RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W ARG8P18544 423 aa7.24□□□□□ -1.25
ATG4YNL223W GLN1P32288 370 aaKnown RBP7.24□□□□□ -1.25
ATG4YNL223W APL2P36000 726 aaPredicted RBP7.24□□□□□ -1.25
ATG4YNL223W MDG1P53885 366 aa7.24□□□□□ -1.25
ATG4YNL223W GCD7P32502 381 aaPredicted RBP7.24□□□□□ -1.25
ATG4YNL223W YJL181WP46987 611 aa7.24□□□□□ -1.25
ATG4YNL223W MSB4Q12317 492 aa7.24□□□□□ -1.25
ATG4YNL223W UTP10P42945 1769 aaKnown RBP7.23□□□□□ -1.25
ATG4YNL223W YLR271WQ06152 274 aa7.23□□□□□ -1.25
ATG4YNL223W LPD1P09624 499 aaKnown RBP7.22□□□□□ -1.25
ATG4YNL223W SET1P38827 1080 aaKnown RBP7.22□□□□□ -1.25
ATG4YNL223W TEA1P47988 759 aa7.22□□□□□ -1.25
ATG4YNL223W HGH1P48362 394 aaKnown RBP7.22□□□□□ -1.25
ATG4YNL223W GRE2Q12068 342 aaKnown RBP7.22□□□□□ -1.25
ATG4YNL223W NMD2P38798 1089 aaKnown RBP7.21□□□□□ -1.26
ATG4YNL223W UBP12P39538 1254 aa7.21□□□□□ -1.26
ATG4YNL223W ECM16Q04217 1267 aaKnown RBP7.21□□□□□ -1.26
ATG4YNL223W BUD31P25337 157 aaPredicted RBP7.2□□□□□ -1.26
ATG4YNL223W YGL082WP53155 381 aa7.2□□□□□ -1.26
ATG4YNL223W NYV1Q12255 253 aa7.2□□□□□ -1.26
ATG4YNL223W UBP1P25037 809 aa7.19□□□□□ -1.26
ATG4YNL223W NKP2Q06162 153 aa7.19□□□□□ -1.26
ATG4YNL223W SLX5P32828 619 aaKnown RBP7.18□□□□□ -1.26
ATG4YNL223W SER1P33330 395 aaKnown RBP7.18□□□□□ -1.26
ATG4YNL223W RFC1P38630 861 aaKnown RBP7.18□□□□□ -1.26
ATG4YNL223W ITC1P53125 1264 aa7.18□□□□□ -1.26
ATG4YNL223W FCP1Q03254 732 aa7.18□□□□□ -1.26
ATG4YNL223W CDC16P09798 840 aa7.17□□□□□ -1.26
ATG4YNL223W LYS4P49367 693 aaPredicted RBP7.17□□□□□ -1.26
ATG4YNL223W PKH1Q03407 766 aa7.17□□□□□ -1.26
ATG4YNL223W YIR014WP40570 242 aa7.17□□□□□ -1.26
ATG4YNL223W HXT10P43581 546 aa7.17□□□□□ -1.26
ATG4YNL223W RAD50P12753 1312 aa7.16□□□□□ -1.26
ATG4YNL223W RSM7P47150 247 aa7.16□□□□□ -1.26
ATG4YNL223W PSH1Q12161 406 aa7.16□□□□□ -1.26
ATG4YNL223W BUG1Q12191 341 aa7.16□□□□□ -1.26
ATG4YNL223W SSF1P38789 453 aaPredicted RBP7.15□□□□□ -1.27
ATG4YNL223W CTH1P47976 325 aa7.15□□□□□ -1.27
ATG4YNL223W MTC5Q03897 1148 aa7.15□□□□□ -1.27
ATG4YNL223W BDF1P35817 686 aa7.14□□□□□ -1.27
ATG4YNL223W EPS1P40557 701 aa7.14□□□□□ -1.27
ATG4YNL223W BDP1P46678 594 aa7.14□□□□□ -1.27
ATG4YNL223W UTP22P53254 1237 aaPredicted RBP7.14□□□□□ -1.27
ATG4YNL223W SSK22P25390 1331 aaPredicted RBP7.14□□□□□ -1.27
ATG4YNL223W OPY1P38271 328 aa7.13□□□□□ -1.27
ATG4YNL223W HAT1Q12341 374 aa7.13□□□□□ -1.27
ATG4YNL223W NCB2Q92317 146 aa7.13□□□□□ -1.27
ATG4YNL223W SAC3P46674 1301 aa7.13□□□□□ -1.27
ATG4YNL223W SUP35P05453 685 aaKnown RBP7.12□□□□□ -1.27
ATG4YNL223W NOT3P06102 836 aaKnown RBP7.11□□□□□ -1.27
