWC4	YGR002C	PPT1	P53043	513 aa		4.84	□□□□□ -1.63
SWC4	YGR002C	RSC2	Q06488	889 aa		4.84	□□□□□ -1.63
SWC4	YGR002C	WHI5	Q12416	295 aa		4.84	□□□□□ -1.63
SWC4	YGR002C	TIF6	Q12522	245 aa	Known RBP	4.84	□□□□□ -1.63
SWC4	YGR002C	PGM2	P37012	569 aa	Known RBP	4.83	□□□□□ -1.64
SWC4	YGR002C	YPR053C	Q6Q5F3	151 aa		4.83	□□□□□ -1.64
SWC4	YGR002C	NHA1	Q99271	985 aa		4.83	□□□□□ -1.64
SWC4	YGR002C	IRS4	P36115	615 aa	Known RBP	4.82	□□□□□ -1.64
SWC4	YGR002C	NTA1	P40354	457 aa		4.82	□□□□□ -1.64
SWC4	YGR002C	YMR187C	Q03236	431 aa		4.82	□□□□□ -1.64
SWC4	YGR002C	MRP10	O75012	95 aa		4.81	□□□□□ -1.64
SWC4	YGR002C	PSY2	P40164	858 aa		4.81	□□□□□ -1.64
SWC4	YGR002C	GIS4	Q04233	774 aa		4.81	□□□□□ -1.64
SWC4	YGR002C	EMG1	Q06287	252 aa	Known RBP	4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 65.2 ms