RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	STP22	P25604	385 aa		1.04	□□□□□ -2.24
RSM28	YDR494W	SBH1	P52870	82 aa		1.04	□□□□□ -2.24
RSM28	YDR494W	PGA1	P53896	198 aa		1.04	□□□□□ -2.24
RSM28	YDR494W	MET31	Q03081	177 aa		1.04	□□□□□ -2.24
RSM28	YDR494W	RRP17	Q04031	235 aa	Predicted RBP	1.04	□□□□□ -2.24
RSM28	YDR494W	YLR412C-A	Q3E742	68 aa		1.04	□□□□□ -2.24
RSM28	YDR494W	NSA2	P40078	261 aa	Known RBP	1.03	□□□□□ -2.24
RSM28	YDR494W	PIR1	Q03178	341 aa		1.03	□□□□□ -2.24
RSM28	YDR494W	GRX8	Q05926	109 aa		1.03	□□□□□ -2.24
RSM28	YDR494W	FYV12	Q08559	129 aa		1.03	□□□□□ -2.24
RSM28	YDR494W	YER188C-A	P0C0V2	99 aa		1.02	□□□□□ -2.25
RSM28	YDR494W	SEN2	P16658	377 aa		1.02	□□□□□ -2.25
RSM28	YDR494W	SHG1	P38337	142 aa		1.02	□□□□□ -2.25
RSM28	YDR494W	NRK1	P53915	240 aa		1.02	□□□□□ -2.25
RSM28	YDR494W	DAS2	Q12084	232 aa		1.02	□□□□□ -2.25
RSM28	YDR494W	YOR015W	Q12169	119 aa		1.02	□□□□□ -2.25
RSM28	YDR494W	ATP20	Q12233	115 aa		1.02	□□□□□ -2.25
RSM28	YDR494W	YLR422W	Q06409	1932 aa		1.01	□□□□□ -2.25
RSM28	YDR494W	STF2	P16965	84 aa		1.01	□□□□□ -2.25
RSM28	YDR494W	MRPL15	P36523	253 aa		1.01	□□□□□ -2.25
RSM28	YDR494W	YGL235W	P53071	178 aa		1.01	□□□□□ -2.25
RSM28	YDR494W	YDR391C	Q04170	232 aa		1.01	□□□□□ -2.25
RSM28	YDR494W	BRX1	Q08235	291 aa	Known RBP	1.01	□□□□□ -2.25
RSM28	YDR494W	MPD1	Q12404	318 aa	Known RBP	1.01	□□□□□ -2.25
RSM28	YDR494W	AHC2	P25649	128 aa		1	□□□□□ -2.25
RSM28	YDR494W	FMP32	P43557	207 aa		1	□□□□□ -2.25
RSM28	YDR494W	HOP2	P53187	214 aa		1	□□□□□ -2.25
RSM28	YDR494W	GRX5	Q02784	150 aa		1	□□□□□ -2.25
RSM28	YDR494W	AIM36	Q03798	255 aa		1	□□□□□ -2.25
RSM28	YDR494W	SHH4	Q06236	168 aa		1	□□□□□ -2.25
RSM28	YDR494W	PST2	Q12335	198 aa	Known RBP	1	□□□□□ -2.25
RSM28	YDR494W	DGK1	Q12382	290 aa		1	□□□□□ -2.25
RSM28	YDR494W	UBC8	P28263	218 aa		0.99	□□□□□ -2.25
RSM28	YDR494W	AHT1	P29589	182 aa		0.99	□□□□□ -2.25
RSM28	YDR494W	RRT1	P38192	103 aa		0.99	□□□□□ -2.25
RSM28	YDR494W	SBH2	P52871	88 aa		0.99	□□□□□ -2.25
RSM28	YDR494W	SNO1	Q03144	224 aa		0.99	□□□□□ -2.25
RSM28	YDR494W	TLG1	Q03322	224 aa		0.99	□□□□□ -2.25
RSM28	YDR494W	GAL83	Q04739	417 aa		0.99	□□□□□ -2.25
RSM28	YDR494W	UPS1	Q05776	175 aa		0.99	□□□□□ -2.25
RSM28	YDR494W	ATG38	Q05789	226 aa	Known RBP	0.99	□□□□□ -2.25
RSM28	YDR494W	TAR1	Q8TGM6	124 aa		0.99	□□□□□ -2.25
RSM28	YDR494W	YBL010C	P32788	280 aa		0.98	□□□□□ -2.25
RSM28	YDR494W	YKL102C	P34249	101 aa		0.98	□□□□□ -2.25
RSM28	YDR494W	MAK5	P38112	773 aa	Predicted RBP	0.98	□□□□□ -2.25
RSM28	YDR494W	YBR242W	P38331	238 aa		0.98	□□□□□ -2.25
RSM28	YDR494W	MPM1	P40364	252 aa		0.98	□□□□□ -2.25
RSM28	YDR494W	GIM3	P53900	129 aa		0.98	□□□□□ -2.25
RSM28	YDR494W	YET3	Q07451	203 aa		0.98	□□□□□ -2.25
RSM28	YDR494W	GRE1	Q08969	168 aa		0.98	□□□□□ -2.25
RSM28	YDR494W	YPR203W	Q08994	102 aa		0.98	□□□□□ -2.25
RSM28	YDR494W	NSE4	P43124	402 aa		0.97	□□□□□ -2.25