ATG4YNL223W ECM21P38167 1117 aaKnown RBP7.11□□□□□ -1.27
ATG4YNL223W GCR2Q01722 534 aa7.11□□□□□ -1.27
ATG4YNL223W RAT1Q02792 1006 aaKnown RBP7.11□□□□□ -1.27
ATG4YNL223W SLA1P32790 1244 aa7.11□□□□□ -1.27
ATG4YNL223W KTR3P38130 404 aaPredicted RBP7.11□□□□□ -1.27
ATG4YNL223W BRN1P38170 754 aa7.11□□□□□ -1.27
ATG4YNL223W TOS1P38288 455 aa7.11□□□□□ -1.27
ATG4YNL223W YGL242CP53066 181 aa7.11□□□□□ -1.27
ATG4YNL223W UBP16Q02863 499 aa7.11□□□□□ -1.27
ATG4YNL223W CTI6Q08923 506 aa7.11□□□□□ -1.27
ATG4YNL223W GYP5Q12344 894 aa7.11□□□□□ -1.27
ATG4YNL223W PDR18P53756 1333 aa7.1□□□□□ -1.27
ATG4YNL223W DLD1P32891 587 aa7.1□□□□□ -1.27
ATG4YNL223W TIF4632P39936 914 aaKnown RBP7.1□□□□□ -1.27
ATG4YNL223W GTT3P39996 337 aa7.1□□□□□ -1.27
ATG4YNL223W ALD2P47771 506 aa7.1□□□□□ -1.27
ATG4YNL223W MLC1P53141 149 aa7.1□□□□□ -1.27
ATG4YNL223W ALO1P54783 526 aaKnown RBP7.1□□□□□ -1.27
ATG4YNL223W SNU66Q12420 587 aaPredicted RBP7.1□□□□□ -1.27
ATG4YNL223W VAS1P07806 1104 aaKnown RBP7.09□□□□□ -1.27
ATG4YNL223W YBL086CP38177 466 aa7.09□□□□□ -1.27
ATG4YNL223W ALD3P54114 506 aa7.09□□□□□ -1.27
ATG4YNL223W RIX7Q07844 837 aaKnown RBP7.09□□□□□ -1.27
ATG4YNL223W AI2P03876 854 aa7.08□□□□□ -1.28
ATG4YNL223W SSA2P10592 639 aaKnown RBP7.08□□□□□ -1.28
ATG4YNL223W SEC18P18759 758 aaKnown RBP7.08□□□□□ -1.28
ATG4YNL223W IME2P32581 645 aa7.08□□□□□ -1.28
ATG4YNL223W TGL3P40308 642 aa7.08□□□□□ -1.28
ATG4YNL223W MRPS35P53292 345 aa7.08□□□□□ -1.28
ATG4YNL223W RMD1Q03441 430 aa7.08□□□□□ -1.28
ATG4YNL223W DIB1Q06819 143 aaPredicted RBP7.08□□□□□ -1.28
ATG4YNL223W ADR1P07248 1323 aa7.08□□□□□ -1.28
ATG4YNL223W HXT13P39924 564 aa7.07□□□□□ -1.28
ATG4YNL223W HXT17P53631 564 aa7.07□□□□□ -1.28
ATG4YNL223W BRE1Q07457 700 aaKnown RBP7.07□□□□□ -1.28
ATG4YNL223W PCT1P13259 424 aa7.06□□□□□ -1.28
ATG4YNL223W HPC2Q01448 625 aa7.06□□□□□ -1.28
ATG4YNL223W RPN7Q06103 429 aaKnown RBP7.06□□□□□ -1.28
ATG4YNL223W BDF2Q07442 638 aa7.06□□□□□ -1.28
ATG4YNL223W RIM20Q12033 661 aa7.06□□□□□ -1.28
ATG4YNL223W DUR1,2P32528 1835 aaKnown RBP7.06□□□□□ -1.28
ATG4YNL223W AAP1P37898 856 aaKnown RBP7.05□□□□□ -1.28
ATG4YNL223W UGA2P38067 497 aa7.05□□□□□ -1.28
ATG4YNL223W SSP1P38871 571 aa7.05□□□□□ -1.28
ATG4YNL223W PIB2P53191 635 aa7.05□□□□□ -1.28
ATG4YNL223W YNL193WP53870 558 aa7.05□□□□□ -1.28
ATG4YNL223W SYF1Q04048 859 aaPredicted RBP7.05□□□□□ -1.28
ATG4YNL223W PMD1P32634 1753 aa7.05□□□□□ -1.28
ATG4YNL223W POM152P39685 1337 aa7.05□□□□□ -1.28
ATG4YNL223W KTR1P27810 393 aaKnown RBP7.04□□□□□ -1.28
Retrieved 100 of 5,963 RNA–protein pairs in 38.2 ms