RNA–Protein interactions for RNA: YOR339C

UBC11, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC11, Length 471 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC11	YOR339C	TSA2	Q04120	196 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	RTT103	Q05543	409 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	FEX2	Q08991	375 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	YPR108W-A	Q3E7B3	70 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	ARG80	P07249	177 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	POP2	P39008	433 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	PAC2	P39937	518 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	YGR210C	P42942	411 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	XPT1	P47165	209 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	YGL262W	P53054	175 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	SMM1	P53720	384 aa	Known RBP	4.87	□□□□□ -1.63
UBC11	YOR339C	YNR064C	P53750	290 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	RPL21A	Q02753	160 aa	Known RBP	4.87	□□□□□ -1.63
UBC11	YOR339C	THI74	Q04083	370 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	RIM9	Q04734	239 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	FEX1	Q08913	375 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	SWT1	Q12104	458 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	YLR125W	Q12138	136 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	YDL009C	Q12210	107 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	GEP5	Q12393	293 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	RPL21B	Q12672	160 aa	Known RBP	4.87	□□□□□ -1.63
UBC11	YOR339C	SPO24	Q3E752	67 aa		4.87	□□□□□ -1.63
UBC11	YOR339C	PUT1	P09368	476 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	APA2	P22108	325 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	DBP2	P24783	546 aa	Known RBP	4.86	□□□□□ -1.63
UBC11	YOR339C	YCL042W	P25572	119 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	YUH1	P35127	236 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	RRF1	P38771	230 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
UBC11	YOR339C	BMT5	P40493	336 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	RPA34	P47006	233 aa	Predicted RBP	4.86	□□□□□ -1.63
UBC11	YOR339C	YHC3	P47040	408 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	NIF3	P53081	288 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	CWC25	P53854	179 aa	Known RBP	4.86	□□□□□ -1.63
UBC11	YOR339C	MRPL22	P53881	309 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	DPB4	Q04603	196 aa	Known RBP	4.86	□□□□□ -1.63
UBC11	YOR339C	ASM4	Q05166	528 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	CSI2	Q08054	341 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	ALG6	Q12001	544 aa	Known RBP	4.86	□□□□□ -1.63
UBC11	YOR339C	RDL1	Q12305	139 aa	Known RBP	4.86	□□□□□ -1.63
UBC11	YOR339C	HUG1	Q6Q5K6	68 aa		4.86	□□□□□ -1.63
UBC11	YOR339C	TPI1	P00942	248 aa	Known RBP	4.85	□□□□□ -1.63
UBC11	YOR339C	GDH1	P07262	454 aa	Known RBP	4.85	□□□□□ -1.63
UBC11	YOR339C	ATP10	P18496	279 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	OLE1	P21147	510 aa	Known RBP	4.85	□□□□□ -1.63
UBC11	YOR339C	SUA5	P32579	426 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	VMA8	P32610	256 aa	Known RBP	4.85	□□□□□ -1.63
UBC11	YOR339C	IES6	P32617	166 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	CPR5	P35176	225 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	UTP30	P36144	274 aa	Known RBP	4.85	□□□□□ -1.63
UBC11	YOR339C	SRL3	P36167	246 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	GPI18	P38211	433 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	CUE1	P38428	203 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	LAG1	P38703	411 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	SSO2	P39926	295 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	LSM4	P40070	187 aa	Known RBP	4.85	□□□□□ -1.63
UBC11	YOR339C	PRM5	P40476	318 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	YFL015C	P43578	164 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	MEH1	Q02205	184 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	YDR415C	Q04033	374 aa	Predicted RBP	4.85	□□□□□ -1.63
UBC11	YOR339C	ECM18	Q04623	453 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	NOC4	Q06512	552 aa	Predicted RBP	4.85	□□□□□ -1.63
UBC11	YOR339C	YDL086W	Q07505	273 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	IRC25	Q07951	179 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	YOR292C	Q08743	309 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	BBP1	Q12365	385 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	TFC7	Q12415	435 aa		4.85	□□□□□ -1.63
UBC11	YOR339C	TFB5	Q3E7C1	72 aa	Predicted RBP	4.85	□□□□□ -1.63
UBC11	YOR339C	QCR2	P07257	368 aa		4.84	□□□□□ -1.63
UBC11	YOR339C	ISC10	P32645	267 aa		4.84	□□□□□ -1.63
UBC11	YOR339C	REC104	P33323	182 aa		4.84	□□□□□ -1.63
UBC11	YOR339C	ALG14	P38242	237 aa		4.84	□□□□□ -1.63
UBC11	YOR339C	YER137C	P40083	148 aa	Known RBP	4.84	□□□□□ -1.63
UBC11	YOR339C	PCL7	P40186	285 aa		4.84	□□□□□ -1.63
UBC11	YOR339C	TTI2	P47168	421 aa		4.84	□□□□□ -1.63
UBC11	YOR339C	WSC2	P53832	503 aa		4.84	□□□□□ -1.63
UBC11	YOR339C	DGK1	Q12382	290 aa		4.84	□□□□□ -1.63
UBC11	YOR339C	PRM4	Q12498	284 aa		4.84	□□□□□ -1.63
UBC11	YOR339C	CKS1	P20486	150 aa	Known RBP	4.83	□□□□□ -1.64
UBC11	YOR339C	LSB5	P25369	354 aa		4.83	□□□□□ -1.64
UBC11	YOR339C	ACB1	P31787	87 aa		4.83	□□□□□ -1.64
UBC11	YOR339C	ERG2	P32352	222 aa		4.83	□□□□□ -1.64
UBC11	YOR339C	MRP20	P32387	263 aa		4.83	□□□□□ -1.64
UBC11	YOR339C	VMA11	P32842	164 aa		4.83	□□□□□ -1.64
UBC11	YOR339C	SOR1	P35497	357 aa	Known RBP	4.83	□□□□□ -1.64
UBC11	YOR339C	GLY1	P37303	387 aa	Known RBP	4.83	□□□□□ -1.64
UBC11	YOR339C	IKI1	P38874	309 aa		4.83	□□□□□ -1.64
UBC11	YOR339C	IRC24	P40580	263 aa		4.83	□□□□□ -1.64
UBC11	YOR339C	YFH1	Q07540	174 aa		4.83	□□□□□ -1.64
UBC11	YOR339C	SOR2	Q07786	357 aa		4.83	□□□□□ -1.64
UBC11	YOR339C	TIP1	P27654	210 aa	Predicted RBP	4.82	□□□□□ -1.64
UBC11	YOR339C	ADH5	P38113	351 aa	Known RBP	4.82	□□□□□ -1.64
UBC11	YOR339C	YPC1	P38298	316 aa		4.82	□□□□□ -1.64
UBC11	YOR339C	YIR035C	P40579	254 aa		4.82	□□□□□ -1.64
UBC11	YOR339C	GZF3	P42944	551 aa	Known RBP	4.82	□□□□□ -1.64
UBC11	YOR339C	ABM1	P47146	123 aa		4.82	□□□□□ -1.64
UBC11	YOR339C	YGL114W	P53134	725 aa		4.82	□□□□□ -1.64
UBC11	YOR339C	APJ1	P53940	528 aa		4.82	□□□□□ -1.64
UBC11	YOR339C	VPS28	Q02767	242 aa		4.82	□□□□□ -1.64
UBC11	YOR339C	YLR224W	Q05947	369 aa		4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 22.3 ms