RNA–Protein interactions for RNA: YBR165W

UBS1, Transcript of Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p, yeast

Gene UBS1, Length 834 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBS1	YBR165W	YOR029W	Q12243	111 aa		1.81	□□□□□ -2.12
UBS1	YBR165W	YHR139C-A	O13536	103 aa		1.8	□□□□□ -2.12
UBS1	YBR165W	CDC8	P00572	216 aa		1.8	□□□□□ -2.12
UBS1	YBR165W	RPT5	P33297	434 aa	Known RBP	1.8	□□□□□ -2.12
UBS1	YBR165W	YMR144W	P40214	342 aa	Known RBP	1.8	□□□□□ -2.12
UBS1	YBR165W	TCP1	P12612	559 aa	Known RBP	1.79	□□□□□ -2.12
UBS1	YBR165W	YML096W	Q04489	525 aa		1.79	□□□□□ -2.12
UBS1	YBR165W	YLR126C	Q12288	251 aa		1.79	□□□□□ -2.12
UBS1	YBR165W	PSF1	Q12488	208 aa		1.79	□□□□□ -2.12
UBS1	YBR165W	FLO9	P39712	1322 aa		1.79	□□□□□ -2.12
UBS1	YBR165W	GPI8	P49018	411 aa		1.78	□□□□□ -2.12
UBS1	YBR165W	BOL2	P53082	120 aa		1.78	□□□□□ -2.12
UBS1	YBR165W	DID2	P69771	204 aa		1.78	□□□□□ -2.12
UBS1	YBR165W	SSQ1	Q05931	657 aa	Predicted RBP	1.78	□□□□□ -2.12
UBS1	YBR165W	RIO1	Q12196	484 aa	Known RBP	1.78	□□□□□ -2.12
UBS1	YBR165W	YOL107W	Q12239	342 aa		1.78	□□□□□ -2.12
UBS1	YBR165W	VPS21	P36017	210 aa	Known RBP	1.77	□□□□□ -2.13
UBS1	YBR165W	PGD1	P40356	397 aa		1.77	□□□□□ -2.13
UBS1	YBR165W	YJR149W	P47177	404 aa		1.77	□□□□□ -2.13
UBS1	YBR165W	KRE28	Q04431	385 aa		1.77	□□□□□ -2.13
UBS1	YBR165W	RIB1	P38066	345 aa		1.76	□□□□□ -2.13
UBS1	YBR165W	MCM22	P47167	239 aa		1.76	□□□□□ -2.13
UBS1	YBR165W	ERV29	P53337	310 aa		1.76	□□□□□ -2.13
UBS1	YBR165W	YNL010W	P53981	241 aa	Known RBP	1.76	□□□□□ -2.13
UBS1	YBR165W	TRM12	Q04235	462 aa		1.76	□□□□□ -2.13
UBS1	YBR165W	ATG31	Q12421	196 aa		1.76	□□□□□ -2.13
UBS1	YBR165W	CYR1	P08678	2026 aa	Known RBP	1.75	□□□□□ -2.13
UBS1	YBR165W	RPL27B	P0C2H7	136 aa	Known RBP	1.75	□□□□□ -2.13
UBS1	YBR165W	PEX17	P40155	199 aa		1.75	□□□□□ -2.13
UBS1	YBR165W	PAM18	Q07914	168 aa		1.75	□□□□□ -2.13
UBS1	YBR165W	GPA2	P10823	449 aa		1.74	□□□□□ -2.13
UBS1	YBR165W	FZF1	P32805	299 aa		1.74	□□□□□ -2.13
UBS1	YBR165W	SPG3	Q04398	127 aa	Predicted RBP	1.74	□□□□□ -2.13
UBS1	YBR165W	REP2	P03872	296 aa		1.73	□□□□□ -2.13
UBS1	YBR165W	IRC22	P40006	225 aa		1.73	□□□□□ -2.13
UBS1	YBR165W	YNL217W	P40152	326 aa		1.73	□□□□□ -2.13
UBS1	YBR165W	BNA6	P43619	295 aa		1.73	□□□□□ -2.13
UBS1	YBR165W	MRPL50	P53724	139 aa		1.73	□□□□□ -2.13
UBS1	YBR165W	RRT8	Q08219	342 aa		1.73	□□□□□ -2.13
UBS1	YBR165W	SRB4	P32569	687 aa		1.72	□□□□□ -2.13
UBS1	YBR165W	TMA19	P35691	167 aa	Known RBP	1.72	□□□□□ -2.13
UBS1	YBR165W	YRB2	P40517	327 aa		1.72	□□□□□ -2.13
UBS1	YBR165W	AIF1	P52923	378 aa		1.72	□□□□□ -2.13
UBS1	YBR165W	YML108W	Q03759	105 aa		1.72	□□□□□ -2.13
UBS1	YBR165W	YLR173W	Q06247	608 aa		1.72	□□□□□ -2.13
UBS1	YBR165W	RPO26	P20435	155 aa		1.71	□□□□□ -2.14
UBS1	YBR165W	DOC1	P53068	250 aa		1.71	□□□□□ -2.14
UBS1	YBR165W	YUH1	P35127	236 aa		1.7	□□□□□ -2.14
UBS1	YBR165W	TCD1	P38756	429 aa		1.7	□□□□□ -2.14
