RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeastyeast

Gene VAM3, Length 852 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM3YOR106W ABF2Q02486 183 aa1.68□□□□□ -2.14
VAM3YOR106W KAP95Q06142 861 aaKnown RBP1.68□□□□□ -2.14
VAM3YOR106W YOR029WQ12243 111 aa1.68□□□□□ -2.14
VAM3YOR106W GPA2P10823 449 aa1.67□□□□□ -2.14
VAM3YOR106W TCP1P12612 559 aaKnown RBP1.67□□□□□ -2.14
VAM3YOR106W RIB7P33312 244 aa1.67□□□□□ -2.14
VAM3YOR106W UPS2P35200 230 aa1.67□□□□□ -2.14
VAM3YOR106W YKL075CP36083 450 aa1.67□□□□□ -2.14
VAM3YOR106W RIB1P38066 345 aa1.67□□□□□ -2.14
VAM3YOR106W PGD1P40356 397 aa1.67□□□□□ -2.14
VAM3YOR106W ICE2P40499 491 aa1.67□□□□□ -2.14
VAM3YOR106W YPL229WQ99395 206 aa1.66□□□□□ -2.14
VAM3YOR106W FZF1P32805 299 aa1.65□□□□□ -2.15
VAM3YOR106W BNA6P43619 295 aa1.65□□□□□ -2.15
VAM3YOR106W BOL2P53082 120 aa1.65□□□□□ -2.15
VAM3YOR106W MRPL50P53724 139 aa1.65□□□□□ -2.15
VAM3YOR106W YPR170W-BP0C5R9 85 aa1.64□□□□□ -2.15
VAM3YOR106W YNL217WP40152 326 aa1.64□□□□□ -2.15
VAM3YOR106W HOC1P47124 396 aa1.64□□□□□ -2.15
VAM3YOR106W GPI8P49018 411 aa1.64□□□□□ -2.15
VAM3YOR106W AIF1P52923 378 aa1.64□□□□□ -2.15
VAM3YOR106W YMD8Q03697 442 aa1.64□□□□□ -2.15
VAM3YOR106W QCR8P08525 94 aa1.63□□□□□ -2.15
VAM3YOR106W PSF1Q12488 208 aa1.63□□□□□ -2.15
VAM3YOR106W RPL27BP0C2H7 136 aaKnown RBP1.62□□□□□ -2.15
VAM3YOR106W YML108WQ03759 105 aa1.62□□□□□ -2.15
VAM3YOR106W SPG3Q04398 127 aaPredicted RBP1.62□□□□□ -2.15
VAM3YOR106W PAM18Q07914 168 aa1.62□□□□□ -2.15
VAM3YOR106W MET5P47169 1442 aa1.61□□□□□ -2.15
VAM3YOR106W TMA19P35691 167 aaKnown RBP1.61□□□□□ -2.15
VAM3YOR106W TRM12Q04235 462 aa1.61□□□□□ -2.15
VAM3YOR106W KRE28Q04431 385 aa1.61□□□□□ -2.15
VAM3YOR106W YPL162CQ12042 273 aa1.61□□□□□ -2.15
VAM3YOR106W YHR139C-AO13536 103 aa1.6□□□□□ -2.15
VAM3YOR106W TCD1P38756 429 aa1.6□□□□□ -2.15
VAM3YOR106W PEX17P40155 199 aa1.59□□□□□ -2.15
VAM3YOR106W MCM22P47167 239 aa1.59□□□□□ -2.15
VAM3YOR106W RRP36Q12481 300 aaPredicted RBP1.59□□□□□ -2.15
VAM3YOR106W MRPS28P21771 286 aa1.58□□□□□ -2.16
VAM3YOR106W YUH1P35127 236 aa1.58□□□□□ -2.16
VAM3YOR106W CUE1P38428 203 aa1.58□□□□□ -2.16
VAM3YOR106W NUP57P48837 541 aa1.58□□□□□ -2.16
VAM3YOR106W YNL134CP53912 376 aaKnown RBP1.58□□□□□ -2.16
VAM3YOR106W YNL010WP53981 241 aaKnown RBP1.58□□□□□ -2.16
VAM3YOR106W YLR173WQ06247 608 aa1.58□□□□□ -2.16
VAM3YOR106W ATG31Q12421 196 aa1.58□□□□□ -2.16
VAM3YOR106W MRPL25P23369 157 aa1.57□□□□□ -2.16
VAM3YOR106W SRB4P32569 687 aa1.57□□□□□ -2.16
VAM3YOR106W GAA1P39012 614 aa1.57□□□□□ -2.16
VAM3YOR106W YRB2P40517 327 aa1.57□□□□□ -2.16
VAM3YOR106W YJR149WP47177 404 aa1.57□□□□□ -2.16
VAM3YOR106W SAY1P53324 424 aa1.57□□□□□ -2.16
VAM3YOR106W ANT1Q06497 328 aa1.57□□□□□ -2.16
VAM3YOR106W RRT8Q08219 342 aa1.57□□□□□ -2.16
VAM3YOR106W LSO2Q3E772 92 aaKnown RBP1.57□□□□□ -2.16
VAM3YOR106W REP2P03872 296 aa1.56□□□□□ -2.16
VAM3YOR106W ATG22P25568 528 aa1.56□□□□□ -2.16
VAM3YOR106W RPT5P33297 434 aaKnown RBP1.56□□□□□ -2.16
VAM3YOR106W YET1P35723 206 aa1.56□□□□□ -2.16
VAM3YOR106W DOG2P38773 246 aa1.56□□□□□ -2.16
VAM3YOR106W IRC22P40006 225 aa1.56□□□□□ -2.16
VAM3YOR106W NSA1P53136 463 aaPredicted RBP1.56□□□□□ -2.16
VAM3YOR106W MPA43P53583 542 aaPredicted RBP1.56□□□□□ -2.16
VAM3YOR106W DID2P69771 204 aa1.56□□□□□ -2.16
VAM3YOR106W CPA1P07258 411 aaKnown RBP1.55□□□□□ -2.16
VAM3YOR106W TRM9P49957 279 aa1.55□□□□□ -2.16
VAM3YOR106W DOC1P53068 250 aa1.55□□□□□ -2.16
VAM3YOR106W SNZ1Q03148 297 aa1.55□□□□□ -2.16
VAM3YOR106W LPP1Q04396 274 aa1.55□□□□□ -2.16
VAM3YOR106W VAR1P02381 398 aa1.54□□□□□ -2.16
VAM3YOR106W MED4Q12343 284 aa1.54□□□□□ -2.16
VAM3YOR106W VPS21P36017 210 aaKnown RBP1.53□□□□□ -2.16
VAM3YOR106W NUP84P52891 726 aa1.53□□□□□ -2.16
VAM3YOR106W YNR077CP53758 84 aa1.53□□□□□ -2.16
VAM3YOR106W URA8P38627 578 aaPredicted RBP1.52□□□□□ -2.17
VAM3YOR106W UBC7Q02159 165 aa1.52□□□□□ -2.17
VAM3YOR106W YDR248CQ03786 193 aa1.52□□□□□ -2.17
VAM3YOR106W DRS2P39524 1355 aa1.51□□□□□ -2.17
VAM3YOR106W PDR18P53756 1333 aa1.51□□□□□ -2.17
VAM3YOR106W BCY1P07278 416 aaKnown RBP1.51□□□□□ -2.17
VAM3YOR106W UMP1P38293 148 aa1.51□□□□□ -2.17
VAM3YOR106W POP4P38336 279 aa1.51□□□□□ -2.17
VAM3YOR106W YER076CP40049 302 aa1.51□□□□□ -2.17
VAM3YOR106W TUS1Q06412 1307 aa1.5□□□□□ -2.17
VAM3YOR106W YLR156WP0CE96 114 aa1.5□□□□□ -2.17
VAM3YOR106W YLR159WP0CE97 114 aa1.5□□□□□ -2.17
VAM3YOR106W YLR161WP0CE98 114 aa1.5□□□□□ -2.17
VAM3YOR106W CDC10P25342 322 aaKnown RBP1.5□□□□□ -2.17
VAM3YOR106W TFC1P32367 649 aa1.5□□□□□ -2.17
VAM3YOR106W TVP38P36164 337 aa1.5□□□□□ -2.17
VAM3YOR106W MRPL28P36527 147 aa1.5□□□□□ -2.17
VAM3YOR106W LDB7P38210 180 aa1.5□□□□□ -2.17
VAM3YOR106W ERJ5P43613 295 aaPredicted RBP1.5□□□□□ -2.17
VAM3YOR106W SRL4Q03085 281 aa1.5□□□□□ -2.17
VAM3YOR106W SNC2P33328 115 aa1.49□□□□□ -2.17
VAM3YOR106W NTF2P33331 125 aaKnown RBP1.49□□□□□ -2.17
VAM3YOR106W TSC3Q3E790 80 aa1.49□□□□□ -2.17
VAM3YOR106W SPT3P06844 337 aa1.48□□□□□ -2.17
VAM3YOR106W FMC1P40491 155 aa1.48□□□□□ -2.17
VAM3YOR106W NOP13P53883 403 aaKnown RBP RIP-Chip data1.48□□□□□ -2.17not detected
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms