RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	LSM4	P40070	187 aa	Known RBP	0.91	□□□□□ -2.26
RTR1	YER139C	FAR7	P43592	221 aa		0.91	□□□□□ -2.26
RTR1	YER139C	MGA1	P53050	456 aa		0.91	□□□□□ -2.26
RTR1	YER139C	YGL159W	P53110	370 aa		0.91	□□□□□ -2.26
RTR1	YER139C	NOP19	P53317	196 aa	Predicted RBP	0.91	□□□□□ -2.26
RTR1	YER139C	RTC4	P53850	401 aa		0.91	□□□□□ -2.26
RTR1	YER139C	SNZ1	Q03148	297 aa		0.91	□□□□□ -2.26
RTR1	YER139C	FUS2	Q05670	677 aa		0.91	□□□□□ -2.26
RTR1	YER139C	GGA1	Q06336	557 aa		0.91	□□□□□ -2.26
RTR1	YER139C	CMC2	Q3E7A4	109 aa		0.91	□□□□□ -2.26
RTR1	YER139C	IGO2	Q9P305	131 aa		0.91	□□□□□ -2.26
RTR1	YER139C	TUS1	Q06412	1307 aa		0.9	□□□□□ -2.26
RTR1	YER139C	QCR7	P00128	127 aa		0.9	□□□□□ -2.27
RTR1	YER139C	RPL9A	P05738	191 aa	Known RBP	0.9	□□□□□ -2.27
RTR1	YER139C	ERD2	P18414	219 aa		0.9	□□□□□ -2.27
RTR1	YER139C	EHD3	P28817	500 aa		0.9	□□□□□ -2.27
RTR1	YER139C	OAC1	P32332	324 aa		0.9	□□□□□ -2.27
RTR1	YER139C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.9	□□□□□ -2.27	not detected
RTR1	YER139C	PRX1	P34227	261 aa	Known RBP	0.9	□□□□□ -2.27
RTR1	YER139C	APS1	P35181	156 aa		0.9	□□□□□ -2.27
RTR1	YER139C	TAF14	P35189	244 aa		0.9	□□□□□ -2.27
RTR1	YER139C	ECM4	P36156	370 aa		0.9	□□□□□ -2.27
RTR1	YER139C	MRPL28	P36527	147 aa		0.9	□□□□□ -2.27
RTR1	YER139C	SHG1	P38337	142 aa		0.9	□□□□□ -2.27
RTR1	YER139C	YHR125W	P38831	101 aa		0.9	□□□□□ -2.27
RTR1	YER139C	PDS1	P40316	373 aa	Predicted RBP	0.9	□□□□□ -2.27
RTR1	YER139C	PEP8	P40335	379 aa		0.9	□□□□□ -2.27
RTR1	YER139C	AYR1	P40471	297 aa		0.9	□□□□□ -2.27
RTR1	YER139C	AIM25	P47140	327 aa		0.9	□□□□□ -2.27
RTR1	YER139C	RPL9B	P51401	191 aa	Known RBP	0.9	□□□□□ -2.27
RTR1	YER139C	ERG25	P53045	309 aa		0.9	□□□□□ -2.27
RTR1	YER139C	ERV29	P53337	310 aa		0.9	□□□□□ -2.27
RTR1	YER139C	YNL046W	P53956	172 aa		0.9	□□□□□ -2.27
RTR1	YER139C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.9	□□□□□ -2.27	not detected
RTR1	YER139C	YLR030W	Q07967	263 aa		0.9	□□□□□ -2.27
RTR1	YER139C	AKR2	Q12013	749 aa		0.9	□□□□□ -2.27
RTR1	YER139C	USB1	Q12208	290 aa	Known RBP	0.9	□□□□□ -2.27
RTR1	YER139C	ATO3	Q12359	275 aa		0.9	□□□□□ -2.27
RTR1	YER139C	TDA8	Q6B2U8	126 aa		0.9	□□□□□ -2.27
RTR1	YER139C	CKS1	P20486	150 aa	Known RBP	0.89	□□□□□ -2.27
RTR1	YER139C	APA2	P22108	325 aa		0.89	□□□□□ -2.27
RTR1	YER139C	SEC14	P24280	304 aa	Known RBP	0.89	□□□□□ -2.27
RTR1	YER139C	TAH1	P25638	111 aa	Predicted RBP	0.89	□□□□□ -2.27
RTR1	YER139C	PEX4	P29340	183 aa		0.89	□□□□□ -2.27
RTR1	YER139C	TRR1	P29509	319 aa	Known RBP	0.89	□□□□□ -2.27
RTR1	YER139C	ECM33	P38248	429 aa	Known RBP	0.89	□□□□□ -2.27
RTR1	YER139C	HMF1	P40037	129 aa	Known RBP	0.89	□□□□□ -2.27
RTR1	YER139C	VTC1	P40046	129 aa	RIP-Chip data	0.89	□□□□□ -2.27	not detected
RTR1	YER139C	PEX17	P40155	199 aa		0.89	□□□□□ -2.27
RTR1	YER139C	YJR149W	P47177	404 aa		0.89	□□□□□ -2.27
RTR1	YER139C	YGR219W	P53307	113 aa		0.89	□□□□□ -2.27
RTR1	YER139C	GAS3	Q03655	524 aa		0.89	□□□□□ -2.27
RTR1	YER139C	PLP1	Q04004	230 aa		0.89	□□□□□ -2.27
RTR1	YER139C	LPP1	Q04396	274 aa		0.89	□□□□□ -2.27
RTR1	YER139C	GIM5	Q04493	163 aa		0.89	□□□□□ -2.27
RTR1	YER139C	NOC4	Q06512	552 aa	Predicted RBP	0.89	□□□□□ -2.27
RTR1	YER139C	YOL024W	Q08172	172 aa		0.89	□□□□□ -2.27
RTR1	YER139C	YOL160W	Q08321	113 aa		0.89	□□□□□ -2.27
RTR1	YER139C	MSA1	Q08471	629 aa		0.89	□□□□□ -2.27
RTR1	YER139C	NIP7	Q08962	181 aa	Known RBP	0.89	□□□□□ -2.27
RTR1	YER139C	YHR214C-E	Q8TGK0	99 aa		0.89	□□□□□ -2.27
RTR1	YER139C	JIP3	O13555	125 aa		0.88	□□□□□ -2.27
RTR1	YER139C	SIR2	P06700	562 aa		0.88	□□□□□ -2.27
RTR1	YER139C	QCR2	P07257	368 aa		0.88	□□□□□ -2.27
RTR1	YER139C	RPS28B	P0C0X0	67 aa	Known RBP	0.88	□□□□□ -2.27
RTR1	YER139C	RPS24A	P0CX31	135 aa	Known RBP	0.88	□□□□□ -2.27
RTR1	YER139C	RPS24B	P0CX32	135 aa	Known RBP	0.88	□□□□□ -2.27
RTR1	YER139C	MRPS28	P21771	286 aa		0.88	□□□□□ -2.27
RTR1	YER139C	MDH2	P22133	377 aa		0.88	□□□□□ -2.27
RTR1	YER139C	BET1	P22804	142 aa		0.88	□□□□□ -2.27
RTR1	YER139C	ARC19	P33204	171 aa	Known RBP	0.88	□□□□□ -2.27
RTR1	YER139C	SRY1	P36007	326 aa		0.88	□□□□□ -2.27
RTR1	YER139C	RPF1	P38805	295 aa	Known RBP	0.88	□□□□□ -2.27
RTR1	YER139C	GLE2	P40066	365 aa		0.88	□□□□□ -2.27
RTR1	YER139C	POG1	P40473	351 aa		0.88	□□□□□ -2.27
RTR1	YER139C	YKE4	P40544	346 aa		0.88	□□□□□ -2.27
RTR1	YER139C	TOS8	P53147	276 aa		0.88	□□□□□ -2.27
RTR1	YER139C	EFM5	P53200	248 aa	Known RBP	0.88	□□□□□ -2.27
RTR1	YER139C	LSM7	P53905	115 aa	Known RBP	0.88	□□□□□ -2.27
RTR1	YER139C	DID2	P69771	204 aa		0.88	□□□□□ -2.27
RTR1	YER139C	YNG1	Q08465	219 aa		0.88	□□□□□ -2.27
RTR1	YER139C	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.88	□□□□□ -2.27
RTR1	YER139C	RPS28A	Q3E7X9	67 aa	Predicted RBP	0.88	□□□□□ -2.27
RTR1	YER139C	YPR014C	Q6B0W2	109 aa		0.88	□□□□□ -2.27
RTR1	YER139C	MSW1	P04803	379 aa		0.87	□□□□□ -2.27
RTR1	YER139C	MRS1	P07266	363 aa		0.87	□□□□□ -2.27
RTR1	YER139C	SNF4	P12904	322 aa		0.87	□□□□□ -2.27
RTR1	YER139C	URA5	P13298	226 aa	Known RBP	0.87	□□□□□ -2.27
RTR1	YER139C	SCL1	P21243	252 aa	Known RBP	0.87	□□□□□ -2.27
RTR1	YER139C	MAG1	P22134	296 aa	Known RBP	0.87	□□□□□ -2.27
RTR1	YER139C	MGT1	P26188	188 aa		0.87	□□□□□ -2.27
RTR1	YER139C	ADE1	P27616	306 aa		0.87	□□□□□ -2.27
RTR1	YER139C	RME1	P32338	300 aa	Known RBP	0.87	□□□□□ -2.27
RTR1	YER139C	PHO88	P38264	188 aa	Predicted RBP	0.87	□□□□□ -2.27
RTR1	YER139C	ERV15	P38312	142 aa		0.87	□□□□□ -2.27
RTR1	YER139C	POP4	P38336	279 aa		0.87	□□□□□ -2.27
RTR1	YER139C	DSE2	P38844	325 aa		0.87	□□□□□ -2.27
RTR1	YER139C	SVP26	P38869	228 aa		0.87	□□□□□ -2.27
RTR1	YER139C	AVT2	P39981	480 aa		0.87	□□□□□ -2.27
RTR1	YER139C	SMD3	P43321	101 aa	Known RBP	0.87	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 67.8 ms