UBS1	YBR165W	NUP84	P52891	726 aa		1.7	□□□□□ -2.14
UBS1	YBR165W	YNL134C	P53912	376 aa	Known RBP	1.7	□□□□□ -2.14
UBS1	YBR165W	SRL4	Q03085	281 aa		1.7	□□□□□ -2.14
UBS1	YBR165W	CPA1	P07258	411 aa	Known RBP	1.69	□□□□□ -2.14
UBS1	YBR165W	YPR170W-B	P0C5R9	85 aa		1.69	□□□□□ -2.14
UBS1	YBR165W	GAA1	P39012	614 aa		1.69	□□□□□ -2.14
UBS1	YBR165W	YMD8	Q03697	442 aa		1.69	□□□□□ -2.14
UBS1	YBR165W	LSO2	Q3E772	92 aa	Known RBP	1.69	□□□□□ -2.14
UBS1	YBR165W	BCY1	P07278	416 aa	Known RBP	1.68	□□□□□ -2.14
UBS1	YBR165W	MRPL25	P23369	157 aa		1.68	□□□□□ -2.14
UBS1	YBR165W	CUE1	P38428	203 aa		1.68	□□□□□ -2.14
UBS1	YBR165W	ANT1	Q06497	328 aa		1.68	□□□□□ -2.14
UBS1	YBR165W	SPT3	P06844	337 aa		1.67	□□□□□ -2.14
UBS1	YBR165W	NTF2	P33331	125 aa	Known RBP	1.67	□□□□□ -2.14
UBS1	YBR165W	URA8	P38627	578 aa	Predicted RBP	1.67	□□□□□ -2.14
UBS1	YBR165W	TRM9	P49957	279 aa		1.67	□□□□□ -2.14
UBS1	YBR165W	MPA43	P53583	542 aa	Predicted RBP	1.67	□□□□□ -2.14
UBS1	YBR165W	LPP1	Q04396	274 aa		1.67	□□□□□ -2.14
UBS1	YBR165W	QCR8	P08525	94 aa		1.66	□□□□□ -2.14
UBS1	YBR165W	DOG2	P38773	246 aa		1.66	□□□□□ -2.14
UBS1	YBR165W	YPL162C	Q12042	273 aa		1.66	□□□□□ -2.14
UBS1	YBR165W	MRPS28	P21771	286 aa		1.65	□□□□□ -2.15
UBS1	YBR165W	YET1	P35723	206 aa		1.65	□□□□□ -2.15
UBS1	YBR165W	MED4	Q12343	284 aa		1.65	□□□□□ -2.15
UBS1	YBR165W	VAR1	P02381	398 aa		1.64	□□□□□ -2.15
UBS1	YBR165W	UMP1	P38293	148 aa		1.64	□□□□□ -2.15
UBS1	YBR165W	FMC1	P40491	155 aa		1.64	□□□□□ -2.15
UBS1	YBR165W	YNR077C	P53758	84 aa		1.64	□□□□□ -2.15
UBS1	YBR165W	ATG22	P25568	528 aa		1.63	□□□□□ -2.15
UBS1	YBR165W	LDB7	P38210	180 aa		1.63	□□□□□ -2.15
UBS1	YBR165W	POP4	P38336	279 aa		1.63	□□□□□ -2.15
UBS1	YBR165W	NUP57	P48837	541 aa		1.63	□□□□□ -2.15
UBS1	YBR165W	NSA1	P53136	463 aa	Predicted RBP	1.63	□□□□□ -2.15
UBS1	YBR165W	SAY1	P53324	424 aa		1.63	□□□□□ -2.15
UBS1	YBR165W	UBC7	Q02159	165 aa		1.63	□□□□□ -2.15
UBS1	YBR165W	YLR283W	Q05867	314 aa		1.63	□□□□□ -2.15
UBS1	YBR165W	PDR18	P53756	1333 aa		1.63	□□□□□ -2.15
UBS1	YBR165W	YLR156W	P0CE96	114 aa		1.62	□□□□□ -2.15
UBS1	YBR165W	YLR159W	P0CE97	114 aa		1.62	□□□□□ -2.15
UBS1	YBR165W	YLR161W	P0CE98	114 aa		1.62	□□□□□ -2.15
UBS1	YBR165W	CDC10	P25342	322 aa	Known RBP	1.62	□□□□□ -2.15
UBS1	YBR165W	YER076C	P40049	302 aa		1.62	□□□□□ -2.15
UBS1	YBR165W	RPC17	P47076	161 aa		1.62	□□□□□ -2.15
UBS1	YBR165W	POP3	P53833	195 aa	Predicted RBP	1.62	□□□□□ -2.15
UBS1	YBR165W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	1.62	□□□□□ -2.15	not detected
UBS1	YBR165W	SWP1	Q02795	286 aa		1.62	□□□□□ -2.15
UBS1	YBR165W	SNZ1	Q03148	297 aa		1.62	□□□□□ -2.15
UBS1	YBR165W	MET5	P47169	1442 aa		1.61	□□□□□ -2.15
UBS1	YBR165W	SRY1	P36007	326 aa		1.61	□□□□□ -2.15
UBS1	YBR165W	MRPL17	P36528	281 aa		1.61	□□□□□ -2.15
UBS1	YBR165W	CUS2	P53830	285 aa	Predicted RBP	1.61	□□□□□ -2.15

Retrieved 100 of 5,963 RNA–protein pairs in 6.5 ms