RSM28	YDR494W	DML1	Q03652	475 aa		0.97	□□□□□ -2.25
RSM28	YDR494W	GPI17	Q04080	534 aa		0.97	□□□□□ -2.25
RSM28	YDR494W	YHP1	Q04116	353 aa		0.97	□□□□□ -2.25
RSM28	YDR494W	LCL2	Q08045	131 aa		0.97	□□□□□ -2.25
RSM28	YDR494W	YMR030W-A	Q3E760	96 aa		0.97	□□□□□ -2.25
RSM28	YDR494W	SAC3	P46674	1301 aa		0.96	□□□□□ -2.26
RSM28	YDR494W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	0.96	□□□□□ -2.26	not detected
RSM28	YDR494W	SEC14	P24280	304 aa	Known RBP	0.96	□□□□□ -2.26
RSM28	YDR494W	HSP30	P25619	332 aa		0.96	□□□□□ -2.26
RSM28	YDR494W	YKR041W	P36134	250 aa		0.96	□□□□□ -2.26
RSM28	YDR494W	RFC2	P40348	353 aa		0.96	□□□□□ -2.26
RSM28	YDR494W	VPS28	Q02767	242 aa		0.96	□□□□□ -2.26
RSM28	YDR494W	ATG41	Q12048	136 aa		0.96	□□□□□ -2.26
RSM28	YDR494W	DUR1,2	P32528	1835 aa	Known RBP	0.96	□□□□□ -2.26
RSM28	YDR494W	ATP7	P30902	174 aa		0.95	□□□□□ -2.26
RSM28	YDR494W	ETR1	P38071	380 aa		0.95	□□□□□ -2.26
RSM28	YDR494W	YHL037C	P38733	133 aa		0.95	□□□□□ -2.26
RSM28	YDR494W	YFL051C	P43552	160 aa		0.95	□□□□□ -2.26
RSM28	YDR494W	ELP6	Q04868	273 aa		0.95	□□□□□ -2.26
RSM28	YDR494W	RPL35A	P0CX84	120 aa	Known RBP	0.94	□□□□□ -2.26
RSM28	YDR494W	RPL35B	P0CX85	120 aa	Known RBP	0.94	□□□□□ -2.26
RSM28	YDR494W	RME1	P32338	300 aa	Known RBP	0.94	□□□□□ -2.26
RSM28	YDR494W	EGD2	P38879	174 aa	Known RBP	0.94	□□□□□ -2.26
RSM28	YDR494W	NVJ1	P38881	321 aa		0.94	□□□□□ -2.26
RSM28	YDR494W	HHT1	P61830	136 aa		0.94	□□□□□ -2.26
RSM28	YDR494W	HPT1	Q04178	221 aa	Known RBP	0.94	□□□□□ -2.26
RSM28	YDR494W	FIT1	Q04433	528 aa		0.94	□□□□□ -2.26
RSM28	YDR494W	MAK31	P23059	88 aa		0.93	□□□□□ -2.26
RSM28	YDR494W	CPR5	P35176	225 aa		0.93	□□□□□ -2.26
RSM28	YDR494W	FYV4	P38783	130 aa	Predicted RBP	0.93	□□□□□ -2.26
RSM28	YDR494W	CCS1	P40202	249 aa	Known RBP	0.93	□□□□□ -2.26
RSM28	YDR494W	POG1	P40473	351 aa		0.93	□□□□□ -2.26
RSM28	YDR494W	JAC1	P53193	184 aa		0.93	□□□□□ -2.26
RSM28	YDR494W	YIP3	P53633	176 aa		0.93	□□□□□ -2.26
RSM28	YDR494W	RIM9	Q04734	239 aa		0.93	□□□□□ -2.26
RSM28	YDR494W	YOR214C	Q12282	236 aa		0.93	□□□□□ -2.26
RSM28	YDR494W	YOR381W-A	Q3E804	55 aa		0.93	□□□□□ -2.26
RSM28	YDR494W	QCR6	P00127	147 aa		0.92	□□□□□ -2.26
RSM28	YDR494W	CLG1	P35190	452 aa		0.92	□□□□□ -2.26
RSM28	YDR494W	TIM13	P53299	105 aa		0.92	□□□□□ -2.26
RSM28	YDR494W	YKR005C	Q02203	525 aa		0.92	□□□□□ -2.26
RSM28	YDR494W	SMD2	Q06217	110 aa	Known RBP	0.92	□□□□□ -2.26
RSM28	YDR494W	YPR127W	Q06494	345 aa		0.92	□□□□□ -2.26
RSM28	YDR494W	RAD51	P25454	400 aa		0.91	□□□□□ -2.26
RSM28	YDR494W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.91	□□□□□ -2.26	not detected
RSM28	YDR494W	SEC72	P39742	193 aa	Known RBP	0.91	□□□□□ -2.26
RSM28	YDR494W	YNL200C	P40165	246 aa	Known RBP	0.91	□□□□□ -2.26
RSM28	YDR494W	TTI2	P47168	421 aa		0.91	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms