RNA–Protein interactions for RNA: YMR153W

NUP53, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeastyeast

Gene NUP53, Length 1,428 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP53YMR153W SSK22P25390 1331 aaPredicted RBP9.66□□□□□ -0.86
NUP53YMR153W THS1P04801 734 aaKnown RBP9.65□□□□□ -0.86
NUP53YMR153W TPD3P31383 635 aa9.65□□□□□ -0.86
NUP53YMR153W SHC1P39000 512 aa9.65□□□□□ -0.86
NUP53YMR153W UBP16Q02863 499 aa9.65□□□□□ -0.86
NUP53YMR153W RPS9BP05755 195 aaKnown RBP9.65□□□□□ -0.87
NUP53YMR153W SYF1Q04048 859 aaPredicted RBP9.65□□□□□ -0.87
NUP53YMR153W PUS5Q06244 254 aa9.65□□□□□ -0.87
NUP53YMR153W RET1P22276 1149 aaKnown RBP9.64□□□□□ -0.87
NUP53YMR153W DNM1P54861 757 aa9.63□□□□□ -0.87
NUP53YMR153W YLR271WQ06152 274 aa9.63□□□□□ -0.87
NUP53YMR153W HEF3P53978 1044 aaKnown RBP9.62□□□□□ -0.87
NUP53YMR153W SRT1Q03175 343 aa9.62□□□□□ -0.87
NUP53YMR153W NUP133P36161 1157 aa9.61□□□□□ -0.87
NUP53YMR153W FCP1Q03254 732 aa9.61□□□□□ -0.87
NUP53YMR153W SWI1P09547 1314 aa9.61□□□□□ -0.87
NUP53YMR153W CST6P40535 587 aa9.6□□□□□ -0.87
NUP53YMR153W DIP2Q12220 943 aaPredicted RBP9.6□□□□□ -0.87
NUP53YMR153W MRP7P12687 371 aa9.59□□□□□ -0.87
NUP53YMR153W MSM1P22438 575 aa9.58□□□□□ -0.88
NUP53YMR153W FIG2P25653 1609 aa9.58□□□□□ -0.88
NUP53YMR153W RTG2P32608 588 aaKnown RBP9.58□□□□□ -0.88
NUP53YMR153W YLR278CQ05854 1341 aa9.57□□□□□ -0.88
NUP53YMR153W DPL1Q05567 589 aa9.57□□□□□ -0.88
NUP53YMR153W YDR306CQ06640 478 aa9.57□□□□□ -0.88
NUP53YMR153W AIM7Q12156 149 aa9.57□□□□□ -0.88
NUP53YMR153W TIF4632P39936 914 aaKnown RBP9.56□□□□□ -0.88
NUP53YMR153W GAP1P19145 602 aaPredicted RBP9.56□□□□□ -0.88
NUP53YMR153W FET4P40988 552 aa9.56□□□□□ -0.88
NUP53YMR153W DPH6Q12429 685 aa9.56□□□□□ -0.88
NUP53YMR153W VHR2P40041 505 aa9.55□□□□□ -0.88
NUP53YMR153W NSR1P27476 414 aaKnown RBP RIP-Chip data9.54□□□□□ -0.88not detected
NUP53YMR153W YJR008WP47085 338 aa9.54□□□□□ -0.88
NUP53YMR153W YGR122WP53272 402 aa9.54□□□□□ -0.88
NUP53YMR153W TIM50Q02776 476 aa9.54□□□□□ -0.88
NUP53YMR153W NOP8Q08287 484 aaPredicted RBP9.54□□□□□ -0.88
NUP53YMR153W PSH1Q12161 406 aa9.54□□□□□ -0.88
NUP53YMR153W SUI2P20459 304 aaKnown RBP9.53□□□□□ -0.88
NUP53YMR153W SET4P42948 560 aa9.53□□□□□ -0.88
NUP53YMR153W ITC1P53125 1264 aa9.53□□□□□ -0.88
NUP53YMR153W TRM44Q02648 567 aaKnown RBP9.53□□□□□ -0.88
NUP53YMR153W GLC3P32775 704 aa9.52□□□□□ -0.89
NUP53YMR153W ICP55P40051 511 aa9.52□□□□□ -0.89
NUP53YMR153W RPT4P53549 437 aaKnown RBP9.52□□□□□ -0.89
NUP53YMR153W TRP5P00931 707 aaKnown RBP9.51□□□□□ -0.89
NUP53YMR153W KRE2P27809 442 aa9.51□□□□□ -0.89
NUP53YMR153W NGR1P32831 672 aaKnown RBP9.51□□□□□ -0.89
NUP53YMR153W UBX2Q04228 584 aa9.51□□□□□ -0.89
NUP53YMR153W RPP0P05317 312 aaKnown RBP9.5□□□□□ -0.89
NUP53YMR153W SWC3P31376 625 aa9.5□□□□□ -0.89
NUP53YMR153W AFG2P32794 780 aa9.5□□□□□ -0.89
NUP53YMR153W SET1P38827 1080 aaKnown RBP9.5□□□□□ -0.89
NUP53YMR153W VPS4P52917 437 aa9.5□□□□□ -0.89
NUP53YMR153W THI3Q07471 609 aa9.5□□□□□ -0.89
NUP53YMR153W GAS5Q08193 484 aa9.5□□□□□ -0.89
NUP53YMR153W RRG1Q12167 365 aaPredicted RBP9.5□□□□□ -0.89
NUP53YMR153W SAC3P46674 1301 aa9.5□□□□□ -0.89
NUP53YMR153W DUR1,2P32528 1835 aaKnown RBP9.5□□□□□ -0.89
NUP53YMR153W MGM1P32266 881 aa9.49□□□□□ -0.89
NUP53YMR153W RAD24P32641 659 aa9.49□□□□□ -0.89
NUP53YMR153W VPS27P40343 622 aaKnown RBP9.49□□□□□ -0.89
NUP53YMR153W GSM1P42950 618 aa9.49□□□□□ -0.89
NUP53YMR153W SEN54Q02825 467 aaPredicted RBP9.49□□□□□ -0.89
NUP53YMR153W SUP35P05453 685 aaKnown RBP9.48□□□□□ -0.89
NUP53YMR153W HPR1P17629 752 aaKnown RBP9.48□□□□□ -0.89
NUP53YMR153W STV1P37296 890 aa9.48□□□□□ -0.89
NUP53YMR153W EMP47P43555 445 aa9.48□□□□□ -0.89
NUP53YMR153W CRF1Q04930 467 aa9.48□□□□□ -0.89
NUP53YMR153W SPL2P38839 148 aa9.47□□□□□ -0.89
NUP53YMR153W YPP1P46951 817 aa9.47□□□□□ -0.89
NUP53YMR153W SRC1Q03707 834 aa9.47□□□□□ -0.89
NUP53YMR153W MAK21Q12176 1025 aaKnown RBP9.47□□□□□ -0.89
NUP53YMR153W UBP12P39538 1254 aa9.46□□□□□ -0.9
NUP53YMR153W YGR117CP53270 476 aa9.46□□□□□ -0.9
NUP53YMR153W MTC5Q03897 1148 aa9.46□□□□□ -0.9
NUP53YMR153W SNU66Q12420 587 aaPredicted RBP9.46□□□□□ -0.9
NUP53YMR153W PEA2P40091 420 aa9.45□□□□□ -0.9
NUP53YMR153W YIL089WP40500 205 aa9.45□□□□□ -0.9
NUP53YMR153W CDC45Q08032 650 aa9.45□□□□□ -0.9
NUP53YMR153W HXT10P43581 546 aa9.44□□□□□ -0.9
NUP53YMR153W CSI1Q04368 295 aa9.44□□□□□ -0.9
NUP53YMR153W FLO11P08640 1367 aa9.43□□□□□ -0.9
NUP53YMR153W BOI2P39969 1040 aa9.43□□□□□ -0.9
NUP53YMR153W IRC4Q03036 179 aa9.43□□□□□ -0.9
NUP53YMR153W CWC15Q03772 175 aaKnown RBP9.43□□□□□ -0.9
NUP53YMR153W PRP42Q03776 544 aaKnown RBP9.43□□□□□ -0.9
NUP53YMR153W ETP1P38748 585 aaKnown RBP9.42□□□□□ -0.9
NUP53YMR153W DUS1P53759 423 aaKnown RBP9.42□□□□□ -0.9
NUP53YMR153W TOS4Q06266 489 aa9.42□□□□□ -0.9
NUP53YMR153W RVB2Q12464 471 aaKnown RBP9.41□□□□□ -0.9
NUP53YMR153W LCB1P25045 558 aaKnown RBP9.4□□□□□ -0.9
NUP53YMR153W JJJ2P46997 583 aa9.4□□□□□ -0.9
NUP53YMR153W CBP1P07252 654 aa9.39□□□□□ -0.91
NUP53YMR153W DAL5P15365 543 aa9.39□□□□□ -0.91
NUP53YMR153W RPS7AP26786 190 aaKnown RBP9.39□□□□□ -0.91
NUP53YMR153W GSC2P40989 1895 aa9.39□□□□□ -0.91
NUP53YMR153W ARG82P07250 355 aa9.39□□□□□ -0.91
NUP53YMR153W SLA1P32790 1244 aa9.38□□□□□ -0.91
NUP53YMR153W NUG1P40010 520 aaKnown RBP9.38□□□□□ -0.91
NUP53YMR153W ADR1P07248 1323 aa9.38□□□□□ -0.91
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms