Protein–RNA interactions for Protein: P21771

MRPS28, 37S ribosomal protein S28, mitochondrial, yeast

Predictions only

Length 286 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
MRPS28	P21771	NSR1	YGR159C	1245 nt		18.64	■□□□□ 0.57
MRPS28	P21771	YML009W-B	YML009W-B	477 nt		17.9	■□□□□ 0.46
MRPS28	P21771	MDJ1	YFL016C	1536 nt		17.48	■□□□□ 0.39
MRPS28	P21771	NOP1	YDL014W	984 nt		17.02	■□□□□ 0.32
MRPS28	P21771	YJL027C	YJL027C	417 nt		16.05	■□□□□ 0.16
MRPS28	P21771	SSA3	YBL075C	1950 nt		16.03	■□□□□ 0.16
MRPS28	P21771	YKL036C	YKL036C	393 nt		15.39	■□□□□ 0.05
MRPS28	P21771	YBR190W	YBR190W	312 nt		15.17	■□□□□ 0.02
MRPS28	P21771	DBP2	YNL112W	1641 nt		15.05	■□□□□ -0
MRPS28	P21771	SRX1	YKL086W	384 nt		14.84	□□□□□ -0.03
MRPS28	P21771	RTC3	YHR087W	336 nt		14.81	□□□□□ -0.04
MRPS28	P21771	Q0297	Q0297	156 nt		14.61	□□□□□ -0.07
MRPS28	P21771	PUT4	YOR348C	1884 nt		14.52	□□□□□ -0.09
MRPS28	P21771	YCR051W	YCR051W	669 nt		14.03	□□□□□ -0.16
MRPS28	P21771	POA1	YBR022W	534 nt		14	□□□□□ -0.17
MRPS28	P21771	TRN1	tP(UGG)A	72 nt		13.99	□□□□□ -0.17
MRPS28	P21771	SUF9	tP(UGG)F	72 nt		13.99	□□□□□ -0.17
MRPS28	P21771	SUF8	tP(UGG)H	72 nt		13.99	□□□□□ -0.17
MRPS28	P21771	tP(UGG)L	tP(UGG)L	72 nt		13.99	□□□□□ -0.17
MRPS28	P21771	SUF7	tP(UGG)M	72 nt		13.99	□□□□□ -0.17
MRPS28	P21771	tP(UGG)N1	tP(UGG)N1	72 nt		13.99	□□□□□ -0.17
MRPS28	P21771	tP(UGG)N2	tP(UGG)N2	72 nt		13.99	□□□□□ -0.17
MRPS28	P21771	tP(UGG)O1	tP(UGG)O1	72 nt		13.99	□□□□□ -0.17
MRPS28	P21771	SUF11	tP(UGG)O2	72 nt		13.99	□□□□□ -0.17
MRPS28	P21771	SSA4	YER103W	1929 nt		13.99	□□□□□ -0.17
MRPS28	P21771	RVS167	YDR388W	1449 nt		13.97	□□□□□ -0.17
MRPS28	P21771	SPT5	YML010W	3192 nt		13.96	□□□□□ -0.17
MRPS28	P21771	ARE1	YCR048W	1833 nt		13.95	□□□□□ -0.18
MRPS28	P21771	SCS3	YGL126W	1143 nt		13.94	□□□□□ -0.18
MRPS28	P21771	BSC6	YOL137W	1494 nt		13.88	□□□□□ -0.19
MRPS28	P21771	CCC1	YLR220W	969 nt		13.88	□□□□□ -0.19
MRPS28	P21771	YHR049C-A	YHR049C-A	297 nt		13.79	□□□□□ -0.2
MRPS28	P21771	SCJ1	YMR214W	1134 nt		13.65	□□□□□ -0.22
MRPS28	P21771	SAH1	YER043C	1350 nt		13.65	□□□□□ -0.22
MRPS28	P21771	BDF1	YLR399C	2061 nt		13.55	□□□□□ -0.24
MRPS28	P21771	URN1	YPR152C	1398 nt		13.47	□□□□□ -0.25
MRPS28	P21771	OPI9	YLR338W	858 nt		13.47	□□□□□ -0.25
MRPS28	P21771	BUD23	YCR047C	828 nt		13.41	□□□□□ -0.26
MRPS28	P21771	PAC11	YDR488C	1602 nt		13.4	□□□□□ -0.26
MRPS28	P21771	TAT1	YBR069C	1860 nt		13.33	□□□□□ -0.27
MRPS28	P21771	YOL085C	YOL085C	342 nt		13.29	□□□□□ -0.28
MRPS28	P21771	SHR5	YOL110W	714 nt		13.23	□□□□□ -0.29
MRPS28	P21771	DEP1	YAL013W	1218 nt		13.19	□□□□□ -0.3
MRPS28	P21771	MEP2	YNL142W	1500 nt		13.13	□□□□□ -0.31
MRPS28	P21771	PTC2	YER089C	1395 nt		13.1	□□□□□ -0.31
MRPS28	P21771	RPP1B	YDL130W	321 nt		13.09	□□□□□ -0.31
MRPS28	P21771	PUN1	YLR414C	792 nt		13.08	□□□□□ -0.32
MRPS28	P21771	NAB2	YGL122C	1578 nt		13.07	□□□□□ -0.32
MRPS28	P21771	RPN10	YHR200W	807 nt		13.06	□□□□□ -0.32
MRPS28	P21771	NVJ2	YPR091C	2313 nt		13.05	□□□□□ -0.32
MRPS28	P21771	PKP1	YIL042C	1185 nt		13	□□□□□ -0.33
MRPS28	P21771	tP(UGG)O3	tP(UGG)O3	72 nt		12.92	□□□□□ -0.34
MRPS28	P21771	DCW1	YKL046C	1350 nt		12.9	□□□□□ -0.34
MRPS28	P21771	YNL208W	YNL208W	600 nt		12.88	□□□□□ -0.35
MRPS28	P21771	YBR220C	YBR220C	1683 nt		12.81	□□□□□ -0.36
MRPS28	P21771	YJR018W	YJR018W	363 nt		12.8	□□□□□ -0.36
MRPS28	P21771	FIS1	YIL065C	468 nt		12.75	□□□□□ -0.37
MRPS28	P21771	YMR090W	YMR090W	684 nt		12.73	□□□□□ -0.37
MRPS28	P21771	EMI2	YDR516C	1503 nt		12.71	□□□□□ -0.38
MRPS28	P21771	DAL1	YIR027C	1383 nt		12.69	□□□□□ -0.38
MRPS28	P21771	YPS1	YLR120C	1710 nt		12.68	□□□□□ -0.38
MRPS28	P21771	FPR4	YLR449W	1179 nt		12.67	□□□□□ -0.38
MRPS28	P21771	YHR165W-A	YHR165W-A	312 nt		12.63	□□□□□ -0.39
MRPS28	P21771	PCH2	YBR186W	1695 nt		12.61	□□□□□ -0.39
MRPS28	P21771	PET122	YER153C	765 nt		12.59	□□□□□ -0.39
MRPS28	P21771	PHO4	YFR034C	939 nt		12.57	□□□□□ -0.4
MRPS28	P21771	GUT2	YIL155C	1950 nt		12.57	□□□□□ -0.4
MRPS28	P21771	SDH1	YKL148C	1923 nt		12.56	□□□□□ -0.4
MRPS28	P21771	YDL221W	YDL221W	552 nt		12.52	□□□□□ -0.41
MRPS28	P21771	YDJ1	YNL064C	1230 nt		12.51	□□□□□ -0.41
MRPS28	P21771	SEC11	YIR022W	504 nt		12.5	□□□□□ -0.41
MRPS28	P21771	ATS1	YAL020C	1002 nt		12.5	□□□□□ -0.41
MRPS28	P21771	INM2	YDR287W	879 nt		12.47	□□□□□ -0.41
MRPS28	P21771	YDR095C	YDR095C	411 nt		12.43	□□□□□ -0.42
MRPS28	P21771	SCR1	SCR1	522 nt		12.42	□□□□□ -0.42
MRPS28	P21771	GAR1	YHR089C	618 nt		12.4	□□□□□ -0.42
MRPS28	P21771	FPS1	YLL043W	2010 nt		12.38	□□□□□ -0.43
MRPS28	P21771	YJR120W	YJR120W	351 nt		12.35	□□□□□ -0.43
MRPS28	P21771	CAC2	YML102W	1407 nt		12.35	□□□□□ -0.43
MRPS28	P21771	SCC4	YER147C	1875 nt		12.34	□□□□□ -0.43
MRPS28	P21771	PIB2	YGL023C	1908 nt		12.32	□□□□□ -0.44
MRPS28	P21771	RPP2B	YDR382W	333 nt		12.28	□□□□□ -0.44
MRPS28	P21771	PTP1	YDL230W	1008 nt		12.25	□□□□□ -0.45
MRPS28	P21771	RPP2A	YOL039W	321 nt		12.21	□□□□□ -0.45
MRPS28	P21771	RTF1	YGL244W	1677 nt		12.19	□□□□□ -0.46
MRPS28	P21771	YBL100C	YBL100C	315 nt		12.19	□□□□□ -0.46
MRPS28	P21771	YSC84	YHR016C	1407 nt		12.18	□□□□□ -0.46
MRPS28	P21771	IRC15	YPL017C	1500 nt		12.16	□□□□□ -0.46
MRPS28	P21771	GIS3	YLR094C	1509 nt		12.12	□□□□□ -0.47
MRPS28	P21771	RRN5	YLR141W	1092 nt		12.12	□□□□□ -0.47
MRPS28	P21771	UME6	YDR207C	2511 nt		12.1	□□□□□ -0.47
MRPS28	P21771	BOR1	YNL275W	1731 nt		12.08	□□□□□ -0.47
MRPS28	P21771	SSA1	YAL005C	1929 nt		12.08	□□□□□ -0.48
MRPS28	P21771	YHL050C	YHL050C	2094 nt		12.06	□□□□□ -0.48
MRPS28	P21771	ALF1	YNL148C	765 nt		12.06	□□□□□ -0.48
MRPS28	P21771	BOP3	YNL042W	1191 nt		12.04	□□□□□ -0.48
MRPS28	P21771	TIR1	YER011W	765 nt		12.02	□□□□□ -0.49
MRPS28	P21771	PTK1	YKL198C	1989 nt		12.01	□□□□□ -0.49
MRPS28	P21771	FUN26	YAL022C	1554 nt		12.01	□□□□□ -0.49
MRPS28	P21771	RRT12	YCR045C	1476 nt		11.92	□□□□□ -0.5

Retrieved 100 of 7,029 protein–RNA pairs in 12.9 